View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1714_low_24 (Length: 312)

Name: NF1714_low_24
Description: NF1714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1714_low_24
NF1714_low_24
[»] chr4 (1 HSPs)
chr4 (8-298)||(32528660-32528954)


Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 8 - 298
Target Start/End: Complemental strand, 32528954 - 32528660
Alignment:
Q  8 taagttacgttattactatgtactttcaatggacaaagtgaatgaatta----gcagcgagttaatcgcaagctagctcgaccaaaaacatgcacaacat 103  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||    
T  32528954 taagttacgttattactatgtattttcaatggacaaagtgaatgaattaattagcagcgagttaatcgcaagctagctcgaccaaaaacatgcacaacat 32528855  T
Q  104 gatccgcatggaagaatccaataatgttttatttaaatgttgttttgttgttgcataaaggcagcatttataaaatgagtatataggagaatgtcgagct 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32528854 gatccgcatggaagaatccaataatgttttatttaaatgttgttttgttgttgcataaaggcagcatttataaaatgagtatataggagaatgtcgagct 32528755  T
Q  204 tgcgtgattttgatgatgagtgaatttcagtatatatgcagtttaaatataagtcatgtaaattgaaaacttaattcaacaatgctattcattgt 298  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32528754 tgcgtgattttgatgatgagtgaatttcagtatatatgcagtttaaatataagtcatgtaaattgaaaacttaattcaacaatgctattcattgt 32528660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University