View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1714_low_3 (Length: 611)

Name: NF1714_low_3
Description: NF1714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1714_low_3
NF1714_low_3
[»] chr6 (5 HSPs)
chr6 (1-542)||(10082304-10082845)
chr6 (1-484)||(10098126-10098609)
chr6 (490-542)||(4443557-4443609)
chr6 (490-542)||(13512507-13512559)
chr6 (490-542)||(28694668-28694720)
[»] chr2 (3 HSPs)
chr2 (490-542)||(37364042-37364094)
chr2 (490-542)||(35600593-35600645)
chr2 (490-542)||(40656395-40656447)
[»] chr8 (1 HSPs)
chr8 (490-542)||(9764365-9764417)
[»] chr7 (2 HSPs)
chr7 (490-542)||(18334467-18334519)
chr7 (490-542)||(38702785-38702837)
[»] chr5 (2 HSPs)
chr5 (490-542)||(33886969-33887021)
chr5 (490-542)||(37567382-37567434)
[»] chr4 (1 HSPs)
chr4 (490-542)||(38965881-38965933)
[»] chr1 (1 HSPs)
chr1 (490-542)||(34676542-34676594)
[»] chr3 (1 HSPs)
chr3 (490-541)||(26249337-26249388)


Alignment Details
Target: chr6 (Bit Score: 469; Significance: 0; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 1 - 542
Target Start/End: Complemental strand, 10082845 - 10082304
Alignment:
Q  1 catgatttagttaagctcttcgttattaatgtctttagctctctcatttgagttctctcaagttcttatggtattctcactttaaggctggaaatttctt 100  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10082845 catgatttagttaagctcttctttattaatgtctttagctctctcatttgagttctctcaagttcttatggtattctcactttaaggctggaaatttctt 10082746  T
Q  101 gtgcataaaatcgaatatgatgcgagataatagcctcaaatttgtcaagtcgtgatattttgctctaatggaattttcaacataaacatgagatctacgg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |    
T  10082745 gtgcataaaatcgaatatgatgcgagataatagcctcaaatttgtcaagtcgtgatattgtgctctaatggaattttcaacataaacatgagatctaccg 10082646  T
Q  201 aaataannnnnnnatcactctagaccatttgtatggtggtacgatacttagcaaaccttaaaagcactgcaacatatggtgtatgtgttgcagcttgtgt 300  Q
    ||||||       |||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  10082645 aaataatttttttatcactatagaccatttgtatggtggtacaatacttagcaaaccttaaaagcactgcaacatatggtgcatgtgttgcagcttgtgt 10082546  T
Q  301 cctaccttggtgctattcaatgtgggatgttggttgcaaaacatacattattggtgtggtgctattaatttgtacttagaattgtgtgccatcattgaga 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10082545 cctaccttggtgctattcaatgtgggatgttggttgcaaaacatacattattggtgtggtgctattaatttgtacttagaattgtgtgccatcattgaga 10082446  T
Q  401 gtgttagtgttattctggtgattctcatgtctataattattatatctacaaaagtatcatgcaattattaatttaaaaggtcaactgaacaaggtgttgg 500  Q
    |||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  10082445 gtgttactgttaatttggtgattctcatgtctataattattatatctacaaaagtatcatgcaattattaatttaaaaggtcaattgaacaaggtgttgg 10082346  T
Q  501 gcagcagagtggaagccgacaaaatgtgagggatcttccagt 542  Q
    ||||| |||||||||||||||||||||||||| || ||||||    
T  10082345 gcagcggagtggaagccgacaaaatgtgagggctcctccagt 10082304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 484
Target Start/End: Complemental strand, 10098609 - 10098126
Alignment:
Q  1 catgatttagttaagctcttcgttattaatgtctttagctctctcatttgagttctctcaagttcttatggtattctcactttaaggctggaaatttctt 100  Q
    |||||||||||||| |||||     ||| ||||||||||||| |||||||| ||||||| ||||||||||||||| ||||||||||| ||||||||||||    
T  10098609 catgatttagttaatctctt-----ttattgtctttagctctatcatttgatttctctcgagttcttatggtattttcactttaaggttggaaatttctt 10098515  T
Q  101 gtgcataaaatcgaatatgatgcgagataatagcctcaaatttgtcaagtcgtgatattttgctctaatggaattttcaacataaacatgagatctacgg 200  Q
    ||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||| |||||||| |||||||||||||||||||||||||||      
T  10098514 gtgcataaaatcgaatatgatgcgagagaaaagcctcaaatttgtcaaatcgtgatattttactctaatgaaattttcaacataaacatgagatctacta 10098415  T
Q  201 aaataannnnnnnatcactctagaccatttgtatggtggtacgatacttagcaaaccttaaaagcactgcaacatatggtgtatgtgttgcagcttgtgt 300  Q
    ||||||        | |||||||||| ||||||||||||| | |||||||||| ||| ||||||||||||||| ||||||||| ||||||||||||||||    
T  10098414 aaataaatgtt---ttactctagaccctttgtatggtggttcaatacttagcagaccataaaagcactgcaac-tatggtgtacgtgttgcagcttgtgt 10098319  T
Q  301 cctaccttggtgctattcaatgtgggatgttggttgcaaaacatacattattggtgtggtgctattaatttgtacttagaattgtgtgccatc------- 393  Q
    |||||||||||||||||||  ||||||||||||||||||  |   ||| || || |||||| |||||||||||| | ||| ||||||||||||           
T  10098318 cctaccttggtgctattcatggtgggatgttggttgcaatgcccccatcataggggtggtgttattaatttgtattgagatttgtgtgccatcattgaga 10098219  T
Q  394 --attgagagtgttagtgttattctggtgattctcatgtctataattattatatctacaaaagtatcatgcaattattaatttaaaaggtcaa 484  Q
      ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||    
T  10098218 tgattgagagtgttagtgttattttggtgtttctcatgtctataattattatatctacagaagtaccatggaattattaatttaaaaggtcaa 10098126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 490 - 542
Target Start/End: Complemental strand, 4443609 - 4443557
Alignment:
Q  490 caaggtgttgggcagcagagtggaagccgacaaaatgtgagggatcttccagt 542  Q
    |||||||||||||||||||||||||||||| | | |||||||| || ||||||    
T  4443609 caaggtgttgggcagcagagtggaagccgagagagtgtgagggctcctccagt 4443557  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 490 - 542
Target Start/End: Original strand, 13512507 - 13512559
Alignment:
Q  490 caaggtgttgggcagcagagtggaagccgacaaaatgtgagggatcttccagt 542  Q
    |||||||||||||||||||||||||||||| | | |||||||| || ||||||    
T  13512507 caaggtgttgggcagcagagtggaagccgagagagtgtgagggctcctccagt 13512559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 490 - 542
Target Start/End: Original strand, 28694668 - 28694720
Alignment:
Q  490 caaggtgttgggcagcagagtggaagccgacaaaatgtgagggatcttccagt 542  Q
    |||||||||||||||||||||||||||||| | | |||||||| || ||||||    
T  28694668 caaggtgttgggcagcagagtggaagccgagagagtgtgagggctcctccagt 28694720  T

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Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 490 - 542
Target Start/End: Complemental strand, 37364094 - 37364042
Alignment:
Q  490 caaggtgttgggcagcagagtggaagccgacaaaatgtgagggatcttccagt 542  Q
    ||||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  37364094 caaggtgttgggcagcagagtggaagccgacaaaatgtgagggctcctccagt 37364042  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 490 - 542
Target Start/End: Original strand, 35600593 - 35600645
Alignment:
Q  490 caaggtgttgggcagcagagtggaagccgacaaaatgtgagggatcttccagt 542  Q
    |||||||||||||||||||||||||||||| | | |||||||| || ||||||    
T  35600593 caaggtgttgggcagcagagtggaagccgagagagtgtgagggctcctccagt 35600645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 490 - 542
Target Start/End: Original strand, 40656395 - 40656447
Alignment:
Q  490 caaggtgttgggcagcagagtggaagccgacaaaatgtgagggatcttccagt 542  Q
    |||||||||||||||||||||||||||||| | | |||||||| || ||||||    
T  40656395 caaggtgttgggcagcagagtggaagccgagagagtgtgagggctcctccagt 40656447  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 490 - 542
Target Start/End: Original strand, 9764365 - 9764417
Alignment:
Q  490 caaggtgttgggcagcagagtggaagccgacaaaatgtgagggatcttccagt 542  Q
    ||||||||||||||||| ||| ||||||||||||||||||||| || ||||||    
T  9764365 caaggtgttgggcagcatagtagaagccgacaaaatgtgagggctcctccagt 9764417  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 490 - 542
Target Start/End: Complemental strand, 18334519 - 18334467
Alignment:
Q  490 caaggtgttgggcagcagagtggaagccgacaaaatgtgagggatcttccagt 542  Q
    |||||||||||||||||||||||||||||| | | |||||||| || ||||||    
T  18334519 caaggtgttgggcagcagagtggaagccgagagagtgtgagggctcctccagt 18334467  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 490 - 542
Target Start/End: Complemental strand, 38702837 - 38702785
Alignment:
Q  490 caaggtgttgggcagcagagtggaagccgacaaaatgtgagggatcttccagt 542  Q
    |||||||||||||||||||||||||||||| | | |||||||| || ||||||    
T  38702837 caaggtgttgggcagcagagtggaagccgagagagtgtgagggctcctccagt 38702785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 490 - 542
Target Start/End: Complemental strand, 33887021 - 33886969
Alignment:
Q  490 caaggtgttgggcagcagagtggaagccgacaaaatgtgagggatcttccagt 542  Q
    |||||||||||||||||||||||||||||| | | |||||||| || ||||||    
T  33887021 caaggtgttgggcagcagagtggaagccgagagagtgtgagggctcctccagt 33886969  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 490 - 542
Target Start/End: Complemental strand, 37567434 - 37567382
Alignment:
Q  490 caaggtgttgggcagcagagtggaagccgacaaaatgtgagggatcttccagt 542  Q
    |||||||||||||||||||||||||||||| | | |||||||| || ||||||    
T  37567434 caaggtgttgggcagcagagtggaagccgagagagtgtgagggctcctccagt 37567382  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 490 - 542
Target Start/End: Complemental strand, 38965933 - 38965881
Alignment:
Q  490 caaggtgttgggcagcagagtggaagccgacaaaatgtgagggatcttccagt 542  Q
    |||||||||||||||||||||||||||||| | | |||||||| || ||||||    
T  38965933 caaggtgttgggcagcagagtggaagccgagagagtgtgagggctcctccagt 38965881  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 490 - 542
Target Start/End: Complemental strand, 34676594 - 34676542
Alignment:
Q  490 caaggtgttgggcagcagagtggaagccgacaaaatgtgagggatcttccagt 542  Q
    |||||||||||||||||||||||||||||| | | |||||||| || ||||||    
T  34676594 caaggtgttgggcagcagagtggaagccgagagagtgtgagggctcctccagt 34676542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 490 - 541
Target Start/End: Original strand, 26249337 - 26249388
Alignment:
Q  490 caaggtgttgggcagcagagtggaagccgacaaaatgtgagggatcttccag 541  Q
    |||||||||||||||||||||||||||||| | | |||||||| || |||||    
T  26249337 caaggtgttgggcagcagagtggaagccgagagagtgtgagggctcctccag 26249388  T

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