View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1714_low_31 (Length: 257)
Name: NF1714_low_31
Description: NF1714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1714_low_31 |
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Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 28328382 - 28328141
Alignment:
| Q |
1 |
ttaagaataattttgagtgtaattaatatttgtttgtcaccaccatggtttaaaatgtggttgaggttgcagttatggtgaaaacgtctatgttgtaata |
100 |
Q |
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| T |
28328382 |
ttaagaataattttgagtgtaattaatatttgtttgtcaccaccatggtttaaaatgtggttgaggttgcagttatggtgaaaacgtctatgttgtaata |
28328283 |
T |
|
| Q |
101 |
atgtgtagacaattattgtcgatgcaattgcgactatggctgcagtagtgtcgtttccaaaacctctaaaaatgttaagaaatttgatcgtctca-nnnn |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28328282 |
atgtgtagacaattattgtcgatgcaattgcgactatggttgccgtagtgtcgtttccaaaacctctaaaaatgttaagaaatttgatcgtctcattttt |
28328183 |
T |
|
| Q |
200 |
nnnnncctccttaattctcttctaagtctctatctattggtt |
241 |
Q |
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|||||| |||||||||||||||||||||||||||||| |
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| T |
28328182 |
tttttcctcctcaattctcttctaagtctctatctattggtt |
28328141 |
T |
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