View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1714_low_38 (Length: 240)

Name: NF1714_low_38
Description: NF1714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1714_low_38
NF1714_low_38
[»] chr2 (7 HSPs)
chr2 (15-240)||(5586546-5586771)
chr2 (139-240)||(5576066-5576167)
chr2 (157-240)||(5573035-5573118)
chr2 (137-216)||(5582220-5582299)
chr2 (157-240)||(5592772-5592855)
chr2 (15-116)||(5576256-5576350)
chr2 (80-120)||(5582382-5582423)


Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 15 - 240
Target Start/End: Complemental strand, 5586771 - 5586546
Alignment:
Q  15 actatgcatctggcgcagctggaattcgtaccgagacaagcatggctaaggtttacataaattagaaatcaaagagccttttcatttctttgattgttca 114  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5586771 actacgcatctggcgcagctggaattcgtaccgagacaagcatggctaaggtttacataaattagaaatcaaagagccttttcatttctttgattgttca 5586672  T
Q  115 tctttaaataaattggtattgctacagggttttgtcatcagtttgggatttcagttaaaaaatcacaaagttataatttctcaaattgctagcagacttg 214  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  5586671 tctttaaataaattcgtattgctacagggttttgtcatcagtttgggattacagttaaaaaatcacaaagttataatttctcaaattgctagcagacttg 5586572  T
Q  215 gaagtcttaacaaagctcaagaatac 240  Q
    ||||||||||||||||||||||||||    
T  5586571 gaagtcttaacaaagctcaagaatac 5586546  T

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Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 139 - 240
Target Start/End: Complemental strand, 5576167 - 5576066
Alignment:
Q  139 cagggttttgtcatcagtttgggatttcagttaaaaaatcacaaagttataatttctcaaattgctagcagacttggaagtcttaacaaagctcaagaat 238  Q
    ||||||||||| |||||||||||||| |||||| ||||||||||||||||| |||||| ||||||||||||||||| | || || |||||||||||||||    
T  5576167 cagggttttgttatcagtttgggattacagttagaaaatcacaaagttatagtttctcgaattgctagcagacttgaaggtattgacaaagctcaagaat 5576068  T
Q  239 ac 240  Q
    ||    
T  5576067 ac 5576066  T

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Target: chr2; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 157 - 240
Target Start/End: Complemental strand, 5573118 - 5573035
Alignment:
Q  157 ttgggatttcagttaaaaaatcacaaagttataatttctcaaattgctagcagacttggaagtcttaacaaagctcaagaatac 240  Q
    |||||||| ||||||| |||||||| ||||||| |||||||||||||||||||||||||| || || ||||||||||| |||||    
T  5573118 ttgggattacagttaagaaatcacagagttatagtttctcaaattgctagcagacttggaggtattgacaaagctcaacaatac 5573035  T

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Target: chr2; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 137 - 216
Target Start/End: Complemental strand, 5582299 - 5582220
Alignment:
Q  137 tacagggttttgtcatcagtttgggatttcagttaaaaaatcacaaagttataatttctcaaattgctagcagacttgga 216  Q
    ||||||||| ||| ||||| |||||||| |||||||| ||||||||||| ||| ||||||||||||||||||||||||||    
T  5582299 tacagggttctgttatcagcttgggattacagttaaagaatcacaaagtaatagtttctcaaattgctagcagacttgga 5582220  T

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Target: chr2; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 157 - 240
Target Start/End: Complemental strand, 5592855 - 5592772
Alignment:
Q  157 ttgggatttcagttaaaaaatcacaaagttataatttctcaaattgctagcagacttggaagtcttaacaaagctcaagaatac 240  Q
    |||||||| ||||||| |||||||| ||||||| |||||||||||||||||  ||||||| |  || |||||||||||||||||    
T  5592855 ttgggattacagttaagaaatcacagagttatagtttctcaaattgctagccaacttggaggaattgacaaagctcaagaatac 5592772  T

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Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 15 - 116
Target Start/End: Complemental strand, 5576350 - 5576256
Alignment:
Q  15 actatgcatctggcgcagctggaattcgtaccgagacaagcatggctaaggtttacataaattagaaatcaaagagccttttcatttctttgattgttca 114  Q
    ||||||||||||| |||||||||||||||| ||||||||||||  ||| |||    |||||||    |||||||||||||||||||| ||||||||||||    
T  5576350 actatgcatctggtgcagctggaattcgtatcgagacaagcataactacggt----ataaatt---gatcaaagagccttttcatttatttgattgttca 5576258  T

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Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 120
Target Start/End: Complemental strand, 5582423 - 5582382
Alignment:
Q  80 aaatcaaagagcctt-ttcatttctttgattgttcatcttta 120  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  5582423 aaatcaaagagccttcttcatttctttgattgttcatcttta 5582382  T

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