View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1714_low_39 (Length: 240)
Name: NF1714_low_39
Description: NF1714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1714_low_39 |
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Alignment Details
Target: chr3 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 87 - 221
Target Start/End: Original strand, 40834004 - 40834133
Alignment:
| Q |
87 |
taagaaaagagagaaaacgacacatattagacaatagacacgtcttaattagaagtgtccgtggttaacttaacagagagaaaacatagagaagaaagca |
186 |
Q |
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| T |
40834004 |
taagaaaagagagaaaacgacatatattagacactagacacgtcttagttagaagtgtccgtggttaa-----cagagagaaaacatagagaagaaagca |
40834098 |
T |
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| Q |
187 |
gctaagtaaaacatacacaggtgccaagaagagga |
221 |
Q |
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| T |
40834099 |
gctaagtaaaacatacacaggtgccaagaagagga |
40834133 |
T |
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Target: chr3; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 7 - 93
Target Start/End: Original strand, 40833872 - 40833959
Alignment:
| Q |
7 |
tcaaataaaactatcaattaaatatatttataagtggcgacgaaatgg-tttgtggtgttgagttagactcatctcatttctaagaaa |
93 |
Q |
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| T |
40833872 |
tcaaataaaactatcacttaaatatatttataagtggcgacgaaatggttttgtggtgttgagttagactcgtctcatttctaagaaa |
40833959 |
T |
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