View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1714_low_4 (Length: 595)
Name: NF1714_low_4
Description: NF1714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1714_low_4 |
 | |
|
| [»] scaffold0690 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 407; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 32 - 589
Target Start/End: Complemental strand, 9336717 - 9336158
Alignment:
| Q |
32 |
aaactaatattggtaaagtcatcgagttgcggatgcaactcagatccatcaataatccggaatggaaaaattgatgaagagaaattgggctgaagtaa-- |
129 |
Q |
| |
|
||||||||||||||||| |||| | | |||| |||||||||| |||||||||||||| || ||||| |||||||||| |||||||| ||||||||| |
|
|
| T |
9336717 |
aaactaatattggtaaactcattgtatagcggtggcaactcagaaccatcaataatccgaaaaggaaatattgatgaagtgaaattggactgaagtaaca |
9336618 |
T |
|
| Q |
130 |
-gagtcgtggaagacaattttcaggatcacttgcttctaatacttacaatgtgtagttaatgtgatttatgaggagttttatagggactggataagcagg |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||| |||||||||| ||| |
|
|
| T |
9336617 |
agagtcgtggaagacaattttcaggatcacttgcttctaatacttgcgatgtgtagttaatgtaatttatgaggagttttataggtactggataagaagg |
9336518 |
T |
|
| Q |
229 |
taattcaagaatcttcatgttatcatgtgtacaagatatattgaagggacatctaatagtagggattttctgggcattcccaagcagcggtattagcact |
328 |
Q |
| |
|
|| ||||||||||||| |||||| ||| |||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9336517 |
tatttcaagaatcttcttgttatgatggttacatgataaattaaagggacatctaatagtagggattttctgggcattcccaagcagcggtattagcact |
9336418 |
T |
|
| Q |
329 |
aatgttattgttatcatgatcatcaaggaaaaagtaatgtgactgcaaatcatttcatatctttctatgtgtgactgaggttgtgtcgagcttgattctc |
428 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
9336417 |
aatgttattgttatcatgatcatcaaggaaaaagtaatatgactgcaaatcatttcgtatctttctatgtgtgactaaggttgtgtcgagcttgattctc |
9336318 |
T |
|
| Q |
429 |
ttagctatatatccttaatttgcatattcctccaagggtaaatcaaagtgctagacaaccaaaatttccaagtccaggtcaatgctataatgactttgac |
528 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9336317 |
ttagctatatatcattaatttgcatattcctccaagggtaaatcgaagtgctagacaaccaaaatttccaagtccaggtcaatgctataatgactttga- |
9336219 |
T |
|
| Q |
529 |
cccttagaaagacagtttcctactagtcttgtgcctcatttattggggtgagaataatcta |
589 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
9336218 |
cccttagaaagacagtttcctactagtcttgtgcctcatttattggagtgagaatagtcta |
9336158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 68 - 589
Target Start/End: Complemental strand, 9363588 - 9363064
Alignment:
| Q |
68 |
aactcagatccatcaataatccggaatggaaaaattgatgaagagaaattgggctgaagtaa---gagtcgtggaagacaattttcaggatcacttgctt |
164 |
Q |
| |
|
|||||||| |||||||||||||| || ||||| |||||||||| ||||| | ||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
9363588 |
aactcagaaccatcaataatccgaaaaggaaatattgatgaagtgaaatctgactgaagtaacaagagtcgtggaagacaattttcaggatcacttgctt |
9363489 |
T |
|
| Q |
165 |
ctaatacttacaatgtgtagttaatgtgatttatgaggagttttatagggactggataagcaggtaattcaagaatcttcatgttatcatgtgtacaaga |
264 |
Q |
| |
|
||||||||| | ||||||||||||||||||||||||||||||||||||| | |||||||| ||||| ||||||||||||| |||||| ||| |||| || |
|
|
| T |
9363488 |
ctaatacttgcgatgtgtagttaatgtgatttatgaggagttttataggaattggataagaaggtatttcaagaatcttcttgttatgatggttacatga |
9363389 |
T |
|
| Q |
265 |
tatattgaagggacatctaatagtagggattttctgggcattcccaagcagcggtattagcactaatgttattgttatcatgatcatcaaggaaaaagta |
364 |
Q |
| |
|
|| |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9363388 |
taaattgaagggacatccaatagtagggattttctgggcattcccaagaagcggtattagcactaatgttattgttatcatgatcatcaaggaaaaagta |
9363289 |
T |
|
| Q |
365 |
atgtgactgcaaatcatttcatatctttctatgtgtgactgagg-ttgtgtcgagcttgattctcttagctatatatccttaatttgcatattcctccaa |
463 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||| |||||||| | ||||| ||||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
9363288 |
atgtgactgcaaatcattttgtatctttctatgtgtgactgaggtttgtgtcgtgtttgatcctcttagctatttatcattaatttgcatattcctccaa |
9363189 |
T |
|
| Q |
464 |
gggtaaatcaaagtgctagacaaccaaaatttccaagtccaggtcaatgctataatgactttgaccccttagaaagacagtttcctactagtcttgtgcc |
563 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |
|
|
| T |
9363188 |
gggtaaatcgaagtgctagacaaccaaaatttccaaggccaggtcaatgctataatgactttga-tccttagaaagacagtttcctactagtctagtgcc |
9363090 |
T |
|
| Q |
564 |
tcatttattggggtgagaataatcta |
589 |
Q |
| |
|
||||||||||||||||||||| |||| |
|
|
| T |
9363089 |
tcatttattggggtgagaatagtcta |
9363064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 82 - 464
Target Start/End: Original strand, 9243484 - 9243869
Alignment:
| Q |
82 |
aataatccggaatggaaaaattgatgaagagaaattgggctgaag---taagagtcgtggaagacaattttcaggatcacttgcttctaatacttacaat |
178 |
Q |
| |
|
||||||||| || ||||| |||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||| | || |
|
|
| T |
9243484 |
aataatccgaaaaggaaatattgatgaagtgaaattggagtgaagaagtaagagtcgtggaagacaattttcaggatcacgtgcttctaatacttgcgat |
9243583 |
T |
|
| Q |
179 |
gtgtagttaatgtgatttatgaggagttttatagggactggataagcaggtaattcaagaatcttcatgttatcatgtgtacaagatatattgaagggac |
278 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |||||| | ||||||||| |||||||||| |
|
|
| T |
9243584 |
gtgtagttaatgtgacttatgaggagttttatagggactggataagcaggtagttcaagaatcttgttgttatggt---tacaagatagtttgaagggac |
9243680 |
T |
|
| Q |
279 |
atctaatagtagggattttctgggcattcccaagcagcggtattagcactaatgttattg---ttatcatgatcatcaaggaaaaagtaatgtgactgca |
375 |
Q |
| |
|
||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||||||| |||||||||| |
|
|
| T |
9243681 |
atccaatggtagggattttctgggcattcccaagcagcggtattagcactaatgttattgctgttataatgatcatgaaggaaaaagtattgtgactgca |
9243780 |
T |
|
| Q |
376 |
aatcatttcatatctttctatgtgtgactgaggttgtgtcgagcttgattctcttagctatatatccttaatttgcatattcctccaag |
464 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| || ||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
9243781 |
aatcatttcatatctttctatgtgtgagtgaggttgtatctagcttgattctcttagctatatatcattaatttgcatattcctccaag |
9243869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 474 - 543
Target Start/End: Original strand, 9243896 - 9243964
Alignment:
| Q |
474 |
aagtgctagacaaccaaaatttccaagtccaggtcaatgctataatgactttgaccccttagaaagacag |
543 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||| |||||||||| |
|
|
| T |
9243896 |
aagtgctagacaaccaaaatttccaagtccaggtcaatgctatgatgagtttga-ccctgagaaagacag |
9243964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 205 - 261
Target Start/End: Original strand, 9467779 - 9467835
Alignment:
| Q |
205 |
ttttatagggactggataagcaggtaattcaagaatcttcatgttatcatgtgtaca |
261 |
Q |
| |
|
|||||||||||||||||||| ||| | ||||| |||||||||||||| || |||||| |
|
|
| T |
9467779 |
ttttatagggactggataagtaggaatttcaataatcttcatgttattatttgtaca |
9467835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0690 (Bit Score: 115; Significance: 4e-58; HSPs: 1)
Name: scaffold0690
Description:
Target: scaffold0690; HSP #1
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 77 - 281
Target Start/End: Complemental strand, 757 - 556
Alignment:
| Q |
77 |
ccatcaataatccggaatggaaaaattgatgaagagaaattgggctgaagtaagagtcgtggaagacaattttcaggatcacttgcttctaatacttaca |
176 |
Q |
| |
|
|||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||| | ||| ||||| | |||||| ||||||| | |
|
|
| T |
757 |
ccatcaataatccgaaaaggaaaaattgatgaagagaaattgggctgaagtaagagtcgtggaaaacagtgttcgggatcgcgtgcttccaatacttgcg |
658 |
T |
|
| Q |
177 |
atgtgtagttaatgtgatttatgaggagttttatagggactggataagcaggtaattcaagaatcttcatgttatcatgtgtacaagatatattgaaggg |
276 |
Q |
| |
|
|||||||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||| || |
|
|
| T |
657 |
atgtgtagttaatgacccttatgaggagttttattgggactggataagcaggtagttcaagaatct---tgttatcatgtgtacaagatagattgaaagg |
561 |
T |
|
| Q |
277 |
acatc |
281 |
Q |
| |
|
||||| |
|
|
| T |
560 |
acatc |
556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 115; Significance: 4e-58; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 77 - 281
Target Start/End: Original strand, 15911348 - 15911549
Alignment:
| Q |
77 |
ccatcaataatccggaatggaaaaattgatgaagagaaattgggctgaagtaagagtcgtggaagacaattttcaggatcacttgcttctaatacttaca |
176 |
Q |
| |
|
|||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||| | ||| ||||||| |||||| ||||| | | |
|
|
| T |
15911348 |
ccatcaataatccgaaaaggaaaaattgatgaagagaaattgggctgaagtaagagtcgtggaaaacagtgttcgggatcacgtgcttccaatacatgcg |
15911447 |
T |
|
| Q |
177 |
atgtgtagttaatgtgatttatgaggagttttatagggactggataagcaggtaattcaagaatcttcatgttatcatgtgtacaagatatattgaaggg |
276 |
Q |
| |
|
|||||||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||| || |
|
|
| T |
15911448 |
atgtgtagttaatgacccttatgaggagttttattgggactggataagcaggtagttcaagaatct---tgttatcatgtgtacaagatagattgaaagg |
15911544 |
T |
|
| Q |
277 |
acatc |
281 |
Q |
| |
|
||||| |
|
|
| T |
15911545 |
acatc |
15911549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University