View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1714_low_41 (Length: 239)
Name: NF1714_low_41
Description: NF1714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1714_low_41 |
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Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 3 - 225
Target Start/End: Original strand, 30099163 - 30099385
Alignment:
| Q |
3 |
cgtttcgcctctgatgttttagctggcatggaccaagctattaacgacggtgttgatgtgatttcaatttcaatgggatttgatgatgttccactttatg |
102 |
Q |
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| T |
30099163 |
cgtttcgcctctgatgttttagctggcatggaccaagctattaacgacggtgttgatgtgatttcaatttcaatgggatttgatgatgttccactttatg |
30099262 |
T |
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| Q |
103 |
aagatcctatagcaatagcttcatttgcagctatggaaaaagggattgttgtttcatcttctgcaggtaacgcaggacctgaattcggaaccttgcacaa |
202 |
Q |
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| T |
30099263 |
aagatcctatagcaatagcttcatttgcagctatggaaaaagggattgttgtttcatcttctgcaggtaacgcaggacctgaattcggaaccttgcacaa |
30099362 |
T |
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| Q |
203 |
tggtatcccatggctccttactg |
225 |
Q |
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||||||||||||||||||||||| |
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| T |
30099363 |
tggtatcccatggctccttactg |
30099385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 12 - 225
Target Start/End: Complemental strand, 30091741 - 30091528
Alignment:
| Q |
12 |
tctgatgttttagctggcatggaccaagctattaacgacggtgttgatgtgatttcaatttcaatgggatttgatgatgttccactttatgaagatccta |
111 |
Q |
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| T |
30091741 |
tctgatgttttagctggaatggaccaagctattgctgatggtgttgatgtgatttcaatttctatgggatttgatggtgttccactttatgaagatgcta |
30091642 |
T |
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| Q |
112 |
tagcaatagcttcatttgcagctatggaaaaagggattgttgtttcatcttctgcaggtaacgcaggacctgaattcggaaccttgcacaatggtatccc |
211 |
Q |
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| T |
30091641 |
tagcaatagcttcttttgcagctatggagaaagggattgttgtttcgtcttctgcaggtaactcaggacctaagcatggaactttgcacaatggtatccc |
30091542 |
T |
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| Q |
212 |
atggctccttactg |
225 |
Q |
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||| | ||||||| |
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| T |
30091541 |
ttgggttcttactg |
30091528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 12 - 225
Target Start/End: Complemental strand, 30087761 - 30087548
Alignment:
| Q |
12 |
tctgatgttttagctggcatggaccaagctattaacgacggtgttgatgtgatttcaatttcaatgggatttgatgatgttccactttatgaagatccta |
111 |
Q |
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||||||||||||||||| ||||||||||| |||| || |||||||| |||||||||||||| || ||| |||||| | ||||||||||||||||| ||| |
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| T |
30087761 |
tctgatgttttagctggaatggaccaagcaattattgatggtgttgacgtgatttcaatttctattggaattgatggtattccactttatgaagatgcta |
30087662 |
T |
|
| Q |
112 |
tagcaatagcttcatttgcagctatggaaaaagggattgttgtttcatcttctgcaggtaacgcaggacctgaattcggaaccttgcacaatggtatccc |
211 |
Q |
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| T |
30087661 |
tagcaatagcttcttttacagctatggagaaagggattgttgtttcatcttctgcaggtaactcaggacctaagcatggaaccttgcacaatggtatccc |
30087562 |
T |
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| Q |
212 |
atggctccttactg |
225 |
Q |
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||| ||||||||| |
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| T |
30087561 |
ttgggtccttactg |
30087548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 12 - 166
Target Start/End: Complemental strand, 35171461 - 35171307
Alignment:
| Q |
12 |
tctgatgttttagctggcatggaccaagctattaacgacggtgttgatgtgatttcaatttcaatgggatttgatgatgttccactttatgaagatccta |
111 |
Q |
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||||||||| | || || ||||| ||||||||| | || ||||||||| || ||||| ||| | || ||| || ||||||||||||||||||||| |
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| T |
35171461 |
tctgatgttcttgcaggaatggatcaagctattgatgataatgttgatgttatctcaatctcattaggttttaatagtgttccactttatgaagatccag |
35171362 |
T |
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| Q |
112 |
tagcaatagcttcatttgcagctatggaaaaagggattgttgtttcatcttctgc |
166 |
Q |
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| T |
35171361 |
ttgcaatagcttcatttgcagcaatggaaaaaaatgtggttgtttcatcttctgc |
35171307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 172
Target Start/End: Complemental strand, 8946639 - 8946567
Alignment:
| Q |
100 |
atgaagatcctatagcaatagcttcatttgcagctatggaaaaagggattgttgtttcatcttctgcaggtaa |
172 |
Q |
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| T |
8946639 |
atgaagatccgattgcaatagcctcttttgcagctatggaaaaaggtatttttgtgtcttgttcagcaggtaa |
8946567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 172
Target Start/End: Complemental strand, 21687763 - 21687715
Alignment:
| Q |
124 |
catttgcagctatggaaaaagggattgttgtttcatcttctgcaggtaa |
172 |
Q |
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| T |
21687763 |
catttgcagctatggaaaaaggtatttttgtgtctacttctgcaggtaa |
21687715 |
T |
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