View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1714_low_43 (Length: 235)
Name: NF1714_low_43
Description: NF1714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1714_low_43 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 180; Significance: 2e-97; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 13849913 - 13849683
Alignment:
| Q |
1 |
cctatatcagatagtgtagaaatcagaaagttagatatatttgaacattcattcatttgatactacataaatcaagtgcattctgttaactgtttcttca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
13849913 |
cctatatcagatagtgtagaaatcagaaagttagatatatttgaacattcattcatttgatactacataaatcaagtgcattctgttaattgtttcttca |
13849814 |
T |
|
| Q |
101 |
tgactctcttcacaggaccaactgcaagaacaagccaaactataattatgttgacagcttcacc----------gtacaacgctgcgtcgatctgtttac |
190 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
13849813 |
tgactctcttcacaggaccaactgcaagaacaagccaaactataactatgttgacagcttcaccgtacttcaccgtacaacgctgcgtcgatctgtttac |
13849714 |
T |
|
| Q |
191 |
acatatttgtaggata-tttttgaatatttg |
220 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |
|
|
| T |
13849713 |
acatatttgtaggatattttttgaatatttg |
13849683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 72 - 220
Target Start/End: Complemental strand, 13869095 - 13868947
Alignment:
| Q |
72 |
tcaagtgcattctgttaactgtttcttcatgactctcttcacaggaccaactgcaagaacaagccaaactataattatgttgacagcttcaccgtacaac |
171 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
13869095 |
tcaagtgcattctgttaattgtttcttcatgattctcttcacaggaccaactgcaagaacaagccaaactataatt-tgttgacagcttcaccgtacaac |
13868997 |
T |
|
| Q |
172 |
gctgcgtcgatctgtttacacatatttgtaggata-tttttgaatatttg |
220 |
Q |
| |
|
|||||||||||||||| |||||| ||||||||||| |||||||||||||| |
|
|
| T |
13868996 |
gctgcgtcgatctgttaacacatctttgtaggatattttttgaatatttg |
13868947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 141
Target Start/End: Complemental strand, 13896979 - 13896939
Alignment:
| Q |
101 |
tgactctcttcacaggaccaactgcaagaacaagccaaact |
141 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
13896979 |
tgactctcttcacaggagcaactgcaagaacaagctaaact |
13896939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University