View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1714_low_45 (Length: 233)
Name: NF1714_low_45
Description: NF1714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1714_low_45 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 34687201 - 34687433
Alignment:
| Q |
1 |
ttgtatttgtttaggatcacagtgagtttgacaaaactaagaaaatactaactttgtcaaattcaccactaatccaactaaacattcaataattatgaga |
100 |
Q |
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| T |
34687201 |
ttgtatttgtttaggatcacagtgagtttgacaaaactaagaaaatactaactttgtcaaattcaccactaatccaactaaacattcaataattatgaga |
34687300 |
T |
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| Q |
101 |
gctataatctactgtcagttcagcacatgtgagtactgttaacaaccatgtgatcaggtggcagacttgcaaaagtatgaatgcatatatgaagacaaac |
200 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34687301 |
gctataatctactgtcagttcagcgcatgtgagtactgttaacaaccatgtgatcaggtggcagacttgcaaaagtatgaatgcatatatgaagacaaac |
34687400 |
T |
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| Q |
201 |
aaagagaagaattaaaaagtcatactacatatt |
233 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
34687401 |
aaagagaagaattaaaaagtcatactacatatt |
34687433 |
T |
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