View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1714_low_5 (Length: 544)
Name: NF1714_low_5
Description: NF1714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1714_low_5 |
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| [»] scaffold0150 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 302; Significance: 1e-170; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 18 - 469
Target Start/End: Original strand, 17522677 - 17523131
Alignment:
| Q |
18 |
atgaagtagctgttctcggaaatagggttgctgaaaacaaaatttccaatattaagggtgggtttgtgaaagatgtcataactttcatggttatggatga |
117 |
Q |
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| T |
17522677 |
atgaagtagctgttgtcggaaatagggttgctgaaaataaagtttccaatattaagggtgggtttgtgaaagatgtcataactttcatggttatggatga |
17522776 |
T |
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| Q |
118 |
tttggtgattcagcccatgtcaaccatatctagcatcacactgctcaacaagttcaatgtgaaagagatcggtaccttgcaagaaacggtggttgagatg |
217 |
Q |
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| T |
17522777 |
tttggtcattcagcccatgtcaactatatctagcatcacactgctcaacaagtttaatgtgaaagagattggtactctgcaagaaaaagtggttgagatg |
17522876 |
T |
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| Q |
218 |
gggatggatgaggttagtatatattcaatgtgtaaataaacttagtcttgtctaaaatttctgatttgtatttttagatttatatgcnnnnnnnnngtgc |
317 |
Q |
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| T |
17522877 |
gggatggatgaggttagtgtatatacaatgtgtaaacaaactcagtcatgtctaaaatttctgatttgttcttttagatttatatg--tttcttttgtgc |
17522974 |
T |
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| Q |
318 |
tattttgtaacagggaatcaagttgctgaaggcttctctgcaatccaagatggtcttgactaatgtttttctcaagaagcgaaattgatatgagaggaat |
417 |
Q |
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| T |
17522975 |
ttttttgtaacagggaatcaagttgctgaaggcttctctgcaatccaagatggtcttgacaagtgtttttctcaagaagcgaaattgataagagaggaag |
17523074 |
T |
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| Q |
418 |
aacaagacagatcttttaa-----cttcaacatgttaagaagataaaataatgggga |
469 |
Q |
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| T |
17523075 |
aacaagacggatcttttaattcatcttcaaaatgttaagaagataaaataatgggga |
17523131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 80 - 213
Target Start/End: Complemental strand, 17016515 - 17016382
Alignment:
| Q |
80 |
tttgtgaaagatgtcataactttcatggttatggatgatttggtgattcagcccatgtcaaccatatctagcatcacactgctcaacaagttcaatgtga |
179 |
Q |
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| T |
17016515 |
tttgtgaaagatgttgtgactttcatggtcatggatgatttgtcaattcagcccatgccgaccttatcaggcattaccatacttaacaagttcaacatca |
17016416 |
T |
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| Q |
180 |
aagagatcggtaccttgcaagaaacggtggttga |
213 |
Q |
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| T |
17016415 |
aagagatgggtaccttacaagaaatggtagttga |
17016382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 80 - 213
Target Start/End: Complemental strand, 17546952 - 17546819
Alignment:
| Q |
80 |
tttgtgaaagatgtcataactttcatggttatggatgatttggtgattcagcccatgtcaaccatatctagcatcacactgctcaacaagttcaatgtga |
179 |
Q |
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| T |
17546952 |
tttgtgaaagatgttgtgactttcatggtcatggatgatttgtcaattcagcccatgccgaccttatcaggcattaccatacttaacaagttcaacatca |
17546853 |
T |
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| Q |
180 |
aagagatcggtaccttgcaagaaacggtggttga |
213 |
Q |
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| T |
17546852 |
aagagatgggtaccttacaagaaatggtagttga |
17546819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 396
Target Start/End: Complemental strand, 17016236 - 17016177
Alignment:
| Q |
337 |
aagttgctgaaggcttctctgcaatccaagatggtcttgactaatgtttttctcaagaag |
396 |
Q |
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| T |
17016236 |
aagttgcttaaggcttctctgcaatcaaagatggtattgacgagtgttttcatcaagaag |
17016177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 396
Target Start/End: Complemental strand, 17546673 - 17546614
Alignment:
| Q |
337 |
aagttgctgaaggcttctctgcaatccaagatggtcttgactaatgtttttctcaagaag |
396 |
Q |
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| T |
17546673 |
aagttgcttaaggcttctctgcaatcaaagatggtattgacgagtgttttcatcaagaag |
17546614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 6e-23; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 320 - 419
Target Start/End: Complemental strand, 52145088 - 52144989
Alignment:
| Q |
320 |
ttttgtaacagggaatcaagttgctgaaggcttctctgcaatccaagatggtcttgactaatgtttttctcaagaagcgaaattgatatgagaggaataa |
419 |
Q |
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| T |
52145088 |
ttttgtaacagggtatcaagttgctaaaggcttctctgcaatccaaaatggtattgacaagtgttttcctcaagaaggaaaattgatatgcaaggaataa |
52144989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 43 - 139
Target Start/End: Complemental strand, 52145346 - 52145250
Alignment:
| Q |
43 |
ggttgctgaaaacaaaatttccaatattaagggtgggtttgtgaaagatgtcataactttcatggttatggatgatttggtgattcagcccatgtca |
139 |
Q |
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| T |
52145346 |
ggttgctaaaaagagagtttccaatattaagagtgggtttgtgaaagatattataatttttatggtgatggatgatttagtgattcagcccatgtca |
52145250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 80 - 231
Target Start/End: Complemental strand, 52133470 - 52133319
Alignment:
| Q |
80 |
tttgtgaaagatgtcataactttcatggttatggatgatttggtgattcagcccatgtcaaccatatctagcatcacactgctcaacaagttcaatgtga |
179 |
Q |
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| T |
52133470 |
tttgtgaaagatgttgtgacatttatggtgatggatgatttagtcgttcagccaatgtcaacaatatcaagcattactttgctgaacaaattcaatatca |
52133371 |
T |
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| Q |
180 |
aagagatcggtaccttgcaagaaacggtggttgagatggggatggatgaggt |
231 |
Q |
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| T |
52133370 |
aggaggttggtgcgttgcaggaaaaggttgttgagatgggaatggatgaggt |
52133319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 231
Target Start/End: Complemental strand, 52145241 - 52145174
Alignment:
| Q |
164 |
aacaagttcaatgtgaaagagatcggtaccttgcaagaaacggtggttgagatggggatggatgaggt |
231 |
Q |
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| T |
52145241 |
aacaaattcaaagtgaaagagattgaaaccttgcaagaaaaggttgttgagatgggaatagatgaggt |
52145174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0150 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: scaffold0150
Description:
Target: scaffold0150; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 67 - 231
Target Start/End: Complemental strand, 8693 - 8529
Alignment:
| Q |
67 |
tattaagggtgggtttgtgaaagatgtcataactttcatggttatggatgatttggtgattcagcccatgtcaaccatatctagcatcacactgctcaac |
166 |
Q |
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||||||| ||| |||||||||||||| | || || ||||| ||||| ||||| ||| ||||||| |||||||||||||| ||||| || |||| ||| |
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| T |
8693 |
tattaagaatggttttgtgaaagatgttgtgacatttatggtaatggacgatttagtggttcagccaatgtcaaccatatcaagcattactttgctgaac |
8594 |
T |
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| Q |
167 |
aagttcaatgtgaaagagatcggtaccttgcaagaaacggtggttgagatggggatggatgaggt |
231 |
Q |
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|| |||||| | || ||| | ||||||||||| |||| ||| ||||||||||| ||||||||||| |
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| T |
8593 |
aaattcaatatcaaggaggttggtaccttgcaggaaaaggttgttgagatgggaatggatgaggt |
8529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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