View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1714_low_6 (Length: 511)

Name: NF1714_low_6
Description: NF1714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1714_low_6
NF1714_low_6
[»] chr2 (23 HSPs)
chr2 (16-494)||(37986751-37987233)
chr2 (30-109)||(23354646-23354725)
chr2 (22-109)||(38919184-38919271)
chr2 (42-107)||(25544479-25544544)
chr2 (30-109)||(23354989-23355068)
chr2 (51-154)||(24011043-24011146)
chr2 (39-105)||(10535757-10535823)
chr2 (23-93)||(12748663-12748733)
chr2 (30-70)||(12464882-12464922)
chr2 (54-138)||(11307963-11308053)
chr2 (91-172)||(4207909-4207989)
chr2 (36-113)||(19573970-19574047)
chr2 (23-68)||(38117194-38117239)
chr2 (23-62)||(26769490-26769529)
chr2 (23-70)||(42205868-42205915)
chr2 (30-68)||(15972859-15972897)
chr2 (30-79)||(10735202-10735251)
chr2 (33-86)||(12668440-12668493)
chr2 (30-86)||(12940952-12941008)
chr2 (30-86)||(18841030-18841086)
chr2 (30-86)||(20539691-20539747)
chr2 (38-86)||(30335411-30335459)
chr2 (103-147)||(41849354-41849398)
[»] chr7 (21 HSPs)
chr7 (30-130)||(4017767-4017867)
chr7 (36-124)||(38804534-38804622)
chr7 (42-145)||(7133236-7133339)
chr7 (15-109)||(29812658-29812750)
chr7 (29-132)||(23930204-23930307)
chr7 (30-108)||(43249979-43250057)
chr7 (51-145)||(5938479-5938573)
chr7 (51-100)||(23751907-23751956)
chr7 (30-87)||(30516373-30516430)
chr7 (30-86)||(27945027-27945083)
chr7 (51-114)||(10230062-10230125)
chr7 (36-90)||(23128674-23128728)
chr7 (33-70)||(927870-927907)
chr7 (51-100)||(22683758-22683807)
chr7 (29-86)||(22868027-22868084)
chr7 (25-66)||(29788689-29788729)
chr7 (30-66)||(6630949-6630985)
chr7 (30-86)||(9408351-9408407)
chr7 (30-86)||(15902808-15902864)
chr7 (30-86)||(23191882-23191938)
chr7 (30-86)||(32308106-32308162)
[»] chr5 (19 HSPs)
chr5 (51-130)||(43554528-43554607)
chr5 (30-145)||(26205718-26205833)
chr5 (51-137)||(25863211-25863297)
chr5 (35-93)||(42469212-42469270)
chr5 (53-113)||(39695989-39696049)
chr5 (31-124)||(14574029-14574121)
chr5 (30-145)||(21137675-21137788)
chr5 (31-100)||(7997169-7997238)
chr5 (23-68)||(31084302-31084347)
chr5 (43-100)||(31264437-31264494)
chr5 (31-86)||(24906318-24906373)
chr5 (30-85)||(36642780-36642835)
chr5 (30-68)||(9449455-9449493)
chr5 (30-88)||(9878047-9878105)
chr5 (42-90)||(2577193-2577241)
chr5 (30-86)||(14674255-14674311)
chr5 (30-90)||(15410461-15410521)
chr5 (23-107)||(35252310-35252392)
chr5 (30-70)||(41558716-41558756)
[»] chr3 (33 HSPs)
chr3 (36-169)||(25074781-25074914)
chr3 (30-154)||(25651980-25652104)
chr3 (30-117)||(14223839-14223926)
chr3 (41-114)||(25892457-25892530)
chr3 (45-130)||(27903633-27903718)
chr3 (13-110)||(41319303-41319400)
chr3 (36-100)||(15864825-15864889)
chr3 (23-86)||(20503444-20503507)
chr3 (45-123)||(25326427-25326505)
chr3 (43-100)||(34189426-34189483)
chr3 (51-131)||(12704629-12704709)
chr3 (36-114)||(8903424-8903501)
chr3 (23-88)||(10954930-10954996)
chr3 (30-100)||(24205044-24205114)
chr3 (23-68)||(21479097-21479142)
chr3 (52-113)||(34307770-34307831)
chr3 (23-68)||(40052311-40052356)
chr3 (23-67)||(14747540-14747584)
chr3 (30-85)||(10335304-10335359)
chr3 (23-90)||(20691298-20691365)
chr3 (51-130)||(21211295-21211374)
chr3 (25-68)||(26290352-26290395)
chr3 (22-60)||(39756214-39756252)
chr3 (51-109)||(52369782-52369840)
chr3 (13-98)||(1830312-1830397)
chr3 (51-100)||(3730168-3730217)
chr3 (30-86)||(8383243-8383299)
chr3 (30-86)||(10268503-10268559)
chr3 (30-86)||(15796311-15796367)
chr3 (41-85)||(16789668-16789712)
chr3 (42-70)||(26665134-26665162)
chr3 (30-113)||(29508430-29508514)
chr3 (30-86)||(55401061-55401117)
[»] chr6 (34 HSPs)
chr6 (30-130)||(17168436-17168536)
chr6 (30-145)||(26247412-26247526)
chr6 (24-145)||(34446545-34446666)
chr6 (30-106)||(6389729-6389805)
chr6 (23-107)||(19602177-19602261)
chr6 (30-106)||(2153884-2153960)
chr6 (25-70)||(4937573-4937618)
chr6 (25-70)||(4953282-4953327)
chr6 (42-100)||(13689196-13689254)
chr6 (23-68)||(12868710-12868755)
chr6 (30-86)||(5732527-5732583)
chr6 (30-86)||(7938102-7938158)
chr6 (30-86)||(16833294-16833350)
chr6 (30-97)||(3398605-3398671)
chr6 (30-97)||(7625108-7625175)
chr6 (31-90)||(9024189-9024248)
chr6 (57-131)||(4420156-4420225)
chr6 (37-99)||(6299505-6299567)
chr6 (37-99)||(6306315-6306377)
chr6 (30-68)||(8777008-8777046)
chr6 (30-76)||(10760868-10760914)
chr6 (23-68)||(5626731-5626776)
chr6 (51-100)||(12235522-12235571)
chr6 (31-84)||(17422274-17422327)
chr6 (30-74)||(677823-677867)
chr6 (30-86)||(7996395-7996451)
chr6 (30-86)||(8022350-8022406)
chr6 (30-62)||(8365560-8365592)
chr6 (30-86)||(10770691-10770747)
chr6 (30-86)||(12696310-12696366)
chr6 (30-86)||(16766683-16766739)
chr6 (30-86)||(17841606-17841662)
chr6 (32-68)||(32313392-32313428)
chr6 (30-86)||(34595120-34595176)
[»] chr1 (19 HSPs)
chr1 (51-154)||(42004897-42004999)
chr1 (51-118)||(6936385-6936452)
chr1 (23-86)||(22881633-22881696)
chr1 (52-170)||(20157283-20157401)
chr1 (42-116)||(40747760-40747834)
chr1 (23-145)||(17831486-17831611)
chr1 (23-67)||(3490426-3490470)
chr1 (23-67)||(6427440-6427484)
chr1 (30-86)||(46348400-46348456)
chr1 (30-93)||(36878447-36878510)
chr1 (30-68)||(37598818-37598856)
chr1 (25-98)||(39101187-39101258)
chr1 (31-68)||(609493-609530)
chr1 (31-68)||(10572624-10572661)
chr1 (43-96)||(45660776-45660829)
chr1 (30-86)||(1815243-1815299)
chr1 (26-86)||(24577203-24577263)
chr1 (30-86)||(38503306-38503362)
chr1 (30-62)||(48040503-48040535)
[»] chr4 (17 HSPs)
chr4 (36-132)||(24343499-24343595)
chr4 (31-154)||(20743221-20743350)
chr4 (51-145)||(3144611-3144704)
chr4 (30-132)||(7012052-7012160)
chr4 (25-145)||(31243500-31243626)
chr4 (37-172)||(53381527-53381658)
chr4 (36-109)||(6273936-6274009)
chr4 (51-131)||(18513213-18513293)
chr4 (26-114)||(23386127-23386216)
chr4 (30-86)||(16303283-16303339)
chr4 (53-93)||(49659533-49659573)
chr4 (35-68)||(12895309-12895342)
chr4 (30-118)||(20521836-20521922)
chr4 (30-62)||(19482654-19482686)
chr4 (30-86)||(21945489-21945545)
chr4 (30-86)||(36635310-36635366)
chr4 (45-93)||(50848313-50848361)
[»] chr8 (21 HSPs)
chr8 (36-145)||(14513132-14513241)
chr8 (42-109)||(13845232-13845299)
chr8 (30-113)||(3658133-3658216)
chr8 (29-108)||(44067501-44067580)
chr8 (30-100)||(39820415-39820485)
chr8 (51-100)||(35431143-35431192)
chr8 (25-85)||(11815810-11815870)
chr8 (24-107)||(40063933-40064014)
chr8 (30-93)||(28883888-28883951)
chr8 (30-113)||(15816113-15816202)
chr8 (51-100)||(1676719-1676768)
chr8 (25-86)||(13844613-13844674)
chr8 (30-86)||(4673442-4673498)
chr8 (26-86)||(4786355-4786415)
chr8 (51-135)||(8017493-8017577)
chr8 (52-95)||(12559114-12559157)
chr8 (30-68)||(36450789-36450827)
chr8 (35-104)||(18130531-18130600)
chr8 (42-106)||(13009490-13009554)
chr8 (24-68)||(14227202-14227246)
chr8 (30-86)||(20873055-20873111)
[»] scaffold0007 (1 HSPs)
scaffold0007 (30-108)||(225263-225341)
[»] scaffold0598 (1 HSPs)
scaffold0598 (30-109)||(8047-8126)
[»] scaffold0306 (1 HSPs)
scaffold0306 (30-68)||(13386-13424)
[»] scaffold0152 (1 HSPs)
scaffold0152 (30-68)||(21903-21941)
[»] scaffold0199 (1 HSPs)
scaffold0199 (51-100)||(1956-2005)
[»] scaffold0019 (1 HSPs)
scaffold0019 (22-67)||(71701-71746)
[»] scaffold0122 (1 HSPs)
scaffold0122 (22-74)||(7988-8040)
[»] scaffold0778 (1 HSPs)
scaffold0778 (41-115)||(4403-4477)
[»] scaffold0036 (1 HSPs)
scaffold0036 (105-143)||(35677-35715)
[»] scaffold0018 (1 HSPs)
scaffold0018 (30-68)||(178854-178892)
[»] scaffold0103 (1 HSPs)
scaffold0103 (30-86)||(51797-51853)
[»] scaffold0053 (1 HSPs)
scaffold0053 (30-86)||(8784-8840)
[»] scaffold0049 (1 HSPs)
scaffold0049 (54-90)||(56932-56968)
[»] scaffold0022 (1 HSPs)
scaffold0022 (30-86)||(90829-90885)
[»] scaffold0004 (1 HSPs)
scaffold0004 (30-86)||(92793-92849)


Alignment Details
Target: chr2 (Bit Score: 380; Significance: 0; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 16 - 494
Target Start/End: Original strand, 37986751 - 37987233
Alignment:
Q  16 acagactcggacacgacactgacacgccgacacaaataataatttgagaaaatgatatatttgagtgtaatcataggtatcgtgttggtgtcggacaccg 115  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37986751 acagactcggacacgacactgacacgccgacacagataataatttgaaaaaatgatatatttgagtgtaatcataggtatcgtgttggtgtcggacaccg 37986850  T
Q  116 acgagtgtctgacaccgaaacacacctaattcgaagagtattcatgtttcataggtt----aagataacnnnnnnnnnnnnnnnnnncttatctaaaggt 211  Q
    ||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||    ||||||||                  |||||||||||||    
T  37986851 acgagtgtctgacacggaaacaaacctaatccgaagagtattcatgtttcataggttgattaagataacaaaacaaaaataaaaaaacttatctaaaggt 37986950  T
Q  212 taagattaaaaaattagctgtatcatttctatttctgtatataatacaaggcaatgcctcattttatgcttgggtagttgagatctctctctcttttata 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  37986951 taagattaaaaaattagctgtatcatttctatttctgtatataatacaaggcaatgcctcattttatgcttgagtagttgagatctctctctcttttata 37987050  T
Q  312 ttcttttagaacaagttgttttctttaatctttcttgtcccaaatctaatctatatatctagcactctttccaaaaagtttaagagtgaactaacataat 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37987051 ttcttttagaacaagttgttttctttaatctttcttgtcccaaatctaatctatatatctagcactctttccaaaaagtttaagagtgaactaacataat 37987150  T
Q  412 tgtttgaaattggaaaagatttaaagggatttatatgagctaagatattctccaagttgttccaaacatggaggaggcaatca 494  Q
    |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  37987151 tgtttgaaattggaaaagatttaaagagatttatacgagctaagatattctccaagttgttccaaacatggaggaggcaatca 37987233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 30 - 109
Target Start/End: Complemental strand, 23354725 - 23354646
Alignment:
Q  30 gacactgacacgccgacacaaataataatttgagaaaatgatatatttgagtgtaatcataggtatcgtgttggtgtcgg 109  Q
    ||||| |||| || |||||| |||||||||||||||||||||||| || ||||||||||||||| |||||| ||||||||    
T  23354725 gacaccgacatgctgacacagataataatttgagaaaatgatataatttagtgtaatcataggtgtcgtgtcggtgtcgg 23354646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 22 - 109
Target Start/End: Original strand, 38919184 - 38919271
Alignment:
Q  22 tcggacacgacactgacacgccgacacaaataataatttgagaaaatgatatatttgagtgtaatcataggtatcgtgttggtgtcgg 109  Q
    ||||||| |||||  |||| |||| ||| ||||||||||||||||||| |||| || ||||||||||||||| ||||||| |||||||    
T  38919184 tcggacatgacacgaacacaccgatacagataataatttgagaaaatgttatagtttagtgtaatcataggtgtcgtgttagtgtcgg 38919271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 42 - 107
Target Start/End: Original strand, 25544479 - 25544544
Alignment:
Q  42 ccgacacaaataataatttgagaaaatgatatatttgagtgtaatcataggtatcgtgttggtgtc 107  Q
    |||||||  |||||||||||||||||||||||| || ||||||||||||||| |||||| ||||||    
T  25544479 ccgacacgtataataatttgagaaaatgatataattcagtgtaatcataggtgtcgtgtcggtgtc 25544544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 30 - 109
Target Start/End: Complemental strand, 23355068 - 23354989
Alignment:
Q  30 gacactgacacgccgacacaaataataatttgagaaaatgatatatttgagtgtaatcataggtatcgtgttggtgtcgg 109  Q
    ||||| |||| || |||||| |||||||||||||||||||||||| || |||| |||||||||| || ||| ||||||||    
T  23355068 gacaccgacatgctgacacagataataatttgagaaaatgatataatttagtgcaatcataggtgtcatgtcggtgtcgg 23354989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 51 - 154
Target Start/End: Original strand, 24011043 - 24011146
Alignment:
Q  51 ataataatttgagaaaatgatatatttgagtgtaatcataggtatcgtgttggtgtcggacaccgacgagtgtctgacaccgaaacacacctaattcgaa 150  Q
    |||||||||||||||||||| ||| || ||||||||||||||| ||| || |||||| || || || | ||||| |||||| | |||||| |||| ||||    
T  24011043 ataataatttgagaaaatgacataatttagtgtaatcataggtgtcgcgtcggtgtctgatacggatgcgtgtccgacaccaagacacacataatccgaa 24011142  T
Q  151 gagt 154  Q
    ||||    
T  24011143 gagt 24011146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 39 - 105
Target Start/End: Complemental strand, 10535823 - 10535757
Alignment:
Q  39 acgccgacacaaataataatttgagaaaatgatatatttgagtgtaatcataggtatcgtgttggtg 105  Q
    ||||||||||  |||||||||||||||||||| ||| || |||||||||||| || |||||||||||    
T  10535823 acgccgacaccgataataatttgagaaaatgacataattcagtgtaatcataagtgtcgtgttggtg 10535757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 23 - 93
Target Start/End: Original strand, 12748663 - 12748733
Alignment:
Q  23 cggacacgacactgacacgccgacacaaataataatttgagaaaatgatatatttgagtgtaatcataggt 93  Q
    |||||||||||| ||||||| ||||   |||||||||||||||||||| ||| || |||||||||||||||    
T  12748663 cggacacgacacggacacgctgacatggataataatttgagaaaatgacatagttcagtgtaatcataggt 12748733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 30 - 70
Target Start/End: Complemental strand, 12464922 - 12464882
Alignment:
Q  30 gacactgacacgccgacacaaataataatttgagaaaatga 70  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  12464922 gacactgacacgccgacaccaataataatttgagaaaatga 12464882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 54 - 138
Target Start/End: Complemental strand, 11308053 - 11307963
Alignment:
Q  54 ataatttgagaaaatgatatatttgagtgtaatcataggtatcgtgttggtgtc------ggacaccgacgagtgtctgacaccgaaacac 138  Q
    ||||||||| ||||||| ||| || ||||||||||||||| |||||| ||||||      ||||||||||| ||||| |||||||||||||    
T  11308053 ataatttgaaaaaatgacataattcagtgtaatcataggtgtcgtgtcggtgtcggtgttggacaccgacgcgtgtccgacaccgaaacac 11307963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 91 - 172
Target Start/End: Original strand, 4207909 - 4207989
Alignment:
Q  91 ggtatcgtgttggtgtcggacaccgacgagtgtctgacaccgaaacacacctaattcgaagagtattcatgtttcataggtt 172  Q
    |||||||||| |||||||||||| |||  ||||  |||||||||||||   |||| |||||||| |||||||||||||||||    
T  4207909 ggtatcgtgtcggtgtcggacac-gacacgtgttcgacaccgaaacacgtttaatccgaagagtgttcatgtttcataggtt 4207989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 36 - 113
Target Start/End: Original strand, 19573970 - 19574047
Alignment:
Q  36 gacacgccgacacaaataataatttgagaaaatgatatatttgagtgtaatcataggtatcgtgttggtgtcggacac 113  Q
    |||||||||||||  |||||||||| ||||||| | ||| || |||||||| ||||||  ||||| ||||||||||||    
T  19573970 gacacgccgacaccgataataatttaagaaaataacataattcagtgtaattataggtggcgtgtcggtgtcggacac 19574047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 23 - 68
Target Start/End: Complemental strand, 38117239 - 38117194
Alignment:
Q  23 cggacacgacactgacacgccgacacaaataataatttgagaaaat 68  Q
    |||||||||||||||||||||||||||  ||||||||||| |||||    
T  38117239 cggacacgacactgacacgccgacacagctaataatttgaaaaaat 38117194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 62
Target Start/End: Original strand, 26769490 - 26769529
Alignment:
Q  23 cggacacgacactgacacgccgacacaaataataatttga 62  Q
    |||||||||||| ||||||||||||||| |||||||||||    
T  26769490 cggacacgacacagacacgccgacacaactaataatttga 26769529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 42205915 - 42205868
Alignment:
Q  23 cggacacgacactgacacgccgacacaaataataatttgagaaaatga 70  Q
    ||||||||||| ||||| ||| |||| |||||||||||||||||||||    
T  42205915 cggacacgacattgacatgccaacaccaataataatttgagaaaatga 42205868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 30 - 68
Target Start/End: Original strand, 15972859 - 15972897
Alignment:
Q  30 gacactgacacgccgacacaaataataatttgagaaaat 68  Q
    ||||||||||||||||||||| ||||||||||| |||||    
T  15972859 gacactgacacgccgacacaattaataatttgaaaaaat 15972897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 79
Target Start/End: Original strand, 10735202 - 10735251
Alignment:
Q  30 gacactgacacgccgacacaaataataatttgagaaaatgatatatttga 79  Q
    |||| ||||||| |||||| |||||||||||| |||||||| ||||||||    
T  10735202 gacattgacacgacgacaccaataataatttgggaaaatgaaatatttga 10735251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 86
Target Start/End: Complemental strand, 12668493 - 12668440
Alignment:
Q  33 actgacacgccgacacaaataataatttgagaaaatgatatatttgagtgtaat 86  Q
    ||||||||||||||| || ||||||||||| ||||||| ||| || ||||||||    
T  12668493 actgacacgccgacataactaataatttgaaaaaatgacataattcagtgtaat 12668440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 30 - 86
Target Start/End: Complemental strand, 12941008 - 12940952
Alignment:
Q  30 gacactgacacgccgacacaaataataatttgagaaaatgatatatttgagtgtaat 86  Q
    ||||||||||||  ||||||| ||||||||||| ||||| ||||| || ||||||||    
T  12941008 gacactgacacgttgacacaactaataatttgaaaaaatcatataattcagtgtaat 12940952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 30 - 86
Target Start/End: Complemental strand, 18841086 - 18841030
Alignment:
Q  30 gacactgacacgccgacacaaataataatttgagaaaatgatatatttgagtgtaat 86  Q
    ||||||||||||| ||||||| ||||||||||| ||||| | ||| || ||||||||    
T  18841086 gacactgacacgctgacacaactaataatttgaaaaaattacataattaagtgtaat 18841030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 30 - 86
Target Start/End: Complemental strand, 20539747 - 20539691
Alignment:
Q  30 gacactgacacgccgacacaaataataatttgagaaaatgatatatttgagtgtaat 86  Q
    |||||||||||| |||||||  ||||||||||| ||||| ||||| || ||||||||    
T  20539747 gacactgacacgtcgacacagctaataatttgaaaaaatcatataatttagtgtaat 20539691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 38 - 86
Target Start/End: Original strand, 30335411 - 30335459
Alignment:
Q  38 cacgccgacacaaataataatttgagaaaatgatatatttgagtgtaat 86  Q
    ||||||||||||| ||||||||||| ||||||| ||| || ||||||||    
T  30335411 cacgccgacacaactaataatttgaaaaaatgacataatttagtgtaat 30335459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 103 - 147
Target Start/End: Original strand, 41849354 - 41849398
Alignment:
Q  103 gtgtcggacaccgacgagtgtctgacaccgaaacacacctaattc 147  Q
    |||||||||||||||| |||||||||||||  |||| ||||||||    
T  41849354 gtgtcggacaccgacgcgtgtctgacaccgcgacacgcctaattc 41849398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 30 - 130
Target Start/End: Complemental strand, 4017867 - 4017767
Alignment:
Q  30 gacactgacacgccgacacaaataataatttgagaaaatgatatatttgagtgtaatcataggtatcgtgttggtgtcggacaccgacgagtgtctgaca 129  Q
    ||||| |||||||||||||  ||||||||||||||||| |||||| || |||||||||||| || |||||||||||||||||||||||| ||||||||||    
T  4017867 gacaccgacacgccgacacggataataatttgagaaaacgatataatttagtgtaatcataagtgtcgtgttggtgtcggacaccgacgtgtgtctgaca 4017768  T
Q  130 c 130  Q
    |    
T  4017767 c 4017767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 36 - 124
Target Start/End: Complemental strand, 38804622 - 38804534
Alignment:
Q  36 gacacgccgacacaaataataatttgagaaaatgatatatttgagtgtaatcataggtatcgtgttggtgtcggacaccgacgagtgtc 124  Q
    |||||||||||||  |||||||||| ||||||||| ||| |  || |||||||||||| |||||||||||||||||||||||| |||||    
T  38804622 gacacgccgacacggataataatttcagaaaatgacataatccagggtaatcataggtgtcgtgttggtgtcggacaccgacgtgtgtc 38804534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 42 - 145
Target Start/End: Complemental strand, 7133339 - 7133236
Alignment:
Q  42 ccgacacaaataataatttgagaaaatgatatatttgagtgtaatcataggtatcgtgttggtgtcggacaccgacgagtgtctgacaccgaaacacacc 141  Q
    |||||||| || ||||||||||||||||| ||| || |||||||||||||||   |||| ||||||||||||||||| ||||| ||||| |  |||||||    
T  7133339 ccgacacagatgataatttgagaaaatgacataattcagtgtaatcataggtggtgtgtcggtgtcggacaccgacgcgtgtccgacactgggacacacc 7133240  T
Q  142 taat 145  Q
    ||||    
T  7133239 taat 7133236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 15 - 109
Target Start/End: Complemental strand, 29812750 - 29812658
Alignment:
Q  15 cacagactcggacacgacactgacacgccgacacaaataataatttgagaaaatgatatatttgagtgtaatcataggtatcgtgttggtgtcgg 109  Q
    ||||||| |||||||||||| |||||  |||| |  |||||||||||||||||||||||| || ||||||||||||||| |||||| ||||||||    
T  29812750 cacagacacggacacgacacggacac--cgacccgtataataatttgagaaaatgatataatttagtgtaatcataggtgtcgtgtcggtgtcgg 29812658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 29 - 132
Target Start/End: Original strand, 23930204 - 23930307
Alignment:
Q  29 cgacactgacacgccgacacaaataataatttgagaaaatgatatatttgagtgtaatcataggtatcgtgttggtgtcggacaccgacgagtgtctgac 128  Q
    ||||| ||||||  ||||||  ||| |||||||||||||||| ||| || ||||||||||||||| | |||| ||||||||| ||||| | ||||| |||    
T  23930204 cgacattgacacatcgacacggatagtaatttgagaaaatgacataattcagtgtaatcataggtgttgtgtcggtgtcggataccgatgcgtgtccgac 23930303  T
Q  129 accg 132  Q
    ||||    
T  23930304 accg 23930307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 30 - 108
Target Start/End: Original strand, 43249979 - 43250057
Alignment:
Q  30 gacactgacacgccgacacaaataataatttgagaaaatgatatatttgagtgtaatcataggtatcgtgttggtgtcg 108  Q
    |||||||||||||||||||  |||||||||||||||||||| ||| |  |||||||| ||| || |||||| |||||||    
T  43249979 gacactgacacgccgacacggataataatttgagaaaatgacataatacagtgtaattataagtgtcgtgtcggtgtcg 43250057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 51 - 145
Target Start/End: Original strand, 5938479 - 5938573
Alignment:
Q  51 ataataatttgagaaaatgatatatttgagtgtaatcataggtatcgtgttggtgtcggacaccgacgagtgtctgacaccgaaacacacctaat 145  Q
    |||||||||||| ||||| | ||| || ||| |||| |||||| | |||| |||||| |||||||| | ||||| ||||||| ||||||||||||    
T  5938479 ataataatttgataaaataacataattcagtataattataggtgttgtgtcggtgtcagacaccgatgcgtgtccgacaccggaacacacctaat 5938573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 51 - 100
Target Start/End: Original strand, 23751907 - 23751956
Alignment:
Q  51 ataataatttgagaaaatgatatatttgagtgtaatcataggtatcgtgt 100  Q
    |||||||||||| ||||||||||| || ||||||||||||||| ||||||    
T  23751907 ataataatttgataaaatgatataatttagtgtaatcataggtgtcgtgt 23751956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 30 - 87
Target Start/End: Complemental strand, 30516430 - 30516373
Alignment:
Q  30 gacactgacacgccgacacaaataataatttgagaaaatgatatatttgagtgtaatc 87  Q
    |||||||||||| |||||| || |||||||||||||||||||||| || | |||||||    
T  30516430 gacactgacacgtcgacactaacaataatttgagaaaatgatataattcaatgtaatc 30516373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 30 - 86
Target Start/End: Original strand, 27945027 - 27945083
Alignment:
Q  30 gacactgacacgccgacacaaataataatttgagaaaatgatatatttgagtgtaat 86  Q
    ||||||||||||||||||| | ||||||||||||||||| | ||| || ||||||||    
T  27945027 gacactgacacgccgacaccactaataatttgagaaaattacataattcagtgtaat 27945083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 51 - 114
Target Start/End: Complemental strand, 10230125 - 10230062
Alignment:
Q  51 ataataatttgagaaaatgatatatttgagtgtaatcataggtatcgtgttggtgtcggacacc 114  Q
    ||||||||||||| |||||| ||| || |||||||  |||| | ||||||||||||||||||||    
T  10230125 ataataatttgaggaaatgacataattcagtgtaagtatagatgtcgtgttggtgtcggacacc 10230062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 36 - 90
Target Start/End: Complemental strand, 23128728 - 23128674
Alignment:
Q  36 gacacgccgacacaaataataatttgagaaaatgatatatttgagtgtaatcata 90  Q
    ||||||| ||||| ||||||||||||||||||  ||||| || ||||||||||||    
T  23128728 gacacgctgacaccaataataatttgagaaaaccatataattcagtgtaatcata 23128674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 70
Target Start/End: Complemental strand, 927907 - 927870
Alignment:
Q  33 actgacacgccgacacaaataataatttgagaaaatga 70  Q
    ||||||||| |||||| |||||||||||||||||||||    
T  927907 actgacacgtcgacactaataataatttgagaaaatga 927870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 100
Target Start/End: Complemental strand, 22683807 - 22683758
Alignment:
Q  51 ataataatttgagaaaatgatatatttgagtgtaatcataggtatcgtgt 100  Q
    ||||||||||||||| |||||||| || |||| |||||||||| ||||||    
T  22683807 ataataatttgagaatatgatataattcagtgcaatcataggtgtcgtgt 22683758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 86
Target Start/End: Original strand, 22868027 - 22868084
Alignment:
Q  29 cgacactgacacgccgacacaaataataatttgagaaaatgatatatttgagtgtaat 86  Q
    |||||||||||||||||||| | ||||||| ||||||||| | ||| || ||||||||    
T  22868027 cgacactgacacgccgacaccactaataatatgagaaaatcacataattcagtgtaat 22868084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 29788729 - 29788689
Alignment:
Q  25 gacacgacactgacacgccgacacaaataataatttgagaaa 66  Q
    ||||||||||||||||| |||||| |||||||||||||||||    
T  29788729 gacacgacactgacacgtcgacac-aataataatttgagaaa 29788689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 6630985 - 6630949
Alignment:
Q  30 gacactgacacgccgacacaaataataatttgagaaa 66  Q
    ||||||||||||||||||| | |||||||||||||||    
T  6630985 gacactgacacgccgacaccactaataatttgagaaa 6630949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 30 - 86
Target Start/End: Complemental strand, 9408407 - 9408351
Alignment:
Q  30 gacactgacacgccgacacaaataataatttgagaaaatgatatatttgagtgtaat 86  Q
    ||||||||||| ||||||||| ||||||||||| ||||| | ||| || ||||||||    
T  9408407 gacactgacacaccgacacaattaataatttgaaaaaatcacataatttagtgtaat 9408351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 30 - 86
Target Start/End: Original strand, 15902808 - 15902864
Alignment:
Q  30 gacactgacacgccgacacaaataataatttgagaaaatgatatatttgagtgtaat 86  Q
    |||||||||| |||||||| ||||||||||||| ||||| | ||| || ||||||||    
T  15902808 gacactgacatgccgacaccaataataatttgataaaatcacataatttagtgtaat 15902864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 30 - 86
Target Start/End: Original strand, 23191882 - 23191938
Alignment:
Q  30 gacactgacacgccgacacaaataataatttgagaaaatgatatatttgagtgtaat 86  Q
    |||||||| ||||||||||   ||||||||||||||||| | |||||| ||||||||    
T  23191882 gacactgatacgccgacaccgctaataatttgagaaaatcacatatttcagtgtaat 23191938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 30 - 86
Target Start/End: Original strand, 32308106 - 32308162
Alignment:
Q  30 gacactgacacgccgacacaaataataatttgagaaaatgatatatttgagtgtaat 86  Q
    |||||||||||||||||||   ||||||||||||||||| | ||| || ||||||||    
T  32308106 gacactgacacgccgacaccgctaataatttgagaaaatcacataattcagtgtaat 32308162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 6e-23; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 51 - 130
Target Start/End: Original strand, 43554528 - 43554607
Alignment:
Q  51 ataataatttgagaaaatgatatatttgagtgtaatcataggtatcgtgttggtgtcggacaccgacgagtgtctgacac 130  Q
    |||||||||||||||||||||||| || ||||||||||||||| |||||| ||||||||||||||||| ||||| |||||    
T  43554528 ataataatttgagaaaatgatataatttagtgtaatcataggtgtcgtgtcggtgtcggacaccgacgcgtgtccgacac 43554607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 30 - 145
Target Start/End: Complemental strand, 26205833 - 26205718
Alignment:
Q  30 gacactgacacgccgacacaaataataatttgagaaaatgatatatttgagtgtaatcataggtatcgtgttggtgtcggacaccgacgagtgtctgaca 129  Q
    |||||||||||| ||| ||  |||| | ||||||||||||| ||| || ||||||||||||||| |||||||||||||||||||| ||| || || ||||    
T  26205833 gacactgacacgtcgataccgataaaattttgagaaaatgacataattcagtgtaatcataggtgtcgtgttggtgtcggacaccaacgcgtatccgaca 26205734  T
Q  130 ccgaaacacacctaat 145  Q
    |||  |||||| ||||    
T  26205733 ccgggacacacgtaat 26205718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 51 - 137
Target Start/End: Original strand, 25863211 - 25863297
Alignment:
Q  51 ataataatttgagaaaatgatatatttgagtgtaatcataggtatcgtgttggtgtcggacaccgacgagtgtctgacaccgaaaca 137  Q
    |||||||||||||||||||||||| || |||||||| ||| || ||||||  ||||||| |||||| | ||||||||||||| ||||    
T  25863211 ataataatttgagaaaatgatataattcagtgtaattataagtgtcgtgtcagtgtcgggcaccgatgcgtgtctgacaccggaaca 25863297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 35 - 93
Target Start/End: Original strand, 42469212 - 42469270
Alignment:
Q  35 tgacacgccgacacaaataataatttgagaaaatgatatatttgagtgtaatcataggt 93  Q
    ||||||||||||||  |||||||||||||||||||| |||||| |||||||||||||||    
T  42469212 tgacacgccgacacggataataatttgagaaaatgacatattttagtgtaatcataggt 42469270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 53 - 113
Target Start/End: Complemental strand, 39696049 - 39695989
Alignment:
Q  53 aataatttgagaaaatgatatatttgagtgtaatcataggtatcgtgttggtgtcggacac 113  Q
    |||||||||||||||||||||| || ||||||||||||||| |||||| |||||| |||||    
T  39696049 aataatttgagaaaatgatataatttagtgtaatcataggtgtcgtgtcggtgtccgacac 39695989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 31 - 124
Target Start/End: Complemental strand, 14574121 - 14574029
Alignment:
Q  31 acactgacacgccgacacaaataataatttgagaaaatgatatatttgagtgtaatcataggtatcgtgttggtgtcggacaccgacgagtgtc 124  Q
    |||| ||||||||||||| | |||||||||||  |||||||||| || |||||||| |||||| ||||||  ||||||||| |||||| |||||    
T  14574121 acaccgacacgccgacacgagtaataatttgatgaaatgatataattcagtgtaattataggt-tcgtgtcagtgtcggacgccgacgcgtgtc 14574029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 30 - 145
Target Start/End: Original strand, 21137675 - 21137788
Alignment:
Q  30 gacactgacacgccgacacaaataataatttgagaaaatgatatatttgagtgtaatcataggtatcgtgttggtgtcggacaccgacgagtgtctgaca 129  Q
    ||||||||||||||||||    ||||||| |||||||||||  || || |||| |||||||||| |||||| |  |||||||||| ||| ||||| ||||    
T  21137675 gacactgacacgccgacatcggtaataatctgagaaaatgacgtaattcagtgaaatcataggtgtcgtgtcg--gtcggacaccaacgcgtgtccgaca 21137772  T
Q  130 ccgaaacacacctaat 145  Q
    |||  |||||||||||    
T  21137773 ccgggacacacctaat 21137788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 31 - 100
Target Start/End: Complemental strand, 7997238 - 7997169
Alignment:
Q  31 acactgacacgccgacacaaataataatttgagaaaatgatatatttgagtgtaatcataggtatcgtgt 100  Q
    ||||||||||||| ||||  |||||||||||||||||||||||| |  |||||||| ||| || ||||||    
T  7997238 acactgacacgccaacacggataataatttgagaaaatgatataatacagtgtaattataagtgtcgtgt 7997169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 23 - 68
Target Start/End: Original strand, 31084302 - 31084347
Alignment:
Q  23 cggacacgacactgacacgccgacacaaataataatttgagaaaat 68  Q
    |||||||||||||||||||||||||||  ||||||||||| |||||    
T  31084302 cggacacgacactgacacgccgacacagctaataatttgaaaaaat 31084347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 43 - 100
Target Start/End: Original strand, 31264437 - 31264494
Alignment:
Q  43 cgacacaaataataatttgagaaaatgatatatttgagtgtaatcataggtatcgtgt 100  Q
    |||||||| ||||||||||||||||||| ||| || |||||||||||| || ||||||    
T  31264437 cgacacaagtaataatttgagaaaatgacataattcagtgtaatcataagtgtcgtgt 31264494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 31 - 86
Target Start/End: Complemental strand, 24906373 - 24906318
Alignment:
Q  31 acactgacacgccgacacaaataataatttgagaaaatgatatatttgagtgtaat 86  Q
    ||||||||||||| ||||| |||||||||||| ||||||| ||| || ||||||||    
T  24906373 acactgacacgccaacacagataataatttgaaaaaatgacataattcagtgtaat 24906318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 85
Target Start/End: Complemental strand, 36642835 - 36642780
Alignment:
Q  30 gacactgacacgccgacacaaataataatttgagaaaatgatatatttgagtgtaa 85  Q
    ||||||||||||||||||||  ||||||||||| ||| ||| |||||| |||||||    
T  36642835 gacactgacacgccgacacagttaataatttgaaaaagtgacatattttagtgtaa 36642780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 30 - 68
Target Start/End: Original strand, 9449455 - 9449493
Alignment:
Q  30 gacactgacacgccgacacaaataataatttgagaaaat 68  Q
    ||||||| ||||||||||| |||||||||||||||||||    
T  9449455 gacactggcacgccgacaccaataataatttgagaaaat 9449493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 30 - 88
Target Start/End: Complemental strand, 9878105 - 9878047
Alignment:
Q  30 gacactgacacgccgacacaaataataatttgagaaaatgatatatttgagtgtaatca 88  Q
    |||||||||||| |||||| |||||||||||||||| ||||  || |||| ||||||||    
T  9878105 gacactgacacgtcgacaccaataataatttgagaatatgaattaattgaatgtaatca 9878047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 42 - 90
Target Start/End: Complemental strand, 2577241 - 2577193
Alignment:
Q  42 ccgacacaaataataatttgagaaaatgatatatttgagtgtaatcata 90  Q
    |||||||  |||||||||||||||||||| ||| || ||||||||||||    
T  2577241 ccgacaccgataataatttgagaaaatgacataatttagtgtaatcata 2577193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 30 - 86
Target Start/End: Original strand, 14674255 - 14674311
Alignment:
Q  30 gacactgacacgccgacacaaataataatttgagaaaatgatatatttgagtgtaat 86  Q
    ||||||||||||||||||||  ||||||||||| ||||| | ||| || ||||||||    
T  14674255 gacactgacacgccgacacagctaataatttgaaaaaatcacataatttagtgtaat 14674311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 30 - 90
Target Start/End: Complemental strand, 15410521 - 15410461
Alignment:
Q  30 gacactgacacgccgacacaaataataatttgagaaaatgatatatttgagtgtaatcata 90  Q
    |||||||||||||||||||   ||||||||| ||||||| ||||  || ||||||||||||    
T  15410521 gacactgacacgccgacaccgctaataatttaagaaaattatatgattcagtgtaatcata 15410461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 23 - 107
Target Start/End: Complemental strand, 35252392 - 35252310
Alignment:
Q  23 cggacacgacactgacacgccgacacaaataataatttgagaaaatgatatatttgagtgtaatcataggtatcgtgttggtgtc 107  Q
    |||||| ||||| ||||||||||||| |||||| |||||||||||| | ||| || | |||||||||| || || ||||||||||    
T  35252392 cggacatgacacggacacgccgacaccaataat-atttgagaaaattacatagtt-aatgtaatcatatgtgtcatgttggtgtc 35252310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 30 - 70
Target Start/End: Complemental strand, 41558756 - 41558716
Alignment:
Q  30 gacactgacacgccgacacaaataataatttgagaaaatga 70  Q
    |||||||||||   |||||||||||||||||||||||||||    
T  41558756 gacactgacacattgacacaaataataatttgagaaaatga 41558716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 9e-22; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 36 - 169
Target Start/End: Original strand, 25074781 - 25074914
Alignment:
Q  36 gacacgccgacacaaataataatttgagaaaatgatatatttgagtgtaatcataggtatcgtgttggtgtcggacaccgacgagtgtctgacaccgaaa 135  Q
    |||||||||||||  |||||||||||||||||||| ||| |||||||||||||||||  | |||| |||||| |||||| ||| ||||| ||||| |  |    
T  25074781 gacacgccgacaccgataataatttgagaaaatgacataattgagtgtaatcataggcgttgtgtcggtgtctgacaccaacgcgtgtccgacactggga 25074880  T
Q  136 cacacctaattcgaagagtattcatgtttcatag 169  Q
    |||||||||| ||| |||| ||| || |||||||    
T  25074881 cacacctaatccgaggagtgttcgtgcttcatag 25074914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 30 - 154
Target Start/End: Complemental strand, 25652104 - 25651980
Alignment:
Q  30 gacactgacacgccgacacaaataataatttgagaaaatgatatatttgagtgtaatcataggtatcgtgttggtgtcggacaccgacgagtgtctgaca 129  Q
    |||||| ||||||| ||||  |||||||||||||||||||||||| || |||||| | |||||| | ||||  |||| ||||||||||  ||||  ||||    
T  25652104 gacactaacacgccaacacggataataatttgagaaaatgatataattcagtgtagttataggtgttgtgtcagtgttggacaccgacacgtgttcgaca 25652005  T
Q  130 ccgaaacacacctaattcgaagagt 154  Q
    |||| ||||||||||| ||||||||    
T  25652004 ccgagacacacctaatccgaagagt 25651980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 30 - 117
Target Start/End: Complemental strand, 14223926 - 14223839
Alignment:
Q  30 gacactgacacgccgacacaaataataatttgagaaaatgatatatttgagtgtaatcataggtatcgtgttggtgtcggacaccgac 117  Q
    ||||| |||||||||||||| ||||||||||||||||| |||||| || |||||| ||||| || |||||| |||||| |||||||||    
T  14223926 gacaccgacacgccgacacagataataatttgagaaaacgatataatttagtgtattcataagtgtcgtgtcggtgtccgacaccgac 14223839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 41 - 114
Target Start/End: Original strand, 25892457 - 25892530
Alignment:
Q  41 gccgacacaaataataatttgagaaaatgatatatttgagtgtaatcataggtatcgtgttggtgtcggacacc 114  Q
    ||||| |||||||||||||| ||||||||||||| || ||||||||||||||| ||||||  ||||||||||||    
T  25892457 gccgaaacaaataataatttaagaaaatgatataattcagtgtaatcataggtgtcgtgtcagtgtcggacacc 25892530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 45 - 130
Target Start/End: Original strand, 27903633 - 27903718
Alignment:
Q  45 acacaaataataatttgagaaaatgatatatttgagtgtaatcataggtatcgtgttggtgtcggacaccgacgagtgtctgacac 130  Q
    ||||| ||||||||||||||||| |||||| || | |||||||||| || | |||| ||||||||| ||||||| |||||||||||    
T  27903633 acacagataataatttgagaaaacgatataatttaatgtaatcataagtgttgtgtcggtgtcggataccgacgcgtgtctgacac 27903718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 13 - 110
Target Start/End: Complemental strand, 41319400 - 41319303
Alignment:
Q  13 agcacagactcggacacgacactgacacgccgacacaaataataatttgagaaaatgatatatttgagtgtaatcataggtatcgtgttggtgtcgga 110  Q
    ||||||||||| |||||||||| |||||| |||||| ||||||||||||| ||||||| ||| || | ||||||  || || |||||| |||||||||    
T  41319400 agcacagactcagacacgacacggacacgtcgacaccaataataatttgaaaaaatgacataattcaatgtaattgtatgtgtcgtgtcggtgtcgga 41319303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 36 - 100
Target Start/End: Original strand, 15864825 - 15864889
Alignment:
Q  36 gacacgccgacacaaataataatttgagaaaatgatatatttgagtgtaatcataggtatcgtgt 100  Q
    |||||||||||||  |||||||||||| ||||||||||| || ||||||||||||||| ||||||    
T  15864825 gacacgccgacacggataataatttgaaaaaatgatataatttagtgtaatcataggtgtcgtgt 15864889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 23 - 86
Target Start/End: Original strand, 20503444 - 20503507
Alignment:
Q  23 cggacacgacactgacacgccgacacaaataataatttgagaaaatgatatatttgagtgtaat 86  Q
    ||||||||||||||||||||||||||||  |||||||||| ||||||| ||| || ||||||||    
T  20503444 cggacacgacactgacacgccgacacaacaaataatttgaaaaaatgacataattcagtgtaat 20503507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 45 - 123
Target Start/End: Original strand, 25326427 - 25326505
Alignment:
Q  45 acacaaataataatttgagaaaatgatatatttgagtgtaatcataggtatcgtgttggtgtcggacaccgacgagtgt 123  Q
    ||||| |||||||||| | ||||| ||||| || |||||||| |||| | |||||||||||||||||||||||| ||||    
T  25326427 acacagataataatttaaaaaaataatataatttagtgtaattatagatgtcgtgttggtgtcggacaccgacgcgtgt 25326505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 43 - 100
Target Start/End: Original strand, 34189426 - 34189483
Alignment:
Q  43 cgacacaaataataatttgagaaaatgatatatttgagtgtaatcataggtatcgtgt 100  Q
    ||||||| |||||||||||||||||||| |||||| ||||||||| ||||| ||||||    
T  34189426 cgacacagataataatttgagaaaatgacatatttcagtgtaatcgtaggtgtcgtgt 34189483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 51 - 131
Target Start/End: Complemental strand, 12704709 - 12704629
Alignment:
Q  51 ataataatttgagaaaatgatatatttgagtgtaatcataggtatcgtgttggtgtcggacaccgacgagtgtctgacacc 131  Q
    |||||||||||| ||||||| ||| || | ||||||||||||| |||||| ||||||||||||| |||  |||| ||||||    
T  12704709 ataataatttgaaaaaatgacataattcaatgtaatcataggtgtcgtgtcggtgtcggacaccaacgcatgtccgacacc 12704629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 36 - 114
Target Start/End: Original strand, 8903424 - 8903501
Alignment:
Q  36 gacacgccgacacaaataataatttgagaaaatgatatatttgagtgtaatcataggtatcgtgttggtgtcggacacc 114  Q
    |||||||||||||  |||||| ||||||||||||| |||||| |||||||| |||||| |||||| | || ||||||||    
T  8903424 gacacgccgacacggataatattttgagaaaatgacatattt-agtgtaattataggtgtcgtgtcgatgccggacacc 8903501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 23 - 88
Target Start/End: Original strand, 10954930 - 10954996
Alignment:
Q  23 cggacacga-cactgacacgccgacacaaataataatttgagaaaatgatatatttgagtgtaatca 88  Q
    ||||||||| ||||||||||||||||||| ||||||||||| ||||| | ||| || ||||||||||    
T  10954930 cggacacgaacactgacacgccgacacaactaataatttgaaaaaatcacataattcagtgtaatca 10954996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 100
Target Start/End: Complemental strand, 24205114 - 24205044
Alignment:
Q  30 gacactgacacgccgacacaaataataatttgagaaaatgatatatttgagtgtaatcataggtatcgtgt 100  Q
    |||||||||||||||||||  |||||||||||||||||||| ||| |  |||||||| ||| || ||||||    
T  24205114 gacactgacacgccgacacggataataatttgagaaaatgacataatacagtgtaattataagtgtcgtgt 24205044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 23 - 68
Target Start/End: Original strand, 21479097 - 21479142
Alignment:
Q  23 cggacacgacactgacacgccgacacaaataataatttgagaaaat 68  Q
    |||||||||||||||||||||||||||  ||||||||||| |||||    
T  21479097 cggacacgacactgacacgccgacacagctaataatttgaaaaaat 21479142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 52 - 113
Target Start/End: Complemental strand, 34307831 - 34307770
Alignment:
Q  52 taataatttgagaaaatgatatatttgagtgtaatcataggtatcgtgttggtgtcggacac 113  Q
    ||||||||||||||||| | |||||| |||||||| ||| || |||||| ||||||||||||    
T  34307831 taataatttgagaaaatcacatatttcagtgtaattataagtgtcgtgtcggtgtcggacac 34307770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 23 - 68
Target Start/End: Original strand, 40052311 - 40052356
Alignment:
Q  23 cggacacgacactgacacgccgacacaaataataatttgagaaaat 68  Q
    |||||||||||||||||||||||||||  ||||||||||| |||||    
T  40052311 cggacacgacactgacacgccgacacagctaataatttgaaaaaat 40052356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 23 - 67
Target Start/End: Original strand, 14747540 - 14747584
Alignment:
Q  23 cggacacgacactgacacgccgacacaaataataatttgagaaaa 67  Q
    |||||||||||||||||||||||||||  ||||||||||| ||||    
T  14747540 cggacacgacactgacacgccgacacagctaataatttgaaaaaa 14747584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 85
Target Start/End: Complemental strand, 10335359 - 10335304
Alignment:
Q  30 gacactgacacgccgacacaaataataatttgagaaaatgatatatttgagtgtaa 85  Q
    ||||||||||||||||||||| ||||||||||| ||| | | |||||| |||||||    
T  10335359 gacactgacacgccgacacaactaataatttgaaaaagtcacatattttagtgtaa 10335304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 90
Target Start/End: Original strand, 20691298 - 20691365
Alignment:
Q  23 cggacacgacactgacacgccgacacaaataataatttgagaaaatgatatatttgagtgtaatcata 90  Q
    ||||||| |||||||||||  || ||  |||||||||||||||||||| ||| || ||||||||||||    
T  20691298 cggacacaacactgacacgtagaaactgataataatttgagaaaatgacataattcagtgtaatcata 20691365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 51 - 130
Target Start/End: Original strand, 21211295 - 21211374
Alignment:
Q  51 ataataatttgagaaaatgatatatttgagtgtaatcataggtatcgtgttggtgtcggacaccgacgagtgtctgacac 130  Q
    |||||||||||||||||| | ||| || |||||||| || ||| |||||| |||||  |||||||||| ||||| |||||    
T  21211295 ataataatttgagaaaattacatagttcagtgtaattatgggtgtcgtgtcggtgttcgacaccgacgcgtgtccgacac 21211374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 68
Target Start/End: Original strand, 26290352 - 26290395
Alignment:
Q  25 gacacgacactgacacgccgacacaaataataatttgagaaaat 68  Q
    |||| ||||||||||||||||||| | |||||||||||||||||    
T  26290352 gacaagacactgacacgccgacaccattaataatttgagaaaat 26290395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 22 - 60
Target Start/End: Original strand, 39756214 - 39756252
Alignment:
Q  22 tcggacacgacactgacacgccgacacaaataataattt 60  Q
    |||||||||||||||||||||||||| || |||||||||    
T  39756214 tcggacacgacactgacacgccgacaaaattaataattt 39756252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 51 - 109
Target Start/End: Original strand, 52369782 - 52369840
Alignment:
Q  51 ataataatttgagaaaatgatatatttgagtgtaatcataggtatcgtgttggtgtcgg 109  Q
    |||||||||||||||||| | ||| || | ||||||||||||| |||||| ||||||||    
T  52369782 ataataatttgagaaaattacataattcaatgtaatcataggtgtcgtgtcggtgtcgg 52369840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 98
Target Start/End: Original strand, 1830312 - 1830397
Alignment:
Q  13 agcacagactcggacacgacactgacacgccgacacaaataataatttgagaaaatgatatatttgagtgtaatcataggtatcgt 98  Q
    ||||| ||| |||||| ||||  |||| ||||||||   ||||||||| ||||||||| ||| || ||||||||||||||| ||||    
T  1830312 agcacggacacggacatgacaaggacatgccgacacttttaataatttaagaaaatgacataattcagtgtaatcataggtgtcgt 1830397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 100
Target Start/End: Complemental strand, 3730217 - 3730168
Alignment:
Q  51 ataataatttgagaaaatgatatatttgagtgtaatcataggtatcgtgt 100  Q
    |||||||||||||| ||||| ||| || ||||||||||||||| ||||||    
T  3730217 ataataatttgagataatgacataattcagtgtaatcataggtgtcgtgt 3730168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 30 - 86
Target Start/End: Original strand, 8383243 - 8383299
Alignment:
Q  30 gacactgacacgccgacacaaataataatttgagaaaatgatatatttgagtgtaat 86  Q
    |||| ||||||||||||||   ||||||||||||||||| ||||| || ||||||||    
T  8383243 gacattgacacgccgacaccgctaataatttgagaaaatcatataattcagtgtaat 8383299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 30 - 86
Target Start/End: Complemental strand, 10268559 - 10268503
Alignment:
Q  30 gacactgacacgccgacacaaataataatttgagaaaatgatatatttgagtgtaat 86  Q
    ||||||||||||||||||||  ||||||||||| ||||| | ||| || ||||||||    
T  10268559 gacactgacacgccgacacagttaataatttgaaaaaatcacataatttagtgtaat 10268503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 30 - 86
Target Start/End: Complemental strand, 15796367 - 15796311
Alignment:
Q  30 gacactgacacgccgacacaaataataatttgagaaaatgatatatttgagtgtaat 86  Q
    |||| |||||||||||||||  ||||||||||| ||||| ||||| || ||||||||    
T  15796367 gacaatgacacgccgacacagttaataatttgaaaaaatcatataattcagtgtaat 15796311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 41 - 85
Target Start/End: Complemental strand, 16789712 - 16789668
Alignment:
Q  41 gccgacacaaataataatttgagaaaatgatatatttgagtgtaa 85  Q
    ||||||||| |||||||||||||||||||| ||| || |||||||    
T  16789712 gccgacacagataataatttgagaaaatgacataattcagtgtaa 16789668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 42 - 70
Target Start/End: Original strand, 26665134 - 26665162
Alignment:
Q  42 ccgacacaaataataatttgagaaaatga 70  Q
    |||||||||||||||||||||||||||||    
T  26665134 ccgacacaaataataatttgagaaaatga 26665162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 30 - 113
Target Start/End: Original strand, 29508430 - 29508514
Alignment:
Q  30 gacactgacacgccgacacaaataataatttgagaaaatgatatatttgagtgtaatcataggtatcg-tgttggtgtcggacac 113  Q
    |||| |||||| |||| || | ||||||||||| ||||| ||||| || |||||||| ||| || ||| ||||||||||||||||    
T  29508430 gacattgacacaccgataccactaataatttgaaaaaatcatataattcagtgtaattatatgtgtcgatgttggtgtcggacac 29508514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 30 - 86
Target Start/End: Original strand, 55401061 - 55401117
Alignment:
Q  30 gacactgacacgccgacacaaataataatttgagaaaatgatatatttgagtgtaat 86  Q
    |||||||| |||||||||||| ||||||||||| ||||| | ||| || ||||||||    
T  55401061 gacactgatacgccgacacaactaataatttgaaaaaatcacataatttagtgtaat 55401117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 34)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 30 - 130
Target Start/End: Complemental strand, 17168536 - 17168436
Alignment:
Q  30 gacactgacacgccgacacaaataataatttgagaaaatgatatatttgagtgtaatcataggtatcgtgttggtgtcggacaccgacgagtgtctgaca 129  Q
    |||||||||||||| ||||  |||||||||||||||||||||||| || |||||||| |||||| |||||| |||||||||||| |||  |||||| |||    
T  17168536 gacactgacacgccaacactgataataatttgagaaaatgatataatttagtgtaataataggtgtcgtgtcggtgtcggacactgacacgtgtctaaca 17168437  T
Q  130 c 130  Q
    |    
T  17168436 c 17168436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 30 - 145
Target Start/End: Original strand, 26247412 - 26247526
Alignment:
Q  30 gacactgacacgccgacacaaataataatttgagaaaatgatatatttgagtgtaatcataggtatcgtgttggtgtcggacaccgacgagtgtctgaca 129  Q
    ||||||||||| | || ||  |||||||||| ||||||||| |||||| ||| ||||||||||| |||||| ||||||||||||| ||  ||||||||||    
T  26247412 gacactgacacacagatacggataataatttaagaaaatgacatattttagtataatcataggtttcgtgtcggtgtcggacaccaacacgtgtctgaca 26247511  T
Q  130 ccgaaacacacctaat 145  Q
    ||| ||||||||||||    
T  26247512 ccg-aacacacctaat 26247526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 24 - 145
Target Start/End: Original strand, 34446545 - 34446666
Alignment:
Q  24 ggacacgacactgacacgccgacacaaataataatttgagaaaatgatatatttgagtgtaatcataggtatcgtgttggtgtcggacaccgacgagtgt 123  Q
    ||||| ||||| ||||| | |||||  |||||||||||||||||||| ||| || ||||||||||||||| |||||| ||||||  ||||||||| || |    
T  34446545 ggacatgacacagacactctgacacggataataatttgagaaaatgacataattcagtgtaatcataggtgtcgtgtcggtgtccaacaccgacgcgtat 34446644  T
Q  124 ctgacaccgaaacacacctaat 145  Q
    ||||||| |  |||||||||||    
T  34446645 ctgacactgggacacacctaat 34446666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 30 - 106
Target Start/End: Original strand, 6389729 - 6389805
Alignment:
Q  30 gacactgacacgccgacacaaataataatttgagaaaatgatatatttgagtgtaatcataggtatcgtgttggtgt 106  Q
    |||||| ||||||||||||  |||||||||||||||||||||||| || ||||||||||||||| |||||| |||||    
T  6389729 gacactcacacgccgacacggataataatttgagaaaatgatataatttagtgtaatcataggtgtcgtgtcggtgt 6389805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 23 - 107
Target Start/End: Complemental strand, 19602261 - 19602177
Alignment:
Q  23 cggacacgacactgacacgccgacacaaataataatttgagaaaatgatatatttgagtgtaatcataggtatcgtgttggtgtc 107  Q
    ||||||| |||| ||||| || ||||  |||||||||||||||||||||||| || ||||||||||||||||| |||| ||||||    
T  19602261 cggacacaacacggacacaccaacactgataataatttgagaaaatgatataattcagtgtaatcataggtattgtgtcggtgtc 19602177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 30 - 106
Target Start/End: Complemental strand, 2153960 - 2153884
Alignment:
Q  30 gacactgacacgccgacacaaataataatttgagaaaatgatatatttgagtgtaatcataggtatcgtgttggtgt 106  Q
    ||||| ||||||||||||| || |||||||| ||||||||||||| || |||||||| |||||| ||| ||||||||    
T  2153960 gacaccgacacgccgacacgaacaataatttaagaaaatgatataatttagtgtaattataggtgtcgcgttggtgt 2153884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 25 - 70
Target Start/End: Original strand, 4937573 - 4937618
Alignment:
Q  25 gacacgacactgacacgccgacacaaataataatttgagaaaatga 70  Q
    ||||||||||| ||||||||||||||||||||||||||| ||||||    
T  4937573 gacacgacactcacacgccgacacaaataataatttgagcaaatga 4937618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 25 - 70
Target Start/End: Original strand, 4953282 - 4953327
Alignment:
Q  25 gacacgacactgacacgccgacacaaataataatttgagaaaatga 70  Q
    ||||||||||| ||||||||||||||||||||||||||| ||||||    
T  4953282 gacacgacactcacacgccgacacaaataataatttgagcaaatga 4953327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 42 - 100
Target Start/End: Complemental strand, 13689254 - 13689196
Alignment:
Q  42 ccgacacaaataataatttgagaaaatgatatatttgagtgtaatcataggtatcgtgt 100  Q
    |||||||| |||||||||||||||||| | | |||| | ||||||||||||||||||||    
T  13689254 ccgacacagataataatttgagaaaataacaaatttcaatgtaatcataggtatcgtgt 13689196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 23 - 68
Target Start/End: Complemental strand, 12868755 - 12868710
Alignment:
Q  23 cggacacgacactgacacgccgacacaaataataatttgagaaaat 68  Q
    |||||||||||||||||||||||||||  ||||||||||| |||||    
T  12868755 cggacacgacactgacacgccgacacagttaataatttgaaaaaat 12868710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 30 - 86
Target Start/End: Complemental strand, 5732583 - 5732527
Alignment:
Q  30 gacactgacacgccgacacaaataataatttgagaaaatgatatatttgagtgtaat 86  Q
    |||||||||||||||||||   ||||||||||||||||| | |||||| ||||||||    
T  5732583 gacactgacacgccgacaccgttaataatttgagaaaatcacatattttagtgtaat 5732527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 30 - 86
Target Start/End: Original strand, 7938102 - 7938158
Alignment:
Q  30 gacactgacacgccgacacaaataataatttgagaaaatgatatatttgagtgtaat 86  Q
    ||||||||||||||||||||  ||||||||||| ||||| ||||| || ||||||||    
T  7938102 gacactgacacgccgacacagctaataatttgaaaaaatcatataatttagtgtaat 7938158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 30 - 86
Target Start/End: Original strand, 16833294 - 16833350
Alignment:
Q  30 gacactgacacgccgacacaaataataatttgagaaaatgatatatttgagtgtaat 86  Q
    ||||||||||||||||||||| ||||||||||| ||||| | ||| || ||||||||    
T  16833294 gacactgacacgccgacacaactaataatttgaaaaaatcacatacttcagtgtaat 16833350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 97
Target Start/End: Original strand, 3398605 - 3398671
Alignment:
Q  30 gacactgacacgccgacacaaataataatttgagaaaatgatatatttgagtgtaatcataggtatcg 97  Q
    ||||||||||||||||||||  ||||||||||| ||||| ||||| || |||||||| ||| ||||||    
T  3398605 gacactgacacgccgacacagctaataatttga-aaaatcatataattcagtgtaattataagtatcg 3398671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 97
Target Start/End: Original strand, 7625108 - 7625175
Alignment:
Q  30 gacactgacacgccgacacaaataataatttgagaaaatgatatatttgagtgtaatcataggtatcg 97  Q
    ||||| |||||| ||||||  |||||||||||||||||||||||| || ||| |||| ||||| ||||    
T  7625108 gacaccgacacgtcgacacggataataatttgagaaaatgatataatttagtataattataggaatcg 7625175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 31 - 90
Target Start/End: Complemental strand, 9024248 - 9024189
Alignment:
Q  31 acactgacacgccgacacaaataataatttgagaaaatgatatatttgagtgtaatcata 90  Q
    |||| |||||| |||||||||| ||||||||||||||||| ||| || | ||||||||||    
T  9024248 acacggacacgtcgacacaaatgataatttgagaaaatgacataattcaatgtaatcata 9024189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 57 - 131
Target Start/End: Complemental strand, 4420225 - 4420156
Alignment:
Q  57 atttgagaaaatgatatatttgagtgtaatcataggtatcgtgttggtgtcggacaccgacgagtgtctgacacc 131  Q
    |||||||||||||||||| || ||||||| |||||     ||||||||||| |||||| ||| ||||||||||||    
T  4420225 atttgagaaaatgatataattcagtgtaaccatag-----gtgttggtgtcagacaccaacgtgtgtctgacacc 4420156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 37 - 99
Target Start/End: Original strand, 6299505 - 6299567
Alignment:
Q  37 acacgccgacacaaataataatttgagaaaatgatatatttgagtgtaatcataggtatcgtg 99  Q
    |||||||||||   |||||||||||||||||||||||| || | |||||| |||||| |||||    
T  6299505 acacgccgacatggataataatttgagaaaatgatataattcaatgtaatgataggtgtcgtg 6299567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 37 - 99
Target Start/End: Original strand, 6306315 - 6306377
Alignment:
Q  37 acacgccgacacaaataataatttgagaaaatgatatatttgagtgtaatcataggtatcgtg 99  Q
    |||||||||||   |||||||||||||||||||||||| || | |||||| |||||| |||||    
T  6306315 acacgccgacatggataataatttgagaaaatgatataattcaatgtaatgataggtgtcgtg 6306377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 30 - 68
Target Start/End: Complemental strand, 8777046 - 8777008
Alignment:
Q  30 gacactgacacgccgacacaaataataatttgagaaaat 68  Q
    ||||||||||||||||||||| ||||||||||| |||||    
T  8777046 gacactgacacgccgacacaactaataatttgaaaaaat 8777008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 30 - 76
Target Start/End: Complemental strand, 10760914 - 10760868
Alignment:
Q  30 gacactgacacgccgacacaaataataatttgagaaaatgatatatt 76  Q
    |||||||||||| ||||||  |||||||||||||||||||| |||||    
T  10760914 gacactgacacgtcgacactgataataatttgagaaaatgacatatt 10760868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 68
Target Start/End: Complemental strand, 5626776 - 5626731
Alignment:
Q  23 cggacacgacactgacacgccgacacaaataataatttgagaaaat 68  Q
    |||||||||||||||||||||||||||| ||||  ||| |||||||    
T  5626776 cggacacgacactgacacgccgacacaactaatttttttagaaaat 5626731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 100
Target Start/End: Complemental strand, 12235571 - 12235522
Alignment:
Q  51 ataataatttgagaaaatgatatatttgagtgtaatcataggtatcgtgt 100  Q
    ||||||||| |||||||||| ||| || ||||||||||||||| ||||||    
T  12235571 ataataattagagaaaatgacataattcagtgtaatcataggtgtcgtgt 12235522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 84
Target Start/End: Complemental strand, 17422327 - 17422274
Alignment:
Q  31 acactgacacgccgacacaaataataatttgagaaaatgatatatttgagtgta 84  Q
    ||||| ||||| ||||||  |||||||||||||||||||||||| |||| ||||    
T  17422327 acactaacacgtcgacaccgataataatttgagaaaatgatataattgaatgta 17422274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 30 - 74
Target Start/End: Original strand, 677823 - 677867
Alignment:
Q  30 gacactgacacgccgacacaaataataatttgagaaaatgatata 74  Q
    |||||||||||||||||||   ||||||||||||||||| |||||    
T  677823 gacactgacacgccgacactgttaataatttgagaaaatcatata 677867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 30 - 86
Target Start/End: Complemental strand, 7996451 - 7996395
Alignment:
Q  30 gacactgacacgccgacacaaataataatttgagaaaatgatatatttgagtgtaat 86  Q
    |||||||||| ||||||||   ||||||||||||||||| ||||| || ||||||||    
T  7996451 gacactgacatgccgacactgctaataatttgagaaaatcatataattcagtgtaat 7996395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 30 - 86
Target Start/End: Original strand, 8022350 - 8022406
Alignment:
Q  30 gacactgacacgccgacacaaataataatttgagaaaatgatatatttgagtgtaat 86  Q
    |||||||||| ||||||||   ||||||||||||||||| ||||| || ||||||||    
T  8022350 gacactgacatgccgacactgctaataatttgagaaaatcatataattcagtgtaat 8022406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 30 - 62
Target Start/End: Complemental strand, 8365592 - 8365560
Alignment:
Q  30 gacactgacacgccgacacaaataataatttga 62  Q
    ||||||||||||||||||||| |||||||||||    
T  8365592 gacactgacacgccgacacaactaataatttga 8365560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 30 - 86
Target Start/End: Complemental strand, 10770747 - 10770691
Alignment:
Q  30 gacactgacacgccgacacaaataataatttgagaaaatgatatatttgagtgtaat 86  Q
    |||||||||||||| |||||| ||||||||||| ||||| | ||| || ||||||||    
T  10770747 gacactgacacgccaacacaactaataatttgaaaaaatcacataattcagtgtaat 10770691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 30 - 86
Target Start/End: Original strand, 12696310 - 12696366
Alignment:
Q  30 gacactgacacgccgacacaaataataatttgagaaaatgatatatttgagtgtaat 86  Q
    ||||||||||||||||||||  ||||||||||| ||||| | ||| || ||||||||    
T  12696310 gacactgacacgccgacacagctaataatttgaaaaaattacataattcagtgtaat 12696366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 30 - 86
Target Start/End: Original strand, 16766683 - 16766739
Alignment:
Q  30 gacactgacacgccgacacaaataataatttgagaaaatgatatatttgagtgtaat 86  Q
    ||||||||||||||||||||  ||||||||||| ||||| | ||| || ||||||||    
T  16766683 gacactgacacgccgacacagctaataatttgaaaaaatcacataattcagtgtaat 16766739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 30 - 86
Target Start/End: Complemental strand, 17841662 - 17841606
Alignment:
Q  30 gacactgacacgccgacacaaataataatttgagaaaatgatatatttgagtgtaat 86  Q
    ||||||||||||||||||||  ||||||||||| ||||| | ||| || ||||||||    
T  17841662 gacactgacacgccgacacagctaataatttgaaaaaatcacataatttagtgtaat 17841606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 32 - 68
Target Start/End: Original strand, 32313392 - 32313428
Alignment:
Q  32 cactgacacgccgacacaaataataatttgagaaaat 68  Q
    ||||||||||||||||| |||||||| ||||||||||    
T  32313392 cactgacacgccgacaccaataataagttgagaaaat 32313428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 30 - 86
Target Start/End: Original strand, 34595120 - 34595176
Alignment:
Q  30 gacactgacacgccgacacaaataataatttgagaaaatgatatatttgagtgtaat 86  Q
    |||| |||||||||||||||| ||||||||||| ||||| | ||| || ||||||||    
T  34595120 gacaatgacacgccgacacaactaataatttgaaaaaatcacataattcagtgtaat 34595176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 51 - 154
Target Start/End: Complemental strand, 42004999 - 42004897
Alignment:
Q  51 ataataatttgagaaaatgatatatttgagtgtaatcataggtatcgtgttggtgtcggacaccgacgagtgtctgacaccgaaacacacctaattcgaa 150  Q
    |||||||||||||||||||| ||| || ||||||||||||||| | |||| |||||||||||||||||  |||| |||| | |||||| |||||||||||    
T  42004999 ataataatttgagaaaatgacataatttagtgtaatcataggtgttgtgtcggtgtcggacaccgacgcatgtccgaca-ctaaacacgcctaattcgaa 42004901  T
Q  151 gagt 154  Q
    ||||    
T  42004900 gagt 42004897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 51 - 118
Target Start/End: Complemental strand, 6936452 - 6936385
Alignment:
Q  51 ataataatttgagaaaatgatatatttgagtgtaatcataggtatcgtgttggtgtcggacaccgacg 118  Q
    |||||||| ||||||||||| ||| || ||||||||||||||| ||||||  ||||||||||||||||    
T  6936452 ataataatctgagaaaatgacataattaagtgtaatcataggtgtcgtgtctgtgtcggacaccgacg 6936385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 23 - 86
Target Start/End: Complemental strand, 22881696 - 22881633
Alignment:
Q  23 cggacacgacactgacacgccgacacaaataataatttgagaaaatgatatatttgagtgtaat 86  Q
    |||||||||||||||||||||||||||| ||||||||||| ||||| | ||| || ||||||||    
T  22881696 cggacacgacactgacacgccgacacaactaataatttgaaaaaatcacataatttagtgtaat 22881633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 52 - 170
Target Start/End: Complemental strand, 20157401 - 20157283
Alignment:
Q  52 taataatttgagaaaatgatatatttgagtgtaatcataggtatcgtgttggtgtcggacaccgacgagtgtctgacaccgaaacacacctaattcgaag 151  Q
    ||||||| ||||||||| | ||| || |||||||||||| || |||   | ||||| |||||||||| ||||| |||||||| |||||||||||| || |    
T  20157401 taataatgtgagaaaatcacataattcagtgtaatcatatgtgtcggtgtcgtgtccgacaccgacgcgtgtccgacaccgagacacacctaatttgagg 20157302  T
Q  152 agtattcatgtttcatagg 170  Q
    ||||| | || ||||||||    
T  20157301 agtatccgtgcttcatagg 20157283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 42 - 116
Target Start/End: Complemental strand, 40747834 - 40747760
Alignment:
Q  42 ccgacacaaataataatttgagaaaatgatatatttgagtgtaatcataggtatcgtgttggtgtcggacaccga 116  Q
    |||||||  |||||||||||||||||||| ||| || | |||||| |||||| || |||||||||||||||||||    
T  40747834 ccgacacggataataatttgagaaaatgacataattcaatgtaattataggtgtcatgttggtgtcggacaccga 40747760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 23 - 145
Target Start/End: Complemental strand, 17831611 - 17831486
Alignment:
Q  23 cggacacgacactgacacgccgacacaaataataatttgagaaaatgatatatttgagtgtaatcataggt---atcgtgttggtgtcggacaccgacga 119  Q
    |||| |||||||||||||||||||||   ||||||||||||||||| | ||  || |||||||||||| ||    ||||||  |||||||||||||||      
T  17831611 cggatacgacactgacacgccgacaccgctaataatttgagaaaatcacattattcagtgtaatcatatgtgtcgtcgtgtcagtgtcggacaccgacat 17831512  T
Q  120 gtgtctgacaccgaaacacacctaat 145  Q
    ||||| |||||||  |||| ||||||    
T  17831511 gtgtccgacaccgggacacgcctaat 17831486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 3490470 - 3490426
Alignment:
Q  23 cggacacgacactgacacgccgacacaaataataatttgagaaaa 67  Q
    ||||||||||||||||||||||||||   ||||||||||||||||    
T  3490470 cggacacgacactgacacgccgacactgctaataatttgagaaaa 3490426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 23 - 67
Target Start/End: Original strand, 6427440 - 6427484
Alignment:
Q  23 cggacacgacactgacacgccgacacaaataataatttgagaaaa 67  Q
    ||||||||||||||||| |||||||||| ||||||||||| ||||    
T  6427440 cggacacgacactgacatgccgacacaactaataatttgaaaaaa 6427484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 30 - 86
Target Start/End: Complemental strand, 46348456 - 46348400
Alignment:
Q  30 gacactgacacgccgacacaaataataatttgagaaaatgatatatttgagtgtaat 86  Q
    ||||||||||||||||||||  ||||||||||| ||||| ||||| || ||||||||    
T  46348456 gacactgacacgccgacacagctaataatttgaaaaaatcatataatttagtgtaat 46348400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 93
Target Start/End: Original strand, 36878447 - 36878510
Alignment:
Q  30 gacactgacacgccgacacaaataataatttgagaaaatgatatatttgagtgtaatcataggt 93  Q
    |||||||||||||||||||   ||||||||||||||||| | ||| || |||||||| ||||||    
T  36878447 gacactgacacgccgacaccgctaataatttgagaaaatcacataattcagtgtaattataggt 36878510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 30 - 68
Target Start/End: Original strand, 37598818 - 37598856
Alignment:
Q  30 gacactgacacgccgacacaaataataatttgagaaaat 68  Q
    ||||||||||||||||||||| ||||||||||| |||||    
T  37598818 gacactgacacgccgacacaactaataatttgaaaaaat 37598856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 25 - 98
Target Start/End: Complemental strand, 39101258 - 39101187
Alignment:
Q  25 gacacgacactgacacgccgacacaaataataatttgagaaaatgatatatttgagtgtaatcataggtatcgt 98  Q
    |||||||||| |||||  ||||||| |||||||||||||||||| | ||| || |||||||| |||||| ||||    
T  39101258 gacacgacacagacac--cgacacatataataatttgagaaaataacataattaagtgtaattataggtgtcgt 39101187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 68
Target Start/End: Complemental strand, 609530 - 609493
Alignment:
Q  31 acactgacacgccgacacaaataataatttgagaaaat 68  Q
    |||||||||||||||||| | |||||||||||||||||    
T  609530 acactgacacgccgacaccactaataatttgagaaaat 609493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 68
Target Start/End: Complemental strand, 10572661 - 10572624
Alignment:
Q  31 acactgacacgccgacacaaataataatttgagaaaat 68  Q
    |||||||||||||||||| | |||||||||||||||||    
T  10572661 acactgacacgccgacaccactaataatttgagaaaat 10572624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 96
Target Start/End: Complemental strand, 45660829 - 45660776
Alignment:
Q  43 cgacacaaataataatttgagaaaatgatatatttgagtgtaatcataggtatc 96  Q
    |||||| |||||||||||||||| |||  ||| |||| ||||||||||||||||    
T  45660829 cgacaccaataataatttgagaatatgtcataattgaatgtaatcataggtatc 45660776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 30 - 86
Target Start/End: Original strand, 1815243 - 1815299
Alignment:
Q  30 gacactgacacgccgacacaaataataatttgagaaaatgatatatttgagtgtaat 86  Q
    |||||||||||||||||||||||||| |||| | ||||| | ||| || ||||||||    
T  1815243 gacactgacacgccgacacaaataattattttaaaaaatcacataattcagtgtaat 1815299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 26 - 86
Target Start/End: Complemental strand, 24577263 - 24577203
Alignment:
Q  26 acacgacactgacacgccgacacaaataataatttgagaaaatgatatatttgagtgtaat 86  Q
    ||||||||| ||||||| ||||||| ||||||||||| ||||| | ||| || ||||||||    
T  24577263 acacgacacggacacgctgacacaactaataatttgaaaaaatcacataattcagtgtaat 24577203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 30 - 86
Target Start/End: Original strand, 38503306 - 38503362
Alignment:
Q  30 gacactgacacgccgacacaaataataatttgagaaaatgatatatttgagtgtaat 86  Q
    |||||| |||| |||||||   ||||||||||||||||| |||||||| ||||||||    
T  38503306 gacactaacacaccgacaccgctaataatttgagaaaatcatatatttcagtgtaat 38503362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 30 - 62
Target Start/End: Complemental strand, 48040535 - 48040503
Alignment:
Q  30 gacactgacacgccgacacaaataataatttga 62  Q
    |||||||||||||||||||| ||||||||||||    
T  48040535 gacactgacacgccgacacagataataatttga 48040503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 8e-19; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 36 - 132
Target Start/End: Original strand, 24343499 - 24343595
Alignment:
Q  36 gacacgccgacacaaataataatttgagaaaatgatatatttgagtgtaatcataggtatcgtgttggtgtcggacaccgacgagtgtctgacaccg 132  Q
    |||||||||||||  |||||||||||||||||| | ||| || |||||||| |||||| |||||| |||||| |||||||||| ||||| |||||||    
T  24343499 gacacgccgacacggataataatttgagaaaattacataattcagtgtaattataggtgtcgtgtcggtgtccgacaccgacgcgtgtccgacaccg 24343595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 31 - 154
Target Start/End: Complemental strand, 20743350 - 20743221
Alignment:
Q  31 acactgacacgccgacacaaataataatttgagaaaatgatatatttgagtgtaatcataggtatcgtgttggtgtcg------gacaccgacgagtgtc 124  Q
    ||||||||||||||||||  |||||||||||||||||||| ||| || ||||||||||||||| | |||| |||||||      |||||||||  |||||    
T  20743350 acactgacacgccgacacggataataatttgagaaaatgacataattcagtgtaatcataggtgttgtgtcggtgtcgatgtcagacaccgacacgtgtc 20743251  T
Q  125 tgacaccgaaacacacctaattcgaagagt 154  Q
     ||||||| |||||| ||||| ||| ||||    
T  20743250 cgacaccggaacacatctaatccgatgagt 20743221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 51 - 145
Target Start/End: Complemental strand, 3144704 - 3144611
Alignment:
Q  51 ataataatttgagaaaatgatatatttgagtgtaatcataggtatcgtgttggtgtcggacaccgacgagtgtctgacaccgaaacacacctaat 145  Q
    |||||||||| ||||||||||||| || ||||||||||||||| |||||| |||||| |||||| ||| |||||  ||| ||| |||||||||||    
T  3144704 ataataatttcagaaaatgatataatttagtgtaatcataggtgtcgtgtcggtgtcagacaccaacgcgtgtccaaca-cgagacacacctaat 3144611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 30 - 132
Target Start/End: Original strand, 7012052 - 7012160
Alignment:
Q  30 gacactgacacgccgacacaaataataatttgagaaaatgatatatttgagtgtaatcataggtatc------gtgttggtgtcggacaccgacgagtgt 123  Q
    ||||| |||||||||||||  |||||||||||||||||||| ||| || ||||| ||||||||||||      |||| ||||||||||||||||| || |    
T  7012052 gacaccgacacgccgacaccgataataatttgagaaaatgacataattcagtgtgatcataggtatcggtgttgtgtcggtgtcggacaccgacgcgtat 7012151  T
Q  124 ctgacaccg 132  Q
    | |||||||    
T  7012152 ccgacaccg 7012160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 25 - 145
Target Start/End: Complemental strand, 31243626 - 31243500
Alignment:
Q  25 gacacgacactgacacgccgacacaaataataatttgagaaaatgatatatttgagtgtaatcataggtatc------gtgttggtgtcggacaccgacg 118  Q
    |||||||||| | |||  ||||||  |||||||||||||||||||| ||| || ||||||||||||||| ||      |||||||||||||||||||| |    
T  31243626 gacacgacacaggcacatcgacacttataataatttgagaaaatgacataattcagtgtaatcataggtgtcatgtcggtgttggtgtcggacaccgatg 31243527  T
Q  119 agtgtctgacaccgaaacacacctaat 145  Q
     ||||  ||||||   |||||||||||    
T  31243526 cgtgttcgacaccaggacacacctaat 31243500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 37 - 172
Target Start/End: Complemental strand, 53381658 - 53381527
Alignment:
Q  37 acacgccgacacaaataataatttgagaaaatgatatatttgagtgtaatcataggtatcgtgttggtgtcggacaccgacgagtgtctgacaccgaaac 136  Q
    ||||||||||||  |||||||||| |||||||||     || |||||||| |||||  |||||| |||||||||||| |||| || || |||||||  ||    
T  53381658 acacgccgacaccgataataatttaagaaaatgaa----ttcagtgtaattataggcgtcgtgtcggtgtcggacactgacgcgtatccgacaccgggac 53381563  T
Q  137 acacctaattcgaagagtattcatgtttcataggtt 172  Q
    ||||||||| ||| |||| | | || ||||||||||    
T  53381562 acacctaatccgaggagtgtccgtgcttcataggtt 53381527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 36 - 109
Target Start/End: Original strand, 6273936 - 6274009
Alignment:
Q  36 gacacgccgacacaaataataatttgagaaaatgatatatttgagtgtaatcataggtatcgtgttggtgtcgg 109  Q
    ||||||| |||||| | |||||||||||||||||||||| || |||||||| ||||   |||||| ||||||||    
T  6273936 gacacgctgacacagacaataatttgagaaaatgatataatttagtgtaattatagtcgtcgtgtcggtgtcgg 6274009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 51 - 131
Target Start/End: Complemental strand, 18513293 - 18513213
Alignment:
Q  51 ataataatttgagaaaatgatatatttgagtgtaatcataggtatc-gtgttggtgtcggacaccgacgagtgtctgacacc 131  Q
    |||||||||||||||||||| ||| || | |||||||||| || || ||||| |||||||||||||||| ||||| ||||||    
T  18513293 ataataatttgagaaaatgacataattcaatgtaatcatatgtgtcagtgtt-gtgtcggacaccgacgtgtgtccgacacc 18513213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 26 - 114
Target Start/End: Original strand, 23386127 - 23386216
Alignment:
Q  26 acacgacactgacacgccgacacaaataataatttgagaaaa-tgatatatttgagtgtaatcataggtatcgtgttggtgtcggacacc 114  Q
    ||||||||||||| |||||| ||  || ||||||| | |||| ||||||| || ||||||||||||||| || ||| |||||||||||||    
T  23386127 acacgacactgactcgccgatacggatgataatttaaaaaaaatgatataatttagtgtaatcataggtgtcatgtcggtgtcggacacc 23386216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 30 - 86
Target Start/End: Complemental strand, 16303339 - 16303283
Alignment:
Q  30 gacactgacacgccgacacaaataataatttgagaaaatgatatatttgagtgtaat 86  Q
    |||||||||||||||||| | |||||| ||||| ||||||||||| || ||||||||    
T  16303339 gacactgacacgccgacaaagataatattttgaaaaaatgatataatttagtgtaat 16303283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 53 - 93
Target Start/End: Complemental strand, 49659573 - 49659533
Alignment:
Q  53 aataatttgagaaaatgatatatttgagtgtaatcataggt 93  Q
    |||||||||||||||||||||| || |||||||||||||||    
T  49659573 aataatttgagaaaatgatataatttagtgtaatcataggt 49659533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 68
Target Start/End: Complemental strand, 12895342 - 12895309
Alignment:
Q  35 tgacacgccgacacaaataataatttgagaaaat 68  Q
    |||||||||||||||||||||||||||| |||||    
T  12895342 tgacacgccgacacaaataataatttgaaaaaat 12895309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 118
Target Start/End: Complemental strand, 20521922 - 20521836
Alignment:
Q  30 gacactgacacgccgacacaaataataatttgagaaaatgatatatttgagtgtaatcataggtatcgtgttggtgtcggacaccgacg 118  Q
    |||||||||||||||| ||  |||||||||||| ||||| | ||| || | || ||||||  || |||||| |||||||||||||||||    
T  20521922 gacactgacacgccgataccgataataatttgataaaatcacataattcaatgaaatcat--gtgtcgtgtcggtgtcggacaccgacg 20521836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 30 - 62
Target Start/End: Original strand, 19482654 - 19482686
Alignment:
Q  30 gacactgacacgccgacacaaataataatttga 62  Q
    ||||||||||||||||||||| |||||||||||    
T  19482654 gacactgacacgccgacacaactaataatttga 19482686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 30 - 86
Target Start/End: Original strand, 21945489 - 21945545
Alignment:
Q  30 gacactgacacgccgacacaaataataatttgagaaaatgatatatttgagtgtaat 86  Q
    |||||||||| |||||||||  ||||||||||| ||||||| ||| || ||||||||    
T  21945489 gacactgacatgccgacacagctaataatttgaaaaaatgacataattcagtgtaat 21945545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 30 - 86
Target Start/End: Original strand, 36635310 - 36635366
Alignment:
Q  30 gacactgacacgccgacacaaataataatttgagaaaatgatatatttgagtgtaat 86  Q
    |||||||||||||| |||| | ||||||||||||||||| | ||| || ||||||||    
T  36635310 gacactgacacgccaacaccactaataatttgagaaaatcacataattcagtgtaat 36635366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 45 - 93
Target Start/End: Complemental strand, 50848361 - 50848313
Alignment:
Q  45 acacaaataataatttgagaaaatgatatatttgagtgtaatcataggt 93  Q
    |||| ||||||||||||| ||||||||||| || ||||||||| |||||    
T  50848361 acaccaataataatttgaaaaaatgatataattcagtgtaatcgtaggt 50848313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 5e-17; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 36 - 145
Target Start/End: Complemental strand, 14513241 - 14513132
Alignment:
Q  36 gacacgccgacacaaataataatttgagaaaatgatatatttgagtgtaatcataggtatcgtgttggtgtcggacaccgacgagtgtctgacaccgaaa 135  Q
    |||||||| ||| |||||||||||||||||||| | ||| || || |||||||||| | | |||| |||||| ||||||||||  |||| ||||||| ||    
T  14513241 gacacgccaacaaaaataataatttgagaaaattacataattcagcgtaatcatagatttggtgtcggtgtcagacaccgacgcatgtccgacaccggaa 14513142  T
Q  136 cacacctaat 145  Q
    ||||||||||    
T  14513141 cacacctaat 14513132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 42 - 109
Target Start/End: Original strand, 13845232 - 13845299
Alignment:
Q  42 ccgacacaaataataatttgagaaaatgatatatttgagtgtaatcataggtatcgtgttggtgtcgg 109  Q
    ||||||||||||||||||||||||||||||||| || || |||||||||||| ||||||  |||||||    
T  13845232 ccgacacaaataataatttgagaaaatgatataatttagagtaatcataggtgtcgtgtctgtgtcgg 13845299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 30 - 113
Target Start/End: Original strand, 3658133 - 3658216
Alignment:
Q  30 gacactgacacgccgacacaaataataatttgagaaaatgatatatttgagtgtaatcataggtatcgtgttggtgtcggacac 113  Q
    ||||| |||||  ||||||  |||||||||||||||||| || || || ||||||||||||||| |||||||| ||||||||||    
T  3658133 gacaccgacacatcgacacggataataatttgagaaaataatgtagttcagtgtaatcataggtgtcgtgttgatgtcggacac 3658216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 29 - 108
Target Start/End: Original strand, 44067501 - 44067580
Alignment:
Q  29 cgacactgacacgccgacacaaataataatttgagaaaatgatatatttgagtgtaatcataggtatcgtgttggtgtcg 108  Q
    ||||||||||||||||||||  |||||||||||||||||||| ||| |  |||||||| ||| || |||||| |||||||    
T  44067501 cgacactgacacgccgacacggataataatttgagaaaatgacataatacagtgtaattataagtgtcgtgtcggtgtcg 44067580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 30 - 100
Target Start/End: Original strand, 39820415 - 39820485
Alignment:
Q  30 gacactgacacgccgacacaaataataatttgagaaaatgatatatttgagtgtaatcataggtatcgtgt 100  Q
    ||||| ||||||| ||| |  |||||||||||||||||||||||| || ||||||||||||||| ||||||    
T  39820415 gacaccgacacgctgacccgtataataatttgagaaaatgatataatttagtgtaatcataggtgtcgtgt 39820485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 51 - 100
Target Start/End: Complemental strand, 35431192 - 35431143
Alignment:
Q  51 ataataatttgagaaaatgatatatttgagtgtaatcataggtatcgtgt 100  Q
    |||||||||||||||||||| |||||| ||||||||||||||| ||||||    
T  35431192 ataataatttgagaaaatgacatattttagtgtaatcataggtgtcgtgt 35431143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 25 - 85
Target Start/End: Original strand, 11815810 - 11815870
Alignment:
Q  25 gacacgacactgacacgccgacacaaataataatttgagaaaatgatatatttgagtgtaa 85  Q
    |||||||||||||||||  ||||| |||||||||||||||||||| |||| |||| |||||    
T  11815810 gacacgacactgacacgttgacaccaataataatttgagaaaatgttataattgaatgtaa 11815870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 107
Target Start/End: Original strand, 40063933 - 40064014
Alignment:
Q  24 ggacacgacactgacacgccgacacaaataataatttgagaaaatgatatatttgagtgtaatcataggtatcgtgttggtgtc 107  Q
    ||||||||||| |||||  |||||| ||||||||||||||||||||| ||| || | ||||||||||||  |||||| ||||||    
T  40063933 ggacacgacacggacac--cgacaccaataataatttgagaaaatgacataattcattgtaatcataggcgtcgtgtcggtgtc 40064014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 30 - 93
Target Start/End: Complemental strand, 28883951 - 28883888
Alignment:
Q  30 gacactgacacgccgacacaaataataatttgagaaaatgatatatttgagtgtaatcataggt 93  Q
    |||||||||| |||| ||| ||||||||||||||||||||| ||| || |||| ||||||||||    
T  28883951 gacactgacatgccgccacgaataataatttgagaaaatgacataattcagtggaatcataggt 28883888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 113
Target Start/End: Complemental strand, 15816202 - 15816113
Alignment:
Q  30 gacactgacacgccgacacaaataataatttgagaaaatgatatatttgagtgtaatcata------ggtatcgtgttggtgtcggacac 113  Q
    ||||||||||||||||||||| ||||||||||| ||||| | ||| || |||||||| |||      ||| |||||||||||||||||||    
T  15816202 gacactgacacgccgacacaactaataatttgaaaaaatcacataatttagtgtaattataagtgtcggtgtcgtgttggtgtcggacac 15816113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 51 - 100
Target Start/End: Original strand, 1676719 - 1676768
Alignment:
Q  51 ataataatttgagaaaatgatatatttgagtgtaatcataggtatcgtgt 100  Q
    ||||||||||| |||||||| |||||| ||||||||||||||| ||||||    
T  1676719 ataataatttgtgaaaatgacatattttagtgtaatcataggtgtcgtgt 1676768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 25 - 86
Target Start/End: Complemental strand, 13844674 - 13844613
Alignment:
Q  25 gacacgacactgacacgccgacacaaataataatttgagaaaatgatatatttgagtgtaat 86  Q
    |||||||||| |||||||||||||   ||||||||||||||||| | ||| |||||||||||    
T  13844674 gacacgacacggacacgccgacactgctaataatttgagaaaatcacataattgagtgtaat 13844613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 30 - 86
Target Start/End: Complemental strand, 4673498 - 4673442
Alignment:
Q  30 gacactgacacgccgacacaaataataatttgagaaaatgatatatttgagtgtaat 86  Q
    |||||||||||||||||||| |||||||||||| ||||| ||| | || ||||||||    
T  4673498 gacactgacacgccgacacagataataatttgaaaaaatcataaaattcagtgtaat 4673442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 26 - 86
Target Start/End: Complemental strand, 4786415 - 4786355
Alignment:
Q  26 acacgacactgacacgccgacacaaataataatttgagaaaatgatatatttgagtgtaat 86  Q
    ||||||||||||||||||||||| | ||||||||| ||||||| | ||| || ||||||||    
T  4786415 acacgacactgacacgccgacaccattaataatttaagaaaatcacataattcagtgtaat 4786355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 51 - 135
Target Start/End: Original strand, 8017493 - 8017577
Alignment:
Q  51 ataataatttgagaaaatgatatatttgagtgtaatcataggtatcgtgttggtgtcggacaccgacgagtgtctgacaccgaaa 135  Q
    |||||||| ||| ||||||| ||| |||||||||||||||| | ||||||  |||| ||||||||||   | |||||||||||||    
T  8017493 ataataatatgaaaaaatgacataattgagtgtaatcatagatgtcgtgtcagtgttggacaccgacacctatctgacaccgaaa 8017577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 52 - 95
Target Start/End: Complemental strand, 12559157 - 12559114
Alignment:
Q  52 taataatttgagaaaatgatatatttgagtgtaatcataggtat 95  Q
    ||||||||||||||||||||||| || |||||||||||| ||||    
T  12559157 taataatttgagaaaatgatataattcagtgtaatcatatgtat 12559114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 30 - 68
Target Start/End: Complemental strand, 36450827 - 36450789
Alignment:
Q  30 gacactgacacgccgacacaaataataatttgagaaaat 68  Q
    ||||||||||||||||||||| ||||||||||| |||||    
T  36450827 gacactgacacgccgacacaactaataatttgaaaaaat 36450789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 104
Target Start/End: Complemental strand, 18130600 - 18130531
Alignment:
Q  35 tgacacgccgacacaaataataatttgagaaaatgatatatttgagtgtaatcataggtatcgtgttggt 104  Q
    |||||| |||||||| ||||||| |||||||||||||| | || ||||||| || |||| || |||||||    
T  18130600 tgacacaccgacacagataataagttgagaaaatgatacaattaagtgtaaccagaggtgtcatgttggt 18130531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 42 - 106
Target Start/End: Complemental strand, 13009554 - 13009490
Alignment:
Q  42 ccgacacaaataataatttgagaaaatgatatatttgagtgtaatcataggtatcgtgttggtgt 106  Q
    |||||||  |||||||||||||||||  ||||| || |||||||||||| || |||||| |||||    
T  13009554 ccgacacggataataatttgagaaaacaatataatttagtgtaatcataagtgtcgtgtcggtgt 13009490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 24 - 68
Target Start/End: Original strand, 14227202 - 14227246
Alignment:
Q  24 ggacacgacactgacacgccgacacaaataataatttgagaaaat 68  Q
    ||||||| |||||||||| | |||| |||||||||||||||||||    
T  14227202 ggacacgtcactgacacgtcaacaccaataataatttgagaaaat 14227246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 30 - 86
Target Start/End: Original strand, 20873055 - 20873111
Alignment:
Q  30 gacactgacacgccgacacaaataataatttgagaaaatgatatatttgagtgtaat 86  Q
    |||||||||||||||||| | |||||||||||| ||||| | ||| || ||||||||    
T  20873055 gacactgacacgccgacatagataataatttgaaaaaatcacataatttagtgtaat 20873111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 30 - 108
Target Start/End: Complemental strand, 225341 - 225263
Alignment:
Q  30 gacactgacacgccgacacaaataataatttgagaaaatgatatatttgagtgtaatcataggtatcgtgttggtgtcg 108  Q
    |||||||||||||||||||| |||||||||||||||||||| ||| |  | |||||| ||| || ||||||||||||||    
T  225341 gacactgacacgccgacacagataataatttgagaaaatgacataatacaatgtaattataagtgtcgtgttggtgtcg 225263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0598 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0598
Description:

Target: scaffold0598; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 30 - 109
Target Start/End: Complemental strand, 8126 - 8047
Alignment:
Q  30 gacactgacacgccgacacaaataataatttgagaaaatgatatatttgagtgtaatcataggtatcgtgttggtgtcgg 109  Q
    ||||| |||||| ||| ||  |||||||||||||||||||| ||| || ||||||| |||||||||||||| ||| ||||    
T  8126 gacaccgacacgtcgatacggataataatttgagaaaatgacataattcagtgtaaacataggtatcgtgtcggtttcgg 8047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 68
Target Start/End: Original strand, 13386 - 13424
Alignment:
Q  30 gacactgacacgccgacacaaataataatttgagaaaat 68  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  13386 gacactgacacgccgacacaactaataatttgagaaaat 13424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 68
Target Start/End: Complemental strand, 21941 - 21903
Alignment:
Q  30 gacactgacacgccgacacaaataataatttgagaaaat 68  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  21941 gacactgacacgccgacacaactaataatttgagaaaat 21903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 51 - 100
Target Start/End: Original strand, 1956 - 2005
Alignment:
Q  51 ataataatttgagaaaatgatatatttgagtgtaatcataggtatcgtgt 100  Q
    ||||||||||| |||||||| |||||| ||||||||||||||| ||||||    
T  1956 ataataatttgtgaaaatgacatattttagtgtaatcataggtgtcgtgt 2005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 71701 - 71746
Alignment:
Q  22 tcggacacgacactgacacgccgacacaaataataatttgagaaaa 67  Q
    ||||||||||||||||||||||||||||  ||||||||||| ||||    
T  71701 tcggacacgacactgacacgccgacacagctaataatttgaaaaaa 71746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 22 - 74
Target Start/End: Original strand, 7988 - 8040
Alignment:
Q  22 tcggacacgacactgacacgccgacacaaataataatttgagaaaatgatata 74  Q
    |||||||||| || ||||||||||||||| ||||||||||| ||||| |||||    
T  7988 tcggacacgatacagacacgccgacacaactaataatttgaaaaaatcatata 8040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0778 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0778
Description:

Target: scaffold0778; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 41 - 115
Target Start/End: Original strand, 4403 - 4477
Alignment:
Q  41 gccgacacaaataataatttgagaaaatgatatatttgagtgtaatcataggtatcgtgttggtgtcggacaccg 115  Q
    ||||| ||| |||||||||| |||| |||||||| || ||||| ||||||| | ||||| | |||||||||||||    
T  4403 gccgaaacagataataatttaagaatatgatataattcagtgtcatcatagatgtcgtgctagtgtcggacaccg 4477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 105 - 143
Target Start/End: Original strand, 35677 - 35715
Alignment:
Q  105 gtcggacaccgacgagtgtctgacaccgaaacacaccta 143  Q
    |||||||||| ||| ||||||||||||||||||||||||    
T  35677 gtcggacaccaacgcgtgtctgacaccgaaacacaccta 35715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 30 - 68
Target Start/End: Complemental strand, 178892 - 178854
Alignment:
Q  30 gacactgacacgccgacacaaataataatttgagaaaat 68  Q
    ||||||||||||||||||||| ||||||||||| |||||    
T  178892 gacactgacacgccgacacaactaataatttgaaaaaat 178854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 30 - 86
Target Start/End: Original strand, 51797 - 51853
Alignment:
Q  30 gacactgacacgccgacacaaataataatttgagaaaatgatatatttgagtgtaat 86  Q
    ||||||||||||||||||||  ||||||||||| ||||| | ||| || ||||||||    
T  51797 gacactgacacgccgacacagctaataatttgaaaaaatcacataattcagtgtaat 51853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 30 - 86
Target Start/End: Original strand, 8784 - 8840
Alignment:
Q  30 gacactgacacgccgacacaaataataatttgagaaaatgatatatttgagtgtaat 86  Q
    ||||||||||||||||||||  ||||||||||| ||||| ||||  || ||||||||    
T  8784 gacactgacacgccgacacagctaataatttgaaaaaatcatattatttagtgtaat 8840  T

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Target: scaffold0049 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 54 - 90
Target Start/End: Original strand, 56932 - 56968
Alignment:
Q  54 ataatttgagaaaatgatatatttgagtgtaatcata 90  Q
    ||||||||||||||||||||| || ||||||||||||    
T  56932 ataatttgagaaaatgatataattcagtgtaatcata 56968  T

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Target: scaffold0022 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 30 - 86
Target Start/End: Original strand, 90829 - 90885
Alignment:
Q  30 gacactgacacgccgacacaaataataatttgagaaaatgatatatttgagtgtaat 86  Q
    ||||||||||| || |||| | ||||||||||||||||| ||||| || ||||||||    
T  90829 gacactgacacaccaacaccattaataatttgagaaaatcatataattcagtgtaat 90885  T

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Target: scaffold0004 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 30 - 86
Target Start/End: Original strand, 92793 - 92849
Alignment:
Q  30 gacactgacacgccgacacaaataataatttgagaaaatgatatatttgagtgtaat 86  Q
    |||||||||||||||||||   ||||||||||||||||| | ||| || ||||||||    
T  92793 gacactgacacgccgacaccgctaataatttgagaaaattacataattcagtgtaat 92849  T

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