View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1715-Insertion-10 (Length: 521)
Name: NF1715-Insertion-10
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715-Insertion-10 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 491; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 7 - 521
Target Start/End: Original strand, 40675857 - 40676371
Alignment:
| Q |
7 |
atatatgttagttacgatttagaatttgttgtgtatagctatgattaaatatgcaaattagttctagaatttgtaagcattggttgaaatagtgtcttac |
106 |
Q |
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| T |
40675857 |
atatatgttagttacgatttagaatttgttgtgtatagctatgattaaatatgcaaattagttctagaatttgtaagcattggttgaaatagtgtcttac |
40675956 |
T |
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| Q |
107 |
ttttgtgaattggtaaatacatcttgaaattgtaaatgtcattcaaaacagtccatctattaatttatttataacattagaggtataattttccaataac |
206 |
Q |
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| T |
40675957 |
ttttgtgaattggtaaatacatcttgaaattgtaaatgtcattcaaaacagtccatctattaatttatttataacattagaggtataatttgccaataac |
40676056 |
T |
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| Q |
207 |
tagtcactaatttgtcattgatataacctaaattttatagtcaaattagttgatagtgaactgataacattatgtgagatcgatgtgcaacatgacacgt |
306 |
Q |
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| T |
40676057 |
tagtcactaatttgtcattgatataacctaaattttatagtcaaattagttgatagtgaactgataacattatgtgagatcgatgtgcaatatgacacgt |
40676156 |
T |
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| Q |
307 |
cacaccctcttaataacagaagctaagtgagggacattttgcgtgacattttacaatttctaaaatgtatatgccaattagaaaaattgagaaattattt |
406 |
Q |
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| T |
40676157 |
cacaccctcttaataacaaaagctaagtgagggacattttgcgtgacattttacaatttctaaaatgtatatgccaattcgaaaaattgagaaattattt |
40676256 |
T |
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| Q |
407 |
caatcatacttacagtttcggtgactaatctgctgattcagttttttagttattgagcagcaagaacatttaactgtaaattagtatatcactgtaataa |
506 |
Q |
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| T |
40676257 |
caatcatacttacagtttcggtgactaatctgctgattcatttttttaggtattgagcagcaagaacatttaactgtaaattagtatatcactgtaataa |
40676356 |
T |
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| Q |
507 |
cagtataacatttga |
521 |
Q |
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| T |
40676357 |
cagtataacatttga |
40676371 |
T |
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Back To:
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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 215 - 266
Target Start/End: Original strand, 10096829 - 10096880
Alignment:
| Q |
215 |
aatttgtcattgatataacctaaattttatagtcaaattagttgatagtgaa |
266 |
Q |
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| T |
10096829 |
aatttgtcactgatatgacctaaattttataggcaaattagttgatagtgaa |
10096880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 107 - 169
Target Start/End: Original strand, 31586077 - 31586141
Alignment:
| Q |
107 |
ttttgtgaattggtaaatacatc-ttgaaattgtaaa-tgtcattcaaaacagtccatctattaa |
169 |
Q |
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| T |
31586077 |
ttttgagaattggtaaatacatcattgaaattgtaaagtttcagtcaaaatagtccatctattaa |
31586141 |
T |
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