View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1715-Insertion-12 (Length: 813)
Name: NF1715-Insertion-12
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715-Insertion-12 |
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| [»] chr1 (4 HSPs) |
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| [»] scaffold1918 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 530; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 192 - 813
Target Start/End: Original strand, 11878699 - 11879321
Alignment:
| Q |
192 |
gcattttggagttacttttgtcaaatgaggcaactcagc-agggctgctaagaggaaatgacaaaggaataggacacaacattttaccctacccatctct |
290 |
Q |
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| T |
11878699 |
gcattttggagttacttttgtcaaatgaggcaactcagctagggctgctaagaggaaatgacataggaataggacacaacattttaccctacccatctct |
11878798 |
T |
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| Q |
291 |
tcttctaatcattcaaaatttgtcaagatgcttctaaccattttatgtatattttaattagtagttgaagattgaaacagtgactgattctaactatttg |
390 |
Q |
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| T |
11878799 |
t---ctaatcattcaaaatttgtcaagatgcttctaaccattttgcgtatattttaattagtggttgaagattgaaacagtgactgattctaactatttg |
11878895 |
T |
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| Q |
391 |
gagtaaaacaaagtaatgggagagaagtggccagctgggaaacataatataatgcaattacatcaaaatgaaaccaattgaatatttgaattggtccttc |
490 |
Q |
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| T |
11878896 |
gagtaaaacaaagtaatgggagagaagtggccagctgggaaacataatataatgcaattacatcaaaatgaaaccaattgaatatttgaattggtccttc |
11878995 |
T |
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| Q |
491 |
atgatggctaccctttaacaattcaatcacattataaatacttagtctctcatttagcttttcacaataatcacttacaccaaaaca---tcttttcttc |
587 |
Q |
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| T |
11878996 |
atgatggctaccctttaacaattcaatcacattataaatacttagtctctcatttagcttttcacaataatcacttacaccaaaacatcttcttttcttc |
11879095 |
T |
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| Q |
588 |
caaacttttcttctacttctaagaatattaggaagagtaactaagaaccaaagcattggaggtgctaagttttttcattctacccatgactgctaaggcc |
687 |
Q |
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| T |
11879096 |
caaacttttcttctacttctaagaatattagggaggttaagtaataacataagcattggaggtgccaagttttttctttctacccatgactgttaaggcc |
11879195 |
T |
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| Q |
688 |
agtagccccgaaaggggtcataactggccaccaatggcaatggcattggccattgttttgatttcaactagtgtggtttctgctgctgcagatagttata |
787 |
Q |
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| T |
11879196 |
agtagccccaaaaggggtcataactggccaccaatggcaatggcattggccattgttttgatttcaactagtgtggtttctgctgctgcagatagttata |
11879295 |
T |
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| Q |
788 |
tttactcttctcctccaccaccttac |
813 |
Q |
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| T |
11879296 |
tttactcttctcctccaccaccttac |
11879321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 120; E-Value: 6e-61
Query Start/End: Original strand, 6 - 152
Target Start/End: Original strand, 11878512 - 11878659
Alignment:
| Q |
6 |
caaaaagaaaaagaatcaattagtggaacaaaatctcacaatgttacaacaggtacaatcta-ggatttgaagaaatatcataaaccactttggatccat |
104 |
Q |
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| T |
11878512 |
caaaaagaaaaagaatcaattagtggaacaaaatctcacaatgttacaatagctacaatcaaaggatttgaagaaatatcataaaccactttggatccat |
11878611 |
T |
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| Q |
105 |
aatgcataatactcaaaatagaatatatattcactttccattctctct |
152 |
Q |
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| T |
11878612 |
aatgcataatactcaaaatacaatatatattcactttccattccctct |
11878659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 665 - 812
Target Start/End: Original strand, 11901772 - 11901916
Alignment:
| Q |
665 |
ttctacccatgactgctaaggccagtagccccgaaaggggtcataactggccaccaatggcaatggcattggccattgttttgatttcaactagtgtggt |
764 |
Q |
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| T |
11901772 |
ttctatccatgactgctagggctagttgccccaaaatggggcatttttggccacaaatggcaatggcattggccattgttttgatttctactactatggt |
11901871 |
T |
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| Q |
765 |
ttctgctgctgcagatagttatatttactcttctcctccaccacctta |
812 |
Q |
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| T |
11901872 |
ttctgcttct---gatagctacatttactcttcgcctccaccacctta |
11901916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 461 - 511
Target Start/End: Original strand, 11901649 - 11901699
Alignment:
| Q |
461 |
aaaccaattgaatatttgaattggtccttcatgatggctaccctttaacaa |
511 |
Q |
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| T |
11901649 |
aaacaaattgaatattggaattggtccttcatgatagcttccccttaacaa |
11901699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1918 (Bit Score: 132; Significance: 4e-68; HSPs: 1)
Name: scaffold1918
Description:
Target: scaffold1918; HSP #1
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 657 - 812
Target Start/End: Complemental strand, 747 - 592
Alignment:
| Q |
657 |
ttttttcattctacccatgactgctaaggccagtagccccgaaaggggtcataactggccaccaatggcaatggcattggccattgttttgatttcaact |
756 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||| |
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| T |
747 |
ttttttcattctacccatgactgctaaggccagtagccccaaaaggggtcataactggccaccaatggcaatggcattcgtcattgttttgatttcgact |
648 |
T |
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| Q |
757 |
agtgtggtttctgctgctgcagatagttatatttactcttctcctccaccacctta |
812 |
Q |
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| T |
647 |
tctgtggtttctgctgctgcagatagttatatttactcttctcctccaccacctta |
592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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