View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1715-Insertion-13 (Length: 816)
Name: NF1715-Insertion-13
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715-Insertion-13 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 774; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 774; E-Value: 0
Query Start/End: Original strand, 8 - 816
Target Start/End: Original strand, 28272571 - 28273380
Alignment:
| Q |
8 |
gcagggactgacacctcttcaaaatcaggcataagcacgggtgcattggttggtataatattaggctcaattgcatgtgtaatttcgctgtctgcaattt |
107 |
Q |
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| T |
28272571 |
gcagggactgacacctcttcaaaatcaggcataagcacgggtgcattggttggtataatattaggctcaattgcatgtgtaatttcgctgtctgcaattt |
28272670 |
T |
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| Q |
108 |
ttattcttttaatcttaagagtaagattaagacgtcatgatgcaatttccaaaccacgtcattgtgagtttctccttactatgaatcaacttctttcact |
207 |
Q |
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| T |
28272671 |
ttattcttttaatcttaagagtaagattaagacgtcatgatgcaatttccaaaccacgtcattgtgagtttctccttactatgaatcaacttctttcact |
28272770 |
T |
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| Q |
208 |
cgtctcaagttaggcccttgtcatgataaaaaatcttgatgttattaattatgtgctactctatcttttactaaaccagatttgaaaactatttatcttt |
307 |
Q |
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| T |
28272771 |
cgtctcaagttaggcccttgtcatgataaaaaatcttgatgttattaattatgtgctactctatcttttactaaaccagatttgaaaactatttatcttt |
28272870 |
T |
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| Q |
308 |
tatcattattcaagtagtcttagttaatgtttcacattaacctttgacaatgtcatttggtatattattacagagtttattaatatagatttttattcac |
407 |
Q |
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| T |
28272871 |
tatcattattcaagtagtcttagttaatgtttcacattaacctttgacaatgtcatttggtatattattacagagtttattaatatagatttttattcac |
28272970 |
T |
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| Q |
408 |
agcatctaggatatcaatgcaaattgatgggacaagggcttttacttatgaagaattgtcttctgctacaagaaattttgacaacaatgctcaaattgga |
507 |
Q |
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| T |
28272971 |
agcatctaggatatcaatgcaaattgatgggacaagggcttttacttatgaagaattgtcttctgctacaagaaaatttgacaacaatgctcaaattgga |
28273070 |
T |
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| Q |
508 |
caaggaggctat-ggaaggtatataaaggtattctttcgaacgggactgtggttgccataaaacgtgcacaacaaggatcgttgcaaggtgagaaggagt |
606 |
Q |
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| T |
28273071 |
caaggaggctatgggaaggtatataaaggtattctttcgaacgggactgtggttgccataaaacgtgcacaacaaggatcgttgcaaggtgagaaggagt |
28273170 |
T |
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| Q |
607 |
ttcttacagaaatatcaatactatcaaggatacatcaccgtaaccttgtagctttgattggatattgtgatgaagaaggtgaacaggtaactttttgttt |
706 |
Q |
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| T |
28273171 |
ttcttacagaaatatcaatactatcaaggatacatcaccgtaaccttgtagctttgattggatattgtgatgaagcaggtgaacaggtaacatattgttt |
28273270 |
T |
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| Q |
707 |
caaaattcataaacttcaacacttgctagatttcatttttatatttggtatcattgtgttggattctgaatgtaagtttcggagttttaacattcaaaaa |
806 |
Q |
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| T |
28273271 |
caaaattcataaacttcaacacttgctagatttcatttttatatttagcatcattgtgttggattctgaatgtaagtttcggagttttaacattcgaaaa |
28273370 |
T |
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| Q |
807 |
ttccattgac |
816 |
Q |
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| T |
28273371 |
ttccattgac |
28273380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 451 - 692
Target Start/End: Original strand, 28288353 - 28288595
Alignment:
| Q |
451 |
acttatgaagaattgtcttctgctacaagaaattttgacaacaatgctcaaattggacaaggaggctatgg-aaggtatataaaggtattctttcgaacg |
549 |
Q |
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| T |
28288353 |
acttatgaagaattgtcctctgctacgaacaattttagcagctccgctcaagtcggacaagggggctatgggaaggtatataaaggtgtcatttctggtg |
28288452 |
T |
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| Q |
550 |
ggactgtggttgccataaaacgtgcacaacaaggatcgttgcaaggtgagaaggagtttcttacagaaatatcaatactatcaaggatacatcaccgtaa |
649 |
Q |
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| || | |||||||||||||||||||| | || || ||||||| ||||||||||| ||||| |||||||| ||||||||||| ||||||| || || |
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| T |
28288453 |
gaacagctgttgccataaaacgtgcacaggaggggtcactgcaaggcgagaaggagttccttactgaaatatcgctactatcaaggttacatcatcgcaa |
28288552 |
T |
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| Q |
650 |
ccttgtagctttgattggatattgtgatgaagaaggtgaacag |
692 |
Q |
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| T |
28288553 |
tcttgtgtctttgattggatactgtgacgaagaaggtgaacag |
28288595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 79; Significance: 2e-36; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 495 - 703
Target Start/End: Complemental strand, 32191237 - 32191028
Alignment:
| Q |
495 |
tgctcaaattggacaaggaggctatgg-aaggtatataaaggtattctttcgaacgggactgtggttgccataaaacgtgcacaacaaggatcgttgcaa |
593 |
Q |
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|||| |||||||||||||||| ||||| ||||| |||||||||| |||| | || ||||| ||||||||||||||||||||| |||| || ||||| |
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| T |
32191237 |
tgctgaaattggacaaggagggtatgggaaggtttataaaggtaatcttcatgatggaactgtcgttgccataaaacgtgcacaagaaggttcactgcaa |
32191138 |
T |
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| Q |
594 |
ggtgagaaggagtttcttacagaaatatcaa-tactatcaaggatacatcaccgtaaccttgtagctttgattggatattgtgatgaagaaggtgaacag |
692 |
Q |
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||||||| |||||||||||||||||| |||| | ||||||||| ||||||| || || ||||| |||||||||| || ||||||||||| ||||||||| |
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| T |
32191137 |
ggtgagagggagtttcttacagaaat-tcaactgctatcaaggttacatcatcgcaatcttgtctctttgattggttactgtgatgaagatggtgaacag |
32191039 |
T |
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| Q |
693 |
gtaactttttg |
703 |
Q |
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| T |
32191038 |
gtaactatttg |
32191028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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