View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1715-Insertion-2 (Length: 234)
Name: NF1715-Insertion-2
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715-Insertion-2 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
| [»] chr5 (1 HSPs) |
| |
|
| [»] chr8 (1 HSPs) |
| |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 8 - 234
Target Start/End: Complemental strand, 4775940 - 4775714
Alignment:
| Q |
8 |
tcttggtcatgcaagaagcagccaactgttgcaaaatcgtcaactgaagctgaatatcgtactatagcagccactactcaagagttaatatgggttcaaa |
107 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
4775940 |
tcttggtcatgcaagaagcaaccaacaattgcaaaatcgtcaactgaagctgaatatcgtactatagcagccactactcaagaattaatatgggttcaaa |
4775841 |
T |
|
| Q |
108 |
atttgttacaagaacttcaaattccattaactgcaccaacaatattctcagacaacattggagctacatatctatgtgcaaacccagtttttcactctag |
207 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || ||||||||||| |
|
|
| T |
4775840 |
acttgttacaagaacttcaaattccattaactgcaccaacaatattctaagacaacattggagctacatatctatgtgcaaaccctgtctttcactctag |
4775741 |
T |
|
| Q |
208 |
gatgaaagatattgccatagattatca |
234 |
Q |
| |
|
|||||| ||||||||||||||||||| |
|
|
| T |
4775740 |
gatgaagcatattgccatagattatca |
4775714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 8 - 234
Target Start/End: Complemental strand, 43061301 - 43061075
Alignment:
| Q |
8 |
tcttggtcatgcaagaagcagccaactgttgcaaaatcgtcaactgaagctgaatatcgtactatagcagccactactcaagagttaatatgggttcaaa |
107 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||| || |||||||||||||||| |
|
|
| T |
43061301 |
tcttggtcatgcaagaagcagccaacagttgcaaaatcatcaactgaagctgaatatcggactatagcagccactactcaggaattaatatgggttcaaa |
43061202 |
T |
|
| Q |
108 |
atttgttacaagaacttcaaattccattaactgcaccaacaatattctcagacaacattggagctacatatctatgtgcaaacccagtttttcactctag |
207 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||| |
|
|
| T |
43061201 |
acttgttacaagaacttcaaattccattaactgcaccaacgatattctcagacaacattagagctacatatctatgtgcaaaccctgtttttcactatag |
43061102 |
T |
|
| Q |
208 |
gatgaaagatattgccatagattatca |
234 |
Q |
| |
|
||||||| | ||||||||||||||||| |
|
|
| T |
43061101 |
gatgaaacacattgccatagattatca |
43061075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 161 - 214
Target Start/End: Original strand, 45192874 - 45192927
Alignment:
| Q |
161 |
aacattggagctacatatctatgtgcaaacccagtttttcactctaggatgaaa |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || |||||||| |||||||| |
|
|
| T |
45192874 |
aacattggagctacatatctatgtgcaaaccctgtccttcactctcggatgaaa |
45192927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 234
Target Start/End: Original strand, 25450346 - 25450425
Alignment:
| Q |
155 |
tcagacaacattggagctacatatctatgtgcaaacccagtttttcactctaggatgaaagatattgccatagattatca |
234 |
Q |
| |
|
||||||||||| || || |||||||||||||| |||||||||||||| || | ||||| || |||| ||||||||||| |
|
|
| T |
25450346 |
tcagacaacatcggtgcaacatatctatgtgcgaacccagtttttcatactcgaatgaagcatcttgcaatagattatca |
25450425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 234
Target Start/End: Complemental strand, 2607367 - 2607288
Alignment:
| Q |
155 |
tcagacaacattggagctacatatctatgtgcaaacccagtttttcactctaggatgaaagatattgccatagattatca |
234 |
Q |
| |
|
||||||||||| || || |||||||||||||| |||||||||||||| || | ||||| || |||| ||||||||||| |
|
|
| T |
2607367 |
tcagacaacatcggtgcaacatatctatgtgcgaacccagtttttcatactcgaatgaagcatcttgcaatagattatca |
2607288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University