View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1715-Insertion-5 (Length: 232)
Name: NF1715-Insertion-5
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715-Insertion-5 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 7 - 232
Target Start/End: Complemental strand, 25816648 - 25816423
Alignment:
| Q |
7 |
aacctgaactgttgtgatctaaccacattagaattggtaacttgagaaggatatctctgaagttgttggttcacattctgatacccctgcattgctgtcg |
106 |
Q |
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| T |
25816648 |
aacctgaactgttgtgatctaaccacattagaattggtaagttgagaaggatatctctgaagttgttggttcacattctgatacccctgcattgctgtcg |
25816549 |
T |
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| Q |
107 |
gagattgtatcgatgacccaaaatagccttcaaggctagtaggattcactccagcaagcctacttgacccttccatcattagatttggcatattgtgata |
206 |
Q |
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| T |
25816548 |
gagattgtatcgatgacccaaaatagccttcaaggttagtaggattcactccagcaagcctacttgacccttccatcattagatttggcatattgtgata |
25816449 |
T |
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| Q |
207 |
ttcaaaaaatttcatgtccagatgag |
232 |
Q |
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| T |
25816448 |
ttcgaaaaatttcatgtccagatgag |
25816423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 67 - 223
Target Start/End: Complemental strand, 25822387 - 25822231
Alignment:
| Q |
67 |
agttgttggttcacattctgatacccctgcattgctgtcggagattgtatcgatgacccaaaatagccttcaaggctagtaggattcactccagcaagcc |
166 |
Q |
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| T |
25822387 |
agttcttggttcacattttgatgcaccagcatgtctttcgaagattgtatcgatgacccaaaaatgtcttcatggttagtaggattcactcctgcaagtc |
25822288 |
T |
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| Q |
167 |
tacttgacccttccatcattagatttggcatattgtgatattcaaaaaatttcatgt |
223 |
Q |
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| T |
25822287 |
tatttgactcttctattattagcttcggcatatgacgattttcgagaaatttcatgt |
25822231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 93 - 173
Target Start/End: Complemental strand, 25813315 - 25813235
Alignment:
| Q |
93 |
ctgcattgctgtcggagattgtatcgatgacccaaaatagccttcaaggctagtaggattcactccagcaagcctacttga |
173 |
Q |
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| T |
25813315 |
ctgcattgtggtcggagattgtatcgatgacccgaaaaagttttcaaggttagtaggattcactcttgcaagcctatttga |
25813235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 173
Target Start/End: Complemental strand, 25819049 - 25818906
Alignment:
| Q |
30 |
cacattagaattggtaacttgagaaggatatctctgaagttgttggttcacattctgatacccctgcattgctgtcggagattgtatcgatgacccaaaa |
129 |
Q |
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| T |
25819049 |
cacattggaattggaaagattagaaggatatccccaaagttgctggtttgcgttctgatgcacctgcattgaggtcggagaatgtaacactgacccgaaa |
25818950 |
T |
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| Q |
130 |
tagccttcaaggctagtaggattcactccagcaagcctacttga |
173 |
Q |
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| T |
25818949 |
aagttttcaaggttagtaggattcactcctgcaagcctatttga |
25818906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 83 - 173
Target Start/End: Complemental strand, 33648530 - 33648440
Alignment:
| Q |
83 |
tctgatacccctgcattgctgtcggagattgtatcgatgacccaaaatagccttcaaggctagtaggattcactccagcaagcctacttga |
173 |
Q |
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| T |
33648530 |
tctgatgcacctgtattgatgtcggagattgtattgatgacccaaaaatgttttcaaggttagtaggattcactcctgcaagcctatttga |
33648440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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