View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1715-Insertion-6 (Length: 235)
Name: NF1715-Insertion-6
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715-Insertion-6 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 6 - 235
Target Start/End: Original strand, 9735975 - 9736206
Alignment:
| Q |
6 |
caattttattatcctccttgttgtcttagattgcgatgcat--catcagctcctttatgctcagcaaccaaaatacaaatagccgagttaatagctttgg |
103 |
Q |
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| T |
9735975 |
caattttattatcctccttgttgtcttagattgcgatgcatatcatcagctcctttatgctcagcaaccaaaatacaaatagccgagttaatagctttgg |
9736074 |
T |
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| Q |
104 |
cagctattgctactcctgctatcatacctccgcctgcagttaaccccccaaccaaatattagatcacagattgagcagagattttactgggtgacaatcc |
203 |
Q |
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| T |
9736075 |
cagctattgctactcctgctatcatacctccgcctgcagttaaccccccaaccaaatattagatcacagatggagcagagattttactgggtgacaatcc |
9736174 |
T |
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| Q |
204 |
tctaatgtgatatttgtgatgcatatgataca |
235 |
Q |
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| T |
9736175 |
tctaatgtgatatttgtgatgcatatgataca |
9736206 |
T |
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Target: chr1 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 42 - 141
Target Start/End: Original strand, 24817465 - 24817564
Alignment:
| Q |
42 |
tgcatcatcagctcctttatgctcagcaaccaaaatacaaatagccgagttaatagctttggcagctattgctactcctgctatcatacctccgcctgca |
141 |
Q |
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| T |
24817465 |
tgcatcatcagctcctttaggctcagcagccaaaatacgaatagccggattaatcgccttggcagctattgctattcctgctatcataccgccgcctgca |
24817564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 42 - 141
Target Start/End: Original strand, 24800389 - 24800488
Alignment:
| Q |
42 |
tgcatcatcagctcctttatgctcagcaaccaaaatacaaatagccgagttaatagctttggcagctattgctactcctgctatcatacctccgcctgca |
141 |
Q |
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| T |
24800389 |
tgcatcatcagctcctttaggctcagcagccaaaatacgaatagccggattaatcgccttggcagctattgctattcctgctatcataccgccacctgca |
24800488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 6 - 119
Target Start/End: Complemental strand, 41876418 - 41876305
Alignment:
| Q |
6 |
caattttattatcctccttgttgtcttagattgcgatgcatcatcagctcctttatgctcagcaaccaaaatacaaatagccgagttaatagctttggca |
105 |
Q |
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| T |
41876418 |
caatgttattatcctcccagctgctttagattgcgctgcatcatcagctccttttggctcagcagccaaaatccgaatagacgggttaatggccttggca |
41876319 |
T |
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| Q |
106 |
gctattgctactcc |
119 |
Q |
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| T |
41876318 |
gctaatgctactcc |
41876305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 144
Target Start/End: Original strand, 40867673 - 40867786
Alignment:
| Q |
31 |
ttagattgcgatgcatcatcagctcctttatgctcagcaaccaaaatacaaatagccgagttaatagctttggcagctattgctactcctgctatcatac |
130 |
Q |
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|||||||| | ||| ||||| || |||||| | |||||| ||||||||| ||| |||| ||| |||| |||||||| | ||||||||||| ||||| || |
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| T |
40867673 |
ttagattgtgctgcgtcatcggcccctttaggttcagcagccaaaatacgaatggccgggttgatagacttggcagccaatgctactcctgatatcaaac |
40867772 |
T |
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| Q |
131 |
ctccgcctgcagtt |
144 |
Q |
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| T |
40867773 |
cacctcctgcagtt |
40867786 |
T |
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