View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1715-Insertion-8 (Length: 867)
Name: NF1715-Insertion-8
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715-Insertion-8 |
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Alignment Details
Target: chr3 (Bit Score: 530; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 7 - 647
Target Start/End: Complemental strand, 39215380 - 39214743
Alignment:
| Q |
7 |
atttcagttattacgaattttgtctaatcacttcgaatttgtatttctcttggattttgatctcaaacaatttgatattttatttaggttaaatacttct |
106 |
Q |
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| T |
39215380 |
atttcagttattacgaattttgtctgattacttcgaatttgtatttctcttgaattttgatctcaaacaatttgatattttatttaggttaaatacttct |
39215281 |
T |
|
| Q |
107 |
cggggtcctttcaatttaacatttttatccggttagtctttaagttttttaagtttcaaattaatctttaagtcacacaacgtctgcaacattacctttt |
206 |
Q |
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||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
39215280 |
cggggtcctttcaatttaacatttttatcgggttaatctttaagttttttaagtttcaaattaatctttaagtcacacaacgtctgcaacgttacctttt |
39215181 |
T |
|
| Q |
207 |
tctgtccaaccctgttaaatgaggcttgtgcagttgtcaaacactaatgtggcctgaccaaatcattaannnnnnncctgagttttctatgatcttcatc |
306 |
Q |
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| T |
39215180 |
tctgtccaaccctgttaaatgaggcttgtgcagttgtcaaacactaatgtggcccgaccaaatcattaatttttttcctgagttttctatgatcttcatc |
39215081 |
T |
|
| Q |
307 |
gtcttcctcttcatatacatcgacattcatcattttctccccctcttcaaactcaaacccaaaaaatccaagagaagaatattgggaattgggaagnnnn |
406 |
Q |
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| T |
39215080 |
gtcttcctcttcatatacatcgacattcatcattttctccccctcttcaaactcaaacccaaaaaatccaagagaagaatattaggaattgggaa---ag |
39214984 |
T |
|
| Q |
407 |
nnnnnngaagaagatatgaatcaaccatagataatgtagaaattttcagcaacccattttctattcaatttaactttcttaatttgttccaacaattgaa |
506 |
Q |
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| T |
39214983 |
aaaaaaaaaaaagatatgaatcaaccatagataatgtagaaattttcagcaacccattttctattcaatttaactttcttaatttgttccaacaattgaa |
39214884 |
T |
|
| Q |
507 |
gtttcagtcacctcattttcaactcaattttgactttaatttgttgtcttaatgtgtttttctactttcaattttccatctttatagtttaattgacacg |
606 |
Q |
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||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
39214883 |
gtttcagtcacctcattttcaactcaactttggctttaatttgttgtcttaatgtgtttttctactttcaattttccatctttatagtttaatttacacg |
39214784 |
T |
|
| Q |
607 |
gtttttgctcgtttgttataaaactttgaacttttttctca |
647 |
Q |
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| T |
39214783 |
gtttttgctcgtttgttataaaactttgaacttttttctca |
39214743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 647 - 867
Target Start/End: Complemental strand, 39214138 - 39213918
Alignment:
| Q |
647 |
actttgaaacatccaatttaattagagagctgacacattgttgtagctacaggtgtataatgaagttccttttgaacttatttcaaatgatctaatatcg |
746 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39214138 |
actttgaaacatccaatttaattagagagctgacacattgttgtagctacaggtgtataatgaagttccttttgaacttatttcaaatgatctaatatcg |
39214039 |
T |
|
| Q |
747 |
gtattagaaagatattaggttgggaggaccaaccatcatcgtgaacctcacacggatgactctgagcaattgatatagtccactcttgttgatggctttt |
846 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39214038 |
gtattagaaagatattaggttgggaggaccaaccatcatcgtgaacctcacacggatgactctgagcaattgatatagtccactcttgttgatggctttt |
39213939 |
T |
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| Q |
847 |
gttcattcaactctcttcaca |
867 |
Q |
| |
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||||||||||||||||||||| |
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| T |
39213938 |
gttcattcaactctcttcaca |
39213918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 294 - 344
Target Start/End: Original strand, 37554596 - 37554646
Alignment:
| Q |
294 |
tatgatcttcatcgtcttcctcttcatatacatcgacattcatcattttct |
344 |
Q |
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| T |
37554596 |
tatgatcttcattttcttcctcttcatatatatcaacattcatcattttct |
37554646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 233
Target Start/End: Complemental strand, 37555462 - 37555377
Alignment:
| Q |
149 |
agttttttaagtttcaaattaatcttt-aagtcacacaacgtctgcaacattacctttttctgtccaaccctgttaaatgaggctt |
233 |
Q |
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|||||||||||||| |||| |||||| ||||||||||| | |||| | ||||| ||||| |||||||| |||||||| |||||| |
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| T |
37555462 |
agttttttaagttttaaatcgatctttgaagtcacacaaagcttgcaccgttacccttttccgtccaaccatgttaaattaggctt |
37555377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 4e-25; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 308 - 395
Target Start/End: Original strand, 17770728 - 17770815
Alignment:
| Q |
308 |
tcttcctcttcatatacatcgacattcatcattttctccccctcttcaaactcaaacccaaaaaatccaagagaagaatattgggaat |
395 |
Q |
| |
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| T |
17770728 |
tcttcctctttatatacatcaccattcatcattttctcccccttttaaaactcaaacccaaaaaatccaagagaaaaatactgggaat |
17770815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 504 - 600
Target Start/End: Original strand, 17770817 - 17770913
Alignment:
| Q |
504 |
gaagtttcagtcacctcattttcaactcaattttgactttaatttgttgtcttaatgtgtttttctactttcaattttccatctttatagtttaatt |
600 |
Q |
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| T |
17770817 |
gaagtttcattcacctctttttcaactcaattttagtttcaatttgttgtcttaatgtgtttttctgcttccaatttttcatctttatagttaaatt |
17770913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 207
Target Start/End: Complemental strand, 17771218 - 17771156
Alignment:
| Q |
145 |
tttaagttttttaagtttcaaattaatctttaagtcacacaacgtctgcaacattaccttttt |
207 |
Q |
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| T |
17771218 |
tttaagttttttaatttttaaattggtctttaagtcacacaacgtttgtaacgttaccctttt |
17771156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 530 - 613
Target Start/End: Complemental strand, 11686390 - 11686307
Alignment:
| Q |
530 |
tcaattttgactttaatttgttgtcttaatgtgtttttctactttcaattttccatctttatagtttaattgacacggtttttg |
613 |
Q |
| |
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||||||||| ||| ||||||||||||||||| |||||||| ||| |||||||| ||||||| ||| |||| ||| || ||||| |
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| T |
11686390 |
tcaattttggcttcaatttgttgtcttaatgcgtttttctgcttcgaattttccgtctttatcgttcaattaacatgggttttg |
11686307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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