View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1715-Insertion-9 (Length: 672)
Name: NF1715-Insertion-9
Description: NF1715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1715-Insertion-9 |
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| [»] chr4 (2 HSPs) |
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| [»] chr8 (9 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 418; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 239 - 672
Target Start/End: Original strand, 48904565 - 48904998
Alignment:
| Q |
239 |
tattgggagaaactcatgtaaatctcagattttgaaatgattgtaagtggtgaaaatcacatgaacttcactcaataaattcacccaataaaagagagtg |
338 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48904565 |
tattgggagaaactcatgtaaatctcagattttgaaatgattgtaagtggtgaaaatcacatgaacttcactcaataaattcacccaataaaagagagtg |
48904664 |
T |
|
| Q |
339 |
agttttagagttaatgttagaaaataaagtgttatgagcatttctctttaatacataacacaatcatgtggaaccaatgactaactacaccaccacaaac |
438 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
48904665 |
agtgttagagttaatgttagaaaataaagtgttatgagcatttctctttaatacataacacaatcatgtggaaccgatgactaactacaccaccacaaac |
48904764 |
T |
|
| Q |
439 |
acaccaatggaattttatgagctattttttctctccacattgcttagttcaaattttgtaatgtgaaagaacagaagtacaacctagtctttttgctgct |
538 |
Q |
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|||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48904765 |
acaccaatggaactttatgagctattttttccctccacattgcttagttcaaattttgtaatgtgaaagaacagaagtacaacctagtctttttgctgct |
48904864 |
T |
|
| Q |
539 |
ggagagtagactgcatagtctccaattgtggtttctctgtatttgggaggattgtcttcagataatagttcctttataggtccatagagccttgaggata |
638 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48904865 |
ggagagtagactgcatagtctccaattgtggtttctctgtatttgggaggattgtcttcagataatagttcctttataggtccatagagccttgaggata |
48904964 |
T |
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| Q |
639 |
atttatgaccattgtagaaaaagcatgcagcaga |
672 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
48904965 |
atttatgaccattgtagaaaaagcatgcagcaga |
48904998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 8 - 205
Target Start/End: Original strand, 48904334 - 48904531
Alignment:
| Q |
8 |
tgtgtcatcttcttaagattgtagattgtcccctgacataaacaccatttagctccttaaaaatcttagcaaggaaactcaatggaataaaatctggtga |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
48904334 |
tgtgtcatcttcttaagattgtagattgtcccctgacataaacaccatttagctccttaaaaatcttagcaagaaaactcaatggaataaaatctggtga |
48904433 |
T |
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| Q |
108 |
tgggaaaaaaggtttaccacaaataaattggaaataaatcagcagcaccaacggtaatcagaaatcccttatttaatacataaagagtgttatgacca |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
48904434 |
tgggaaaaaaggtttaccacaaataaattggaaataaatcagcagcaccaacggtaatcagaaatcccttatttaatacataaatagtgttatgacca |
48904531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 86; Significance: 9e-41; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 461 - 672
Target Start/End: Complemental strand, 10769669 - 10769462
Alignment:
| Q |
461 |
tattttttctctccacattgcttagttcaaattttgtaatgtgaaagaacagaagtacaacctagtctttttgctgctggagagtagactgcatagtctc |
560 |
Q |
| |
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|||||||||| ||||||||||||||||||||| |||||||||| |||| ||||||||| | |||||| ||||||| | | | ||| || ||||||| |
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| T |
10769669 |
tattttttct-tccacattgcttagttcaaatcttgtaatgtgtaagagcagaagtaccatctagtccttttgcttc---aaaataggctacatagtcag |
10769574 |
T |
|
| Q |
561 |
caattgtggtttctctgtatttgggaggattgtcttcagataatagttcctttataggtccatagagccttgaggataatttatgaccattgtagaaaaa |
660 |
Q |
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||| || ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |||||||| | ||||||| || ||||||| |
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| T |
10769573 |
caactgaggtttctctgtatatgggaggattgtcttctgataatagttcctttataggtccatagagctttgaggatgacctatgaccggtgcagaaaaa |
10769474 |
T |
|
| Q |
661 |
gcatgcagcaga |
672 |
Q |
| |
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|||||| |||| |
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| T |
10769473 |
acatgcaacaga |
10769462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 460 - 633
Target Start/End: Original strand, 1948010 - 1948179
Alignment:
| Q |
460 |
ctattttttctctccacattgcttagttcaaattttgtaatgtgaaagaacagaagtacaacctagtctttttgctgctggagagtagactgcatagtct |
559 |
Q |
| |
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||||||||||| |||||| ||| |||||||||| |||||||||| |||| ||||||||| | |||||| ||||||| | ||||| ||||||| || |
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| T |
1948010 |
ctattttttct-tccacactgcctagttcaaatcttgtaatgtgtaagagcagaagtaccatctagtccttttgcttt---aaagtaggctgcataatca |
1948105 |
T |
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| Q |
560 |
ccaattgtggtttctctgtatttgggaggattgtcttcagataatagttcctttataggtccatagagccttga |
633 |
Q |
| |
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||| |||||||||||| ||||||| |||||| | ||| |||||||||||||| ||||||||||||||| |||| |
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| T |
1948106 |
gcaactgtggtttctctatatttggaaggattcttttctgataatagttccttcataggtccatagagctttga |
1948179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 473 - 633
Target Start/End: Complemental strand, 2052144 - 2051987
Alignment:
| Q |
473 |
ccacattgcttagttcaaattttgtaatgtgaaagaacagaagtacaacctagtctttttgctgctggagagtagactgcatagtctccaattgtggttt |
572 |
Q |
| |
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|||||||||||||||||||| |||||||||| |||| ||||||||| | |||||| ||||||| || ||||| || |||| || ||| | |||| |
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| T |
2052144 |
ccacattgcttagttcaaatcttgtaatgtgtaagagcagaagtaccatctagtccttttgctc---gaaagtaggctacataatcagcaacagaagttt |
2052048 |
T |
|
| Q |
573 |
ctctgtatttgggaggattgtcttcagataatagttcctttataggtccatagagccttga |
633 |
Q |
| |
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||||||||||||||||||||||||| |||| |||||||| ||||||||||||||| |||| |
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| T |
2052047 |
ctctgtatttgggaggattgtcttctgatagcagttccttcataggtccatagagctttga |
2051987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 483 - 633
Target Start/End: Complemental strand, 2030001 - 2029854
Alignment:
| Q |
483 |
tagttcaaattttgtaatgtgaaagaacagaagtacaacctagtctttttgctgctggagagtagactgcatagtctccaattgtggtttctctgtattt |
582 |
Q |
| |
|
|||||||||| |||||||||| |||| ||||||||| | |||||| |||||| | ||||| ||||| | || ||| |||||||||||||||||| |
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| T |
2030001 |
tagttcaaatcttgtaatgtgtaagagcagaagtaccatctagtccttttgcatt---aaagtaggctgcaaaatcagcaactgtggtttctctgtattt |
2029905 |
T |
|
| Q |
583 |
gggaggattgtcttcagataatagttcctttataggtccatagagccttga |
633 |
Q |
| |
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||||||||||| ||| |||||||||||||| ||||||||||||||| |||| |
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| T |
2029904 |
gggaggattgttttctgataatagttccttcataggtccatagagctttga |
2029854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 569 - 637
Target Start/End: Complemental strand, 2034836 - 2034768
Alignment:
| Q |
569 |
gtttctctgtatttgggaggattgtcttcagataatagttcctttataggtccatagagccttgaggat |
637 |
Q |
| |
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|||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |||||||| |
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| T |
2034836 |
gtttctctgtatttaggaggattgtcttctgataatagttcctttataggtccatagagctttgaggat |
2034768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 565 - 666
Target Start/End: Complemental strand, 2038918 - 2038817
Alignment:
| Q |
565 |
tgtggtttctctgtatttgggaggattgtcttcagataatagttcctttataggtccatagagccttgaggataatttatgaccattgtagaaaaagcat |
664 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |||||||| |||||||| |||||||||||| |||||||| | |||||| || ||||||||||| |
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| T |
2038918 |
tgtggtttctctgtatttaggaggattgtcttctgataatagatcctttattggtccatagagctttgaggatgaccaatgacctgtggagaaaaagcat |
2038819 |
T |
|
| Q |
665 |
gc |
666 |
Q |
| |
|
|| |
|
|
| T |
2038818 |
gc |
2038817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 552 - 633
Target Start/End: Complemental strand, 2048174 - 2048093
Alignment:
| Q |
552 |
catagtctccaattgtggtttctctgtatttgggaggattgtcttcagataatagttcctttataggtccatagagccttga |
633 |
Q |
| |
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|||||||| ||| |||||||||||||||||| |||||||||||||| ||||||||||| || ||||||||||||||| |||| |
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| T |
2048174 |
catagtctgcaactgtggtttctctgtatttaggaggattgtcttctgataatagttctttcataggtccatagagctttga |
2048093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 569 - 627
Target Start/End: Complemental strand, 2059112 - 2059054
Alignment:
| Q |
569 |
gtttctctgtatttgggaggattgtcttcagataatagttcctttataggtccatagag |
627 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||| |
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| T |
2059112 |
gtttctctgtatttgggaggattgtcttctgataatagttccttcattggtccatagag |
2059054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 473 - 637
Target Start/End: Complemental strand, 2056004 - 2055840
Alignment:
| Q |
473 |
ccacattgcttagttcaaattttgtaatgtgaaagaacagaagtacaacctagtctttttgctgctggag-agtagactgcatagtctccaattgtggtt |
571 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||| ||||||||| | ||| || ||||||| | || ||||| || |||| || ||| || ||| |
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| T |
2056004 |
ccacattgctcagttcaaattttgtaatgttcaagtgcagaagtaccatctactccttttgct-cgaaagtagtaggctacataatcagcaacagtagtt |
2055906 |
T |
|
| Q |
572 |
tctctgtatttgggaggattgtcttcagataatagttcctttataggtccatagagccttgaggat |
637 |
Q |
| |
|
||| ||||||| |||||||||||||| ||||| |||||||| || |||||||||||| |||||||| |
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| T |
2055905 |
tctttgtatttaggaggattgtcttctgataacagttccttcattggtccatagagctttgaggat |
2055840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 570 - 621
Target Start/End: Original strand, 28782875 - 28782926
Alignment:
| Q |
570 |
tttctctgtatttgggaggattgtcttcagataatagttcctttataggtcc |
621 |
Q |
| |
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||||| |||||||||||||||||||||| ||||| | ||| ||||||||||| |
|
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| T |
28782875 |
tttctttgtatttgggaggattgtcttctgataaaaattcttttataggtcc |
28782926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 566 - 624
Target Start/End: Original strand, 28734918 - 28734976
Alignment:
| Q |
566 |
gtggtttctctgtatttgggaggattgtcttcagataatagttcctttataggtccata |
624 |
Q |
| |
|
||||||||||| ||| ||||||| |||||||| ||||||| ||| ||||||||||||| |
|
|
| T |
28734918 |
gtggtttctctatatctgggagggttgtcttctgataataattctgttataggtccata |
28734976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 566 - 628
Target Start/End: Original strand, 28742051 - 28742113
Alignment:
| Q |
566 |
gtggtttctctgtatttgggaggattgtcttcagataatagttcctttataggtccatagagc |
628 |
Q |
| |
|
||||||||||| ||| | ||||| |||||||| ||||| | ||| |||||||||||||||||| |
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| T |
28742051 |
gtggtttctctatatcttggagggttgtcttctgataaaatttcttttataggtccatagagc |
28742113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 569 - 612
Target Start/End: Original strand, 16441760 - 16441803
Alignment:
| Q |
569 |
gtttctctgtatttgggaggattgtcttcagataatagttcctt |
612 |
Q |
| |
|
|||||||| ||||| | ||||||||||||||||||||||||||| |
|
|
| T |
16441760 |
gtttctctatattttgcaggattgtcttcagataatagttcctt |
16441803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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