View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17150_high_5 (Length: 361)

Name: NF17150_high_5
Description: NF17150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17150_high_5
NF17150_high_5
[»] chr6 (20 HSPs)
chr6 (8-330)||(2983418-2983744)
chr6 (7-283)||(2935150-2935429)
chr6 (3-284)||(2974554-2974828)
chr6 (40-354)||(2965111-2965434)
chr6 (7-284)||(2929860-2930138)
chr6 (3-250)||(2996658-2996904)
chr6 (8-299)||(2938012-2938286)
chr6 (17-165)||(2927721-2927869)
chr6 (100-284)||(2954726-2954911)
chr6 (145-354)||(2986421-2986645)
chr6 (33-190)||(2658311-2658474)
chr6 (7-148)||(3003174-3003311)
chr6 (219-345)||(2927882-2928013)
chr6 (3-148)||(2952483-2952624)
chr6 (207-332)||(2658141-2658270)
chr6 (157-354)||(2952657-2952868)
chr6 (157-354)||(3002927-3003141)
chr6 (284-336)||(2974847-2974899)
chr6 (296-354)||(2954942-2955000)
chr6 (284-334)||(2935449-2935499)
[»] chr7 (1 HSPs)
chr7 (7-279)||(3339576-3339850)
[»] scaffold0024 (2 HSPs)
scaffold0024 (3-263)||(34513-34773)
scaffold0024 (206-284)||(43599-43680)
[»] chr3 (3 HSPs)
chr3 (8-147)||(49618963-49619102)
chr3 (9-286)||(49613989-49614269)
chr3 (167-284)||(49619136-49619249)


Alignment Details
Target: chr6 (Bit Score: 183; Significance: 6e-99; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 8 - 330
Target Start/End: Original strand, 2983418 - 2983744
Alignment:
Q  8 aatccttggcataagttgaaggctgctctaaggcgtgattattgcaatactccttggcacactgctgcttccattgctggaatcttactgcttgttctca 107  Q
    |||||| || |||||||||||||  |||| |||||||||||| |||||||||||||| | | |||||||||| |||||||| ||||||| ||||||||||    
T  2983418 aatcctaggaataagttgaaggccactctcaggcgtgattatggcaatactccttggaaaattgctgcttccgttgctggagtcttactacttgttctca 2983517  T
Q  108 ctataattcaaacagtttgttctgtcttgcaagtagtacaagcctcctagtgatttctttcattgttgagttcataattattgctattagtattatctac 207  Q
    |||||||||||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||   |||||| ||    
T  2983518 ctataattcaaacagtttgttctgtcttgcaaatagtacaagcatcctagtcatttctttcattgttgagttcataattattgttattctcattatc-ac 2983616  T
Q  208 caatgtacctcgtttgtttcaatggtttcat--tattttgtgtgttgt---attagattgaaattgtactttcatataaataaagcaacttgatcatgtt 302  Q
    | |||||| | ||||||||||||||||||||  ||||| |||||||||    |||||||||||||||| |||||||||||||||||||||||||||||||    
T  2983617 ccatgtacgttgtttgtttcaatggtttcattatatttcgtgtgttgtgtacttagattgaaattgtaatttcatataaataaagcaacttgatcatgtt 2983716  T
Q  303 gtattgttgtcgaacaaaatgggtctga 330  Q
    ||||||||||  |||||||| |||||||    
T  2983717 gtattgttgttaaacaaaattggtctga 2983744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 7 - 283
Target Start/End: Original strand, 2935150 - 2935429
Alignment:
Q  7 gaatccttggcataagttgaaggctgctctaaggcgtgattattgcaatactccttggcacactgctgcttccattgctggaatcttactgcttgttctc 106  Q
    ||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||| |||||    
T  2935150 gaatccttggcataagttgaaggctactctcaggcgtgattattgcaaaactccttggcaaactgctgcttccattgctggaatcttactactttttctc 2935249  T
Q  107 actataattcaaacagtttgttctgtcttgcaagtagt---acaagcctcctagtgatttctttcattgttgagttcataattattgctattagtattat 203  Q
    ||| || ||||| |||||||||||||||||||||| ||   ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  2935250 actttacttcaatcagtttgttctgtcttgcaagttgtacaacaagcctcctagtgatttctttcattgttgagttcataattatttctattagtattat 2935349  T
Q  204 ctaccaatgtacctcgtttgtttcaatggtttcattat-tttgtgtgttgtattagattgaaattgtactttcatataaat 283  Q
     |  |||||||| | ||||||||||||||||||||||| ||| ||||||| ||||||||||||||||| ||||||||||||    
T  2935350 -tttcaatgtacgttgtttgtttcaatggtttcattatctttttgtgttgcattagattgaaattgtaatttcatataaat 2935429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 3 - 284
Target Start/End: Original strand, 2974554 - 2974828
Alignment:
Q  3 gtaggaatccttggcataagttgaaggctgctctaaggcgtgattattgcaatactccttggcacactgctgcttccattgctggaatcttactgcttgt 102  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |||||    
T  2974554 gtaggaatccttggcataggttgaaggctgctctaaggcgtgattattgcaatactccttggcacactgctgcttccattgctggaatttttctacttgt 2974653  T
Q  103 tctcactataattcaaacagtttgttctgtcttgcaagtagtacaagcctcctagtgatttctttcattgttgagttcataattattgctattagtatta 202  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||   |||| |||      
T  2974654 tctcactataattcaaagagtttgttctgtcttgcaagtagtacaagcatcctagtgatttctttcattgttgagttcataattattttcattattat-- 2974751  T
Q  203 tctaccaatgtacctcgtttgtttcaatggtttcattat-tttgtgtgttgtattagattgaaattgtactttcatataaata 284  Q
         |||||||| | |||||||||||| |||||||||| ||| ||||||| |||||||||||||| || |||||||||||||    
T  2974752 -----caatgtacgttgtttgtttcaat-gtttcattatctttttgtgttgcattagattgaaattataatttcatataaata 2974828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 40 - 354
Target Start/End: Original strand, 2965111 - 2965434
Alignment:
Q  40 gcgtgattattgcaatactccttggcacactgctgcttccattgctggaatcttactgcttgttctcactataattcaaacagtttgttctgtcttgcaa 139  Q
    ||||||||| |||| ||||||||||||  ||||||||||| |||||||||||||||| |||||||||||| ||||||||||||||||||||    |||||    
T  2965111 gcgtgattactgcagtactccttggcaagctgctgcttcctttgctggaatcttactacttgttctcactttaattcaaacagtttgttct----tgcaa 2965206  T
Q  140 gtagtacaa---------gcctcctagtgatttctttcattgttgagttcataattattgctattagtattatctaccaatgtacctcgtttgtttcaat 230  Q
    |||||||||         || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||    
T  2965207 gtagtacaacaacctaatgcttcctagtgatttctttcattgttgagttcataattattgctattagtattatc-accaatgtacgttgtttgtttcaat 2965305  T
Q  231 ggtttcattat--tttgtgtgttgtat---tagattgaaattgtactttcatataaataaagcaacttgatcatgttgtattgttgtcgaacaaaatggg 325  Q
    |||||||||||  |||||||||||| |   ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||    
T  2965306 ggtttcattatcttttgtgtgttgtgtccttagattgaaattgtaatttcatataaataaagcaacttgatcatgttgtattgttgttgaacaaaattgg 2965405  T
Q  326 tctgatagtgtggatggcaacagctaggg 354  Q
    ||||||||||| | |||||| | ||||||    
T  2965406 tctgatagtgttgttggcaaaatctaggg 2965434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 7 - 284
Target Start/End: Original strand, 2929860 - 2930138
Alignment:
Q  7 gaatccttggcataagttgaaggctgctctaaggcgtgattattgcaatactccttggcacactgctgcttccattgctggaatcttactgcttgttctc 106  Q
    |||||||||||||| |||||||||| |||| |||||||||||||| | |||||||||||| ||||||||||||||||||||| ||||||| ||| |||||    
T  2929860 gaatccttggcataggttgaaggctactctcaggcgtgattattgaagtactccttggcaaactgctgcttccattgctggattcttactactttttctc 2929959  T
Q  107 actataattcaaacagtttgttctgtcttgcaagtagtacaagcctcctag--tgatttctttcattgttgagttcataattattgctattagtattatc 204  Q
    ||| || ||||| |||||||||||||||||||||| |||||||||||||||  |||||||||| |||||||||||||||||||||| ||||  |||||||    
T  2929960 actttacttcaatcagtttgttctgtcttgcaagttgtacaagcctcctagcttgatttcttttattgttgagttcataattattgttattcttattatc 2930059  T
Q  205 taccaatgtacctcgtttgtttcaatggtttcattattttgtgtgttgtattagattgaaattgtactttcatataaata 284  Q
     |||||||||| | ||||||||||||||||||||||||||||||||||||||||||  |||||||| |||||||||||||    
T  2930060 -accaatgtacgttgtttgtttcaatggtttcattattttgtgtgttgtattagatcaaaattgtaatttcatataaata 2930138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 3 - 250
Target Start/End: Complemental strand, 2996904 - 2996658
Alignment:
Q  3 gtaggaatccttggcataagttgaaggctgctctaaggcgtgattattgcaatactccttggcacactgctgcttccattgctggaatcttactgcttgt 102  Q
    ||||||||||||||||||||||||||||| |||| |||||||||||| |||| |||||||||||  ||||||||||| ||||||||||  |||| |||||    
T  2996904 gtaggaatccttggcataagttgaaggctactctcaggcgtgattatggcaagactccttggcaagctgctgcttcctttgctggaattgtactacttgt 2996805  T
Q  103 tctcactataattcaaacagtttgttctgtcttgcaagtagtacaagcctcctagtgatttctttcattgttgagttcataattattgctattagtatta 202  Q
    ||||||| | |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2996804 tctcacttttattcaatcagtttgttctgtcttgcaagttgtacaagcctcctagtgatttctttcattgttgagttcataattattgctattagtatta 2996705  T
Q  203 tctaccaatgtacctcgtttgtttcaatggtttcattattttgtgtgt 250  Q
    || |||||||||  | ||||||||||||||||||||||||||| ||||    
T  2996704 tc-accaatgtaagttgtttgtttcaatggtttcattattttgggtgt 2996658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 8 - 299
Target Start/End: Original strand, 2938012 - 2938286
Alignment:
Q  8 aatccttggcataagttgaaggctgctctaaggcgtgattattgcaatactccttggcacactgctgcttccattgctggaatcttactgcttgttctca 107  Q
    |||||||||||||||||||||||| |||| |||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||| ||| ||||||    
T  2938012 aatccttggcataagttgaaggctactctgaggcgtgattatggcaaaactccttggcaaactgctgcttccattgctggaatcttactacttattctca 2938111  T
Q  108 ctataattcaaacagtttgttctgtcttgcaagtagtacaagcctcctagtgatttctttcattgttgagttcataattattgctattagtattatctac 207  Q
    || || ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |                   
T  2938112 ctttacttcaatcagtttgttctgtcttgcaagttgtacaagcctcctagtgatttctttcattgttgagttcataattattgtt--------------- 2938196  T
Q  208 caatgtacctcgtttgtttcaatggtttcattattttgtgtgttgtattagattgaaattgtactttcatataaataaagcaacttgatcat 299  Q
     ||||||| | |||||||||||| |||||||||||||||||||||| |||||| |||| |||| ||| ||||||||||| ||||||||||||    
T  2938197 -aatgtacgttgtttgtttcaat-gtttcattattttgtgtgttgtgttagatcgaaaatgtaatttgatataaataaaacaacttgatcat 2938286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 17 - 165
Target Start/End: Original strand, 2927721 - 2927869
Alignment:
Q  17 cataagttgaaggctgctctaaggcgtgattattgcaatactccttggcacactgctgcttccattgctggaatcttactgcttgttctcactataattc 116  Q
    ||||||||||||||| |||| ||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||| |||||||||||| || |||    
T  2927721 cataagttgaaggctactctcaggcgtgattattgcaaaactccttggcaaactgctgcttccattgcgggaatcttactacttgttctcactttacttc 2927820  T
Q  117 aaacagtttgttctgtcttgcaagtagtacaagcctcctagtgatttct 165  Q
    || |||||||||||||||||||||| |||||||||||||||||||||||    
T  2927821 aatcagtttgttctgtcttgcaagttgtacaagcctcctagtgatttct 2927869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 100 - 284
Target Start/End: Original strand, 2954726 - 2954911
Alignment:
Q  100 tgttctcactataattcaaacagtttgttctgtcttgcaagtagtacaagcctcctagtgatttctttcattgttgagttcataattattgctattagta 199  Q
    |||| ||||| || ||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  2954726 tgttatcactttacttcaatcaatttgttctgtcttgcaagtagtacaagcctcctagtgatttctttcaatgttgagttcat-attattgctattagta 2954824  T
Q  200 ttatctaccaatgtacctcgtttgtttcaatggtttcattattttgtgtgttgt---attagattgaaattgtactttcatataaata 284  Q
    ||||| ||||||||| || ||||||||| |||||||||||||||||||||||||    |||||| || |||||| |||||||||||||    
T  2954825 ttatc-accaatgtaacttgtttgtttctatggtttcattattttgtgtgttgtgtacttagatcgatattgtaatttcatataaata 2954911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 145 - 354
Target Start/End: Original strand, 2986421 - 2986645
Alignment:
Q  145 acaagcctcctagtgatttctttcattgttgagttcataattattgctattagta----------------ttatctaccaatgtacctcgtttgtttca 228  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||                ||||| ||||| |||| | ||||||||||    
T  2986421 acaagcctcctagtgatttctttcattgttgagttcataattattgttattattaattattattattattattatc-accaacgtacattgtttgtttca 2986519  T
Q  229 atggtttcattattttgtgtgttgtattagattgaaattgtactttcatataaataaagcaacttgatcatgttgtattgttgtcgaacaaaatgggtct 328  Q
    |||||||||||| |||||||||| | |||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  2986520 atggtttcattagtttgtgtgttttgttagatcgaaattgtaatttcatataaataaatcaacttgatcatgttgtattgttgttgaacaaaatgggtct 2986619  T
Q  329 gatagtgtggatggcaacagctaggg 354  Q
    |||||||||| |||||| | ||||||    
T  2986620 gatagtgtggttggcaaaatctaggg 2986645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 33 - 190
Target Start/End: Complemental strand, 2658474 - 2658311
Alignment:
Q  33 ctctaaggcgtgattattgcaatactccttggcacactgctgcttccattgctggaatcttactgcttgttctcactataattcaaacagtttgttctgt 132  Q
    |||| |||||||||||||||| |||||||||| |  ||| ||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  2658474 ctctgaggcgtgattattgcagtactccttggaaagctggtgcttcctttgctggaatcttactacttattctcactataattcaaacagtttgttctgt 2658375  T
Q  133 cttgcaagtagtacaa------gcctcctagtgatttctttcattgttgagttcataattattg 190  Q
    ||| ||||||||||||      | ||||||||||||||||||||||||  ||||||||||||||    
T  2658374 ctttcaagtagtacaacctaatggctcctagtgatttctttcattgttcggttcataattattg 2658311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 7 - 148
Target Start/End: Complemental strand, 3003311 - 3003174
Alignment:
Q  7 gaatccttggcataagttgaaggctgctctaaggcgtgattattgcaatactccttggcacactgctgcttccattgctggaatcttactgcttgttctc 106  Q
    |||||| |||||||||||||||||| |||| ||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||| |||| ||||    
T  3003311 gaatccatggcataagttgaaggctactctcaggcgtgattattgcaaaactccctggcaaactgctgcttccattgctggaatcttactccttgctctc 3003212  T
Q  107 actataattcaaacagtttgttctgtcttgcaagtagtacaa 148  Q
    ||| || ||||||||||||||    |||||||||||||||||    
T  3003211 actttacttcaaacagtttgt----tcttgcaagtagtacaa 3003174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 219 - 345
Target Start/End: Original strand, 2927882 - 2928013
Alignment:
Q  219 gtttgtttcaatggtttcattat--tttgtgtgttgtat---tagattgaaattgtactttcatataaataaagcaacttgatcatgttgtattgttgtc 313  Q
    ||||||| |||||||||||||||  |||||||||||| |   |||||||||||| || ||||||||||||||| |||||||||||||||||||||||||     
T  2927882 gtttgttccaatggtttcattatcttttgtgtgttgtgtacttagattgaaattataatttcatataaataaatcaacttgatcatgttgtattgttgtt 2927981  T
Q  314 gaacaaaatgggtctgatagtgtggatggcaa 345  Q
    |||||||||||||||||||| |||| ||||||    
T  2927982 gaacaaaatgggtctgatagcgtggttggcaa 2928013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 3 - 148
Target Start/End: Original strand, 2952483 - 2952624
Alignment:
Q  3 gtaggaatccttggcataagttgaaggctgctctaaggcgtgattattgcaatactccttggcacactgctgcttccattgctggaatcttactgcttgt 102  Q
    |||| ||||||||| |||||||||| ||  |||| |||||||||||| |||| ||||||||||| |||||||||||||||||||||||| |||| ||||     
T  2952483 gtagtaatccttggaataagttgaaagccactctgaggcgtgattatggcaaaactccttggcaaactgctgcttccattgctggaatcgtactccttgc 2952582  T
Q  103 tctcactataattcaaacagtttgttctgtcttgcaagtagtacaa 148  Q
    ||||||| || ||||||||||||||    |||||||||||||||||    
T  2952583 tctcactttacttcaaacagtttgt----tcttgcaagtagtacaa 2952624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 207 - 332
Target Start/End: Complemental strand, 2658270 - 2658141
Alignment:
Q  207 ccaatgtacctcgtttgtttcaatggtttcattat--tttgtgtgttgtat---tagattgaaattgtactttcatataaataaagcaacttgatcatgt 301  Q
    ||||||||| | ||||||||||||| |||||||||  |||||||||||| |   || |||||||||||| ||||||||||||||||||||||||||||||    
T  2658270 ccaatgtacgttgtttgtttcaatg-tttcattatcttttgtgtgttgtgtacttatattgaaattgtaatttcatataaataaagcaacttgatcatgt 2658172  T
Q  302 tgtattgttgtcgaacaaaatgggtctgata 332  Q
    | ||||||||| | ||||||||||| |||||    
T  2658171 tctattgttgttgcacaaaatgggtttgata 2658141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 157 - 354
Target Start/End: Original strand, 2952657 - 2952868
Alignment:
Q  157 gtgatttctttcattgttgagttcataattattgctattagtattatctaccaatgtacctcgtttgtttcaatggtttcattattttgt--gtgttgta 254  Q
    |||||||||||||||||||||||||||||||||   |||| |||||||    ||||||| | |||||||||||||||||||||| | | |  |||||| |    
T  2952657 gtgatttctttcattgttgagttcataattatt---attattattatc----aatgtacgttgtttgtttcaatggtttcattaatctctttgtgttgca 2952749  T
Q  255 ttagattgaaattgtactttcatataaat-------------------aaagcaacttgatcatgttgtattgttgtcgaacaaaatgggtctgatagtg 335  Q
    |||||||||||||||| ||||||||||||                   ||||||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  2952750 ttagattgaaattgtaatttcatataaatgggtgttctgctaaataaaaaagcaacttgatcatgttgtattgttgttgaacaaaattggtctgatagtg 2952849  T
Q  336 tggatggcaacagctaggg 354  Q
    | | |||||| | ||||||    
T  2952850 ttgttggcaaaatctaggg 2952868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 157 - 354
Target Start/End: Complemental strand, 3003141 - 3002927
Alignment:
Q  157 gtgatttctttcattgttgagttcataattattgctattagtattatctaccaatgtacctcgtttgtttcaatg-gtttcattat-tttgtgtgttgta 254  Q
    ||||| |||||||||||| ||||||||||||||   |||| ||||||| | |||||||| | ||||||||||||  |||||||||| ||| ||||||| |    
T  3003141 gtgatgtctttcattgttaagttcataattatt---attattattatc-atcaatgtacgtagtttgtttcaatatgtttcattatctttttgtgttgca 3003046  T
Q  255 ttagattgaaattgtactttcatataaataa-------------------agcaacttgatcatgttgtattgttgtcgaacaaaatgggtctgatagtg 335  Q
    | |||||||||||||| |||||||||||||                    ||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  3003045 tcagattgaaattgtaatttcatataaataggtgttctgctgaataaaagagcaacttgatcatgttgtattgttgttgaacaaaatgggtctgatagtg 3002946  T
Q  336 tggatggcaacagctaggg 354  Q
    ||| |||||| | ||||||    
T  3002945 tggttggcaaaatctaggg 3002927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 284 - 336
Target Start/End: Original strand, 2974847 - 2974899
Alignment:
Q  284 aaagcaacttgatcatgttgtattgttgtcgaacaaaatgggtctgatagtgt 336  Q
    ||||||||||||||||||||||||||||| ||||||||| || ||||||||||    
T  2974847 aaagcaacttgatcatgttgtattgttgttgaacaaaattggcctgatagtgt 2974899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 296 - 354
Target Start/End: Original strand, 2954942 - 2955000
Alignment:
Q  296 tcatgttgtattgttgtcgaacaaaatgggtctgatagtgtggatggcaacagctaggg 354  Q
    ||||||| ||||||||| ||||||||||||||||||||||||| |||||| | ||||||    
T  2954942 tcatgttttattgttgttgaacaaaatgggtctgatagtgtggttggcaaaatctaggg 2955000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 284 - 334
Target Start/End: Original strand, 2935449 - 2935499
Alignment:
Q  284 aaagcaacttgatcatgttgtattgttgtcgaacaaaatgggtctgatagt 334  Q
    ||||||  ||||||||||||||||||||| ||||||||| |||||||||||    
T  2935449 aaagcatattgatcatgttgtattgttgttgaacaaaattggtctgatagt 2935499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 147; Significance: 2e-77; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 7 - 279
Target Start/End: Original strand, 3339576 - 3339850
Alignment:
Q  7 gaatccttggcataagttgaaggctgctctaaggcgtgattattgcaatactccttggcacactgctgcttccattgctggaatcttactgcttgttctc 106  Q
    |||||||||||||| |||||||||  |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||  |||| |||||||||    
T  3339576 gaatccttggcataggttgaaggccactctcaggcgtgattattgcaatactccttggcaaactgctgcttccattgctggaattgtactacttgttctc 3339675  T
Q  107 actataattcaaacagtttgttctgtcttgcaagtagtacaagcctcctagtgatttctttcattgttgagt---tcataattattgctattagtattat 203  Q
    ||| || ||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||   |||||||||||||| ||||||||||    
T  3339676 actttacttcaatcagtttgttctgtcttgcaagtagtacaggcctcctagtgatttctttctttgttgagttcatcataattattgctcttagtattat 3339775  T
Q  204 ctaccaatgtacctcgtttgtttcaatggtttcattat-tttgtgtgttgtattagattgaaattgtactttcatat 279  Q
     || |||||||| | ||||||||| || |||||||||| ||| ||||||| ||||||| ||||||||| ||| ||||    
T  3339776 -tatcaatgtacgttgtttgtttccat-gtttcattatctttttgtgttgcattagatcgaaattgtaattttatat 3339850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 144; Significance: 1e-75; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 3 - 263
Target Start/End: Complemental strand, 34773 - 34513
Alignment:
Q  3 gtaggaatccttggcataagttgaaggctgctctaaggcgtgattattgcaatactccttggcacactgctgcttccattgctggaatcttactgcttgt 102  Q
    |||| ||||||||| ||| |||||||||| |||| |||||||||||| |||| ||||||||||| |||||||||||| |||||||||| ||||| |||||    
T  34773 gtagtaatccttggaataggttgaaggcttctctcaggcgtgattatggcaaaactccttggcaaactgctgcttccgttgctggaattttactacttgt 34674  T
Q  103 tctcactataattcaaacagtttgttctgtcttgcaagtagtacaagcctcctagtgatttctttcattgttgagttcataattattgctattagtatta 202  Q
    ||||||| |  ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34673 tctcactttgcttcaatcagtttgttctgtcttgcaagtagtacaagcctcctagtgatttctttcattgttgagttcataattattgctattagtatta 34574  T
Q  203 tctaccaatgtacctcgtttgtttcaatggtttcatta--ttttgtgtgttgtattagattga 263  Q
    | || |||| |||   |||||||||||| |||||||||  ||||  |||||| ||||||||||    
T  34573 t-tatcaatttacgctgtttgtttcaat-gtttcattatctttttggtgttgcattagattga 34513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 206 - 284
Target Start/End: Complemental strand, 43680 - 43599
Alignment:
Q  206 accaatgtacctcgtttgtttcaatggtttcattattttgtgtgttgt---attagattgaaattgtactttcatataaata 284  Q
    |||||||||| | |||||||||||||||||||||||||||||||||||   ||||||||||||||||| |||||||||||||    
T  43680 accaatgtacgttgtttgtttcaatggtttcattattttgtgtgttgtgtaattagattgaaattgtaatttcatataaata 43599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 80; Significance: 2e-37; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 8 - 147
Target Start/End: Original strand, 49618963 - 49619102
Alignment:
Q  8 aatccttggcataagttgaaggctgctctaaggcgtgattattgcaatactccttggcacactgctgcttccattgctggaatcttactgcttgttctca 107  Q
    ||||||||||||||  |||||||| |||| |||||||||||| ||| |||||||||||| ||||||||||||||||||||||| ||||| |||||||||     
T  49618963 aatccttggcataaactgaaggctactctcaggcgtgattatggcagtactccttggcaaactgctgcttccattgctggaattttactacttgttctct 49619062  T
Q  108 ctataattcaaacagtttgttctgtcttgcaagtagtaca 147  Q
    || || ||||| ||||||||||| |||||||||| |||||    
T  49619063 ctttacttcaatcagtttgttctatcttgcaagttgtaca 49619102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 9 - 286
Target Start/End: Original strand, 49613989 - 49614269
Alignment:
Q  9 atccttggcataagttgaaggctgctctaaggcgtgattattgcaatactccttggcacactgctgcttccattgctggaatcttactgcttgttctcac 108  Q
    ||||||||||||  ||||||||  |||| || |||||||||||||| | ||||||||| ||||||||||||||||||||||| ||||| ||| ||||| |    
T  49613989 atccttggcatagattgaaggcgactctcagacgtgattattgcaacagtccttggcaaactgctgcttccattgctggaattttactacttattctctc 49614088  T
Q  109 tataattcaaacagtttgttctgtcttgcaagtagtacaa---------gcctcctagtgatttctttcattgttgagttcataattattgctattagta 199  Q
    | || ||||| |||||||| | || |||||||| ||||||         |  || |||| | |||  |||||||||| |||||||||||||  |||| ||    
T  49614089 tttacttcaatcagtttgtgcagtgttgcaagttgtacaacaatataatgattcatagtaagttcaatcattgttgaattcataattattgtgattatta 49614188  T
Q  200 ttatctaccaatgtacctcgtttgtttcaatggtttcattattttgtgtgttgtattagattgaaattgtactttcatataaataaa 286  Q
    |||| ||||||| ||       ||||||||||||||||||||||||  ||||||| ||||||||||||| |  ||||||||||||||    
T  49614189 ttat-taccaattta-----agtgtttcaatggtttcattattttgcatgttgtactagattgaaattgcaacttcatataaataaa 49614269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 167 - 284
Target Start/End: Original strand, 49619136 - 49619249
Alignment:
Q  167 tcattgttgagttcataattattgctattagtattatctaccaatgtacctcgtttgtttcaatggtttcattattttgtgtgttgtattagattgaaat 266  Q
    |||||||||||||||| |||||||  ||||   ||||| |||||| ||| | ||||||| |||||||||||||||  ||| |||||||||||||||||||    
T  49619136 tcattgttgagttcatgattattgacatta---ttatc-accaatttacgttgtttgttccaatggtttcattatcatgtttgttgtattagattgaaat 49619231  T
Q  267 tgtactttcatataaata 284  Q
    | || | | |||||||||    
T  49619232 tctaatattatataaata 49619249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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