View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17150_high_6 (Length: 358)
Name: NF17150_high_6
Description: NF17150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17150_high_6 |
 | |
|
| [»] scaffold0011 (2 HSPs) |
| | |
|
| [»] scaffold0026 (2 HSPs) |
| | |
|
| [»] scaffold0227 (2 HSPs) |
| | |
|
| [»] scaffold0018 (1 HSPs) |
| | |
|
| [»] scaffold0063 (1 HSPs) |
| | |
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Alignment Details
Target: chr3 (Bit Score: 141; Significance: 7e-74; HSPs: 15)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 17 - 161
Target Start/End: Original strand, 54994678 - 54994822
Alignment:
| Q |
17 |
aggtattcagggattgggataaaggattggtagggagagaccaagctctcgaattcttggaggggagagaaccaagactctcgaatttcttgggattata |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54994678 |
aggtattcagggattgggataaaggattggtagggagagaccaagctctcgaattcttggaggggagagaaccaagactctcgaatttcttgggattata |
54994777 |
T |
|
| Q |
117 |
ttgtaatcttactattattttatattttgatatcagttcctatca |
161 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
54994778 |
ttgtaatcttactattagtttatattttgatatcagttcctatca |
54994822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 21 - 161
Target Start/End: Original strand, 7197789 - 7197929
Alignment:
| Q |
21 |
attcagggattgggataaaggattggtagggagagaccaagctctcgaattcttggaggggagagaaccaagactctcgaatttcttgggattatattgt |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7197789 |
attcagggattgggataaaggattggtagggagagaccaagctctcgaatacttggaggggagagaaccaagactctcgaatttcttgggattatattgt |
7197888 |
T |
|
| Q |
121 |
aatcttactattattttatattttgatatcagttcctatca |
161 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
7197889 |
aatcttactattagtttatattttgatatcagttcctatca |
7197929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 13 - 161
Target Start/End: Complemental strand, 48637686 - 48637538
Alignment:
| Q |
13 |
agagaggtattcagggattgggataaaggattggtagggagagaccaagctctcgaattcttggaggggagagaaccaagactctcgaatttcttgggat |
112 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
48637686 |
agagaggtattgagggattgggataaaggattggtagggagagaccaagctctcgaatacttggaggggagagaaccaagactctcaaatttcttgggat |
48637587 |
T |
|
| Q |
113 |
tatattgtaatcttactattattttatattttgatatcagttcctatca |
161 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
48637586 |
tatattgtaatcttactattagtttatattttgatatcagttcctatca |
48637538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 17 - 158
Target Start/End: Original strand, 592570 - 592711
Alignment:
| Q |
17 |
aggtattcagggattgggataaaggattggtagggagagaccaagctctcgaattcttggaggggagagaaccaagactctcgaatttcttgggattata |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
592570 |
aggtattcagggattgggataaaggattggtagggagagcccaagctctcgaattcttggaggggagagaaccaagaccctcgaatttcttgggattata |
592669 |
T |
|
| Q |
117 |
ttgtaatcttactattattttatattttgatatcagttccta |
158 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
592670 |
ttgtaatcttactattagtttatattttgatatcagttccta |
592711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 17 - 161
Target Start/End: Complemental strand, 45826296 - 45826152
Alignment:
| Q |
17 |
aggtattcagggattgggataaaggattggtagggagagaccaagctctcgaattcttggaggggagagaaccaagactctcgaatttcttgggattata |
116 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
45826296 |
aggtattcagggattgggataaaggataggtagggagagaccaagctctcgaattcttggaggggagagaaccaagactctctaatttcttgggattata |
45826197 |
T |
|
| Q |
117 |
ttgtaatcttactattattttatattttgatatcagttcctatca |
161 |
Q |
| |
|
||||||| ||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
45826196 |
ttgtaatattactattagtttatattttgatatcagttcctatca |
45826152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 50 - 161
Target Start/End: Original strand, 40976891 - 40977002
Alignment:
| Q |
50 |
ggagagaccaagctctcgaattcttggaggggagagaaccaagactctcgaatttcttgggattatattgtaatcttactattattttatattttgatat |
149 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
40976891 |
ggagagaccaagctctcgaattcttggaggggagagaaccaagactctcgaattttttgggattatattgtaatattactattagtttatattttgatat |
40976990 |
T |
|
| Q |
150 |
cagttcctatca |
161 |
Q |
| |
|
|||||||||||| |
|
|
| T |
40976991 |
cagttcctatca |
40977002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 21 - 133
Target Start/End: Original strand, 51274459 - 51274571
Alignment:
| Q |
21 |
attcagggattgggataaaggattggtagggagagaccaagctctcgaattcttggaggggagagaaccaagactctcgaatttcttgggattatattgt |
120 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51274459 |
attcagggattgggataaaggataggtagggagagaccaagctctcaaattcttggaggggggagaaccaagactctcgaatttcttgggattatattgt |
51274558 |
T |
|
| Q |
121 |
aatcttactatta |
133 |
Q |
| |
|
||| ||||||||| |
|
|
| T |
51274559 |
aatattactatta |
51274571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 21 - 161
Target Start/End: Complemental strand, 2386440 - 2386292
Alignment:
| Q |
21 |
attcagggattgggataaaggattggtagggagagaccaagctctcgaattcttggaggggagagaaccaagactctcgaatttcttgggattatattgt |
120 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
2386440 |
attcagggattgagataaaggataggtagggagagaccaagctctcgaattcttggaggggagagaaccgagactctcgaatttcttgggattatattgt |
2386341 |
T |
|
| Q |
121 |
a--------atcttactattattttatattttgatatcagttcctatca |
161 |
Q |
| |
|
| || ||||||||| |||||||||||||||||||| |||||| |
|
|
| T |
2386340 |
aatattagtatattactattagtttatattttgatatcagtttctatca |
2386292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 42 - 111
Target Start/End: Original strand, 8638949 - 8639018
Alignment:
| Q |
42 |
attggtagggagagaccaagctctcgaattcttggaggggagagaaccaagactctcgaatttcttggga |
111 |
Q |
| |
|
|||||| |||||||| ||||||||| |||||||||| |||||||| |||||||||||||| ||||||||| |
|
|
| T |
8638949 |
attggttgggagagaacaagctctctaattcttggaagggagagacccaagactctcgaaattcttggga |
8639018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 48 - 108
Target Start/End: Complemental strand, 16772848 - 16772790
Alignment:
| Q |
48 |
agggagagaccaagctctcgaattcttggaggggagagaaccaagactctcgaatttcttg |
108 |
Q |
| |
|
||||| |||||||||||||||||||||||| | ||||| |||||||||||||||||||||| |
|
|
| T |
16772848 |
agggaaagaccaagctctcgaattcttgga-gagagag-accaagactctcgaatttcttg |
16772790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 49 - 109
Target Start/End: Complemental strand, 49987286 - 49987228
Alignment:
| Q |
49 |
gggagagaccaagctctcgaattcttggaggggagagaaccaagactctcgaatttcttgg |
109 |
Q |
| |
|
|||||||||||| ||||| |||||||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
49987286 |
gggagagaccaaactctctaattcttgga-gggagag-accaagactctcgaatttcttgg |
49987228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 50 - 145
Target Start/End: Complemental strand, 14277226 - 14277131
Alignment:
| Q |
50 |
ggagagaccaagctctcgaattcttggaggggagagaaccaagactctcgaatttcttgggattatattgtaatcttactattattttatattttg |
145 |
Q |
| |
|
|||||||||||| ||| |||||| ||||| |||||||||||||||||| |||||| |||| | ||||||| | ||| ||||| ||| ||||||| |
|
|
| T |
14277226 |
ggagagaccaagttcttgaattcccggaggagagagaaccaagactctcaaatttcacgggaatctattgtattattaatattaatttgtattttg |
14277131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 109
Target Start/End: Original strand, 42510642 - 42510689
Alignment:
| Q |
61 |
gctctcgaattcttggaggggagagaaccaagactctcgaatttcttgg |
109 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||||||||||| ||||| |
|
|
| T |
42510642 |
gctctcgaattcttggaggg-agagacccaagactctcgaattccttgg |
42510689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 95
Target Start/End: Original strand, 48146902 - 48146948
Alignment:
| Q |
49 |
gggagagaccaagctctcgaattcttggaggggagagaaccaagact |
95 |
Q |
| |
|
|||||||||||||||||| |||| ||||| |||||||| |||||||| |
|
|
| T |
48146902 |
gggagagaccaagctctctaatttttggaagggagagacccaagact |
48146948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 104
Target Start/End: Complemental strand, 54886927 - 54886875
Alignment:
| Q |
50 |
ggagagaccaagctctcgaattcttggaggggagagaaccaagactctcgaattt |
104 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||| | |||||||||||||||||| |
|
|
| T |
54886927 |
ggagagaccaagctctcgaattcttgga-gcgagtg-accaagactctcgaattt |
54886875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 137; Significance: 2e-71; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 17 - 161
Target Start/End: Complemental strand, 18133132 - 18132988
Alignment:
| Q |
17 |
aggtattcagggattgggataaaggattggtagggagagaccaagctctcgaattcttggaggggagagaaccaagactctcgaatttcttgggattata |
116 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18133132 |
aggtattcagggattgggataaaggataggtagggagagaccaagctctcgaattcttggaggggagagaaccaagactctcgaatttcttgggattata |
18133033 |
T |
|
| Q |
117 |
ttgtaatcttactattattttatattttgatatcagttcctatca |
161 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
18133032 |
ttgtaatcttactattagtttatattttgatatcagttcctatca |
18132988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 17 - 161
Target Start/End: Original strand, 21535777 - 21535921
Alignment:
| Q |
17 |
aggtattcagggattgggataaaggattggtagggagagaccaagctctcgaattcttggaggggagagaaccaagactctcgaatttcttgggattata |
116 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21535777 |
aggtattcagggattgggataaaggataggtagggagagaccaagctctcgaattcttggaggggagagaaccaagactctcgaatttcttgggattata |
21535876 |
T |
|
| Q |
117 |
ttgtaatcttactattattttatattttgatatcagttcctatca |
161 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
21535877 |
ttgtaatcttactattagtttatattttgatatcagttcctatca |
21535921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 17 - 161
Target Start/End: Complemental strand, 18131926 - 18131782
Alignment:
| Q |
17 |
aggtattcagggattgggataaaggattggtagggagagaccaagctctcgaattcttggaggggagagaaccaagactctcgaatttcttgggattata |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18131926 |
aggtattcagggattgggataaaggattggtagggagagaccaagctctcgaatacttggaagggagagaaccaagactctcgaatttcttgggattata |
18131827 |
T |
|
| Q |
117 |
ttgtaatcttactattattttatattttgatatcagttcctatca |
161 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
18131826 |
ttgtaatcttactattagtttatattttgatatcagttcctatca |
18131782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 21 - 161
Target Start/End: Complemental strand, 21395731 - 21395591
Alignment:
| Q |
21 |
attcagggattgggataaaggattggtagggagagaccaagctctcgaattcttggaggggagagaaccaagactctcgaatttcttgggattatattgt |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| | |
|
|
| T |
21395731 |
attcagggattgggataaaggattggtagggagagaccaagctctcgaattcttggaggggagacaaccaagactcttgaatttcttgggattatattat |
21395632 |
T |
|
| Q |
121 |
aatcttactattattttatattttgatatcagttcctatca |
161 |
Q |
| |
|
||||||||| ||| |||||||||||||||||||| |||||| |
|
|
| T |
21395631 |
aatcttactgttagtttatattttgatatcagtttctatca |
21395591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 55 - 159
Target Start/End: Complemental strand, 7033443 - 7033339
Alignment:
| Q |
55 |
gaccaagctctcgaattcttggaggggagagaaccaagactctcgaatttcttgggattatattgtaatcttactattattttatattttgatatcagtt |
154 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
7033443 |
gaccaagctttcgaattcttggaggggagagaaccaagactctcgaatttcttgggattatattgtaatcttactattagtttatattttgatatcagtt |
7033344 |
T |
|
| Q |
155 |
cctat |
159 |
Q |
| |
|
||||| |
|
|
| T |
7033343 |
cctat |
7033339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 43 - 161
Target Start/End: Original strand, 4303035 - 4303153
Alignment:
| Q |
43 |
ttggtagggagagaccaagctctcgaattcttggaggggagagaaccaagactctcgaatttcttgggattatattgtaatcttactattattttatatt |
142 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||| | ||| ||||| ||| ||| |
|
|
| T |
4303035 |
ttggaagggagagaccaagctctcgaattcttggaggggagagaaccaagactctagaatttcttgggaatctattgtattattaatattaatttggatt |
4303134 |
T |
|
| Q |
143 |
ttgatatcagttcctatca |
161 |
Q |
| |
|
|||||| ||||| |||||| |
|
|
| T |
4303135 |
ttgataccagtttctatca |
4303153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 175 - 284
Target Start/End: Complemental strand, 12789535 - 12789426
Alignment:
| Q |
175 |
aattaagaagagaataatgcaatcagctacaacttacaaatttattcagttactccctccaaccgcaaagacgtaagttattcagcgatcaatgcaaaga |
274 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||||||||||| |||||||||||||| || |||||| ||| |
|
|
| T |
12789535 |
aattgagaagagaataatgcaatcagctgcaacttacaaattcattcagttacaccctccaaccgcaaatacgtaagttattcaatgagcaatgctgaga |
12789436 |
T |
|
| Q |
275 |
atacttttag |
284 |
Q |
| |
|
|||||||||| |
|
|
| T |
12789435 |
atacttttag |
12789426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 54 - 161
Target Start/End: Original strand, 16189671 - 16189780
Alignment:
| Q |
54 |
agaccaagctctcgaattcttggaggggagagaaccaagactctcgaatttcttgggattatattgtaatcttactattattttata--ttttgatatca |
151 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||| | || | ||||||| ||||||||| ||||||||| |||||| ||||||||||| |
|
|
| T |
16189671 |
agaccaagctctcgaattcttggaggggagagaaccaacactctcaatttccatgggattctattgtaatattactattaatttatatgttttgatatca |
16189770 |
T |
|
| Q |
152 |
gttcctatca |
161 |
Q |
| |
|
||| |||||| |
|
|
| T |
16189771 |
gtttctatca |
16189780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 284 - 358
Target Start/End: Complemental strand, 12788988 - 12788914
Alignment:
| Q |
284 |
gatctcactatttttctctttaaccacatccctaactttttgaacaacaatccaagtcaactcacatatggattc |
358 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||| |||| ||||||||||||||||||| || ||| ||||||||| |
|
|
| T |
12788988 |
gatctcgctatttttctcttcaaccacatcccaaactctttgaacaacaatccaagtaaaatcaagtatggattc |
12788914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 33 - 153
Target Start/End: Original strand, 27661287 - 27661407
Alignment:
| Q |
33 |
ggataaaggattggtagggagagaccaagctctcgaattcttggaggggagagaaccaagactctcgaatttcttgggattatattgtaatcttactatt |
132 |
Q |
| |
|
||||||||||||| |||| | | | ||||||| ||| |||||| ||||| ||||| || | ||||||||||||||||||| ||||||||| | |||| |
|
|
| T |
27661287 |
ggataaaggattgataggaatatatcaagctcgcgagttcttgacggggatagaacgaacattctcgaatttcttgggattctattgtaatgattatatt |
27661386 |
T |
|
| Q |
133 |
attttatattttgatatcagt |
153 |
Q |
| |
|
| || ||||||||||| |||| |
|
|
| T |
27661387 |
aattaatattttgataacagt |
27661407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 50 - 109
Target Start/End: Original strand, 14345031 - 14345088
Alignment:
| Q |
50 |
ggagagaccaagctctcgaattcttggaggggagagaaccaagactctcgaatttcttgg |
109 |
Q |
| |
|
||||||||||||||||||||||| |||| |||| || ||||||||||||||||||||||| |
|
|
| T |
14345031 |
ggagagaccaagctctcgaattcatgga-gggaaag-accaagactctcgaatttcttgg |
14345088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 137; Significance: 2e-71; HSPs: 13)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 17 - 161
Target Start/End: Original strand, 22950332 - 22950476
Alignment:
| Q |
17 |
aggtattcagggattgggataaaggattggtagggagagaccaagctctcgaattcttggaggggagagaaccaagactctcgaatttcttgggattata |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22950332 |
aggtattcagggattgggataaaggattggtagggagagaccaagctctcgaatacttggaggggagagaaccaagactctcgaatttcttgggattata |
22950431 |
T |
|
| Q |
117 |
ttgtaatcttactattattttatattttgatatcagttcctatca |
161 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
22950432 |
ttgtaatcttactattagtttatattttgatatcagttcctatca |
22950476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 21 - 161
Target Start/End: Complemental strand, 39701728 - 39701588
Alignment:
| Q |
21 |
attcagggattgggataaaggattggtagggagagaccaagctctcgaattcttggaggggagagaaccaagactctcgaatttcttgggattatattgt |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39701728 |
attcagggattgggataaaggattggtagggagagaccaagctctcgaatacttggaggggagagaaccaagactctcgaatttcttgggattatattgt |
39701629 |
T |
|
| Q |
121 |
aatcttactattattttatattttgatatcagttcctatca |
161 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
39701628 |
aatcttactattagtttatattttgatatcagttcctatca |
39701588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 17 - 161
Target Start/End: Complemental strand, 29526183 - 29526038
Alignment:
| Q |
17 |
aggtattcagggattgggat-aaaggattggtagggagagaccaagctctcgaattcttggaggggagagaaccaagactctcgaatttcttgggattat |
115 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
29526183 |
aggtattcagggattgggattaaaggattggtagggagagaccaagctctcgaattcttggaggggagagaaccaagactctcggatttcttgggattat |
29526084 |
T |
|
| Q |
116 |
attgtaatcttactattattttatattttgatatcagttcctatca |
161 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
29526083 |
attgtaatcttactattagtttatattttgatatcagttcctatca |
29526038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 21 - 162
Target Start/End: Complemental strand, 39702958 - 39702817
Alignment:
| Q |
21 |
attcagggattgggataaaggattggtagggagagaccaagctctcgaattcttggaggggagagaaccaagactctcgaatttcttgggattatattgt |
120 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39702958 |
attcagggattgggataaaggatcggtagggagagaccaagctctcgaatacttggaggggagagaaccaagactctcgaatttcttgggattatattgt |
39702859 |
T |
|
| Q |
121 |
aatcttactattattttatattttgatatcagttcctatcaa |
162 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
39702858 |
aatcttactattagtttatattttgatatcagttcctatcaa |
39702817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 17 - 162
Target Start/End: Complemental strand, 29527396 - 29527250
Alignment:
| Q |
17 |
aggtattcagggattgggataaaggattggtagggagagaccaagctctcgaattcttggagggg-agagaaccaagactctcgaatttcttgggattat |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
29527396 |
aggtattcagggattgggataaaggattggtagggagagaccaagctcttgaattcttggagggggagagaaccaagactctcgaatttcttgggattat |
29527297 |
T |
|
| Q |
116 |
attgtaatcttactattattttatattttgatatcagttcctatcaa |
162 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
29527296 |
attgtaatcttactattagtttatattttgatatctgttcctatcaa |
29527250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 25 - 162
Target Start/End: Original strand, 19934633 - 19934770
Alignment:
| Q |
25 |
agggattgggataaaggattggtagggagagaccaagctctcgaattcttggaggggagagaaccaagactctcgaatttcttgggattatattgtaatc |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
19934633 |
agggattgggataaaggattggtagggagagaccaagctctcgaatacttggaggggagagaaccaagactcttgaatttcttgggattatattgtaatc |
19934732 |
T |
|
| Q |
125 |
ttactattattttatattttgatatcagttcctatcaa |
162 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
19934733 |
ttactattagtttatattttgatatcagttcctatcaa |
19934770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 51 - 161
Target Start/End: Original strand, 19139374 - 19139484
Alignment:
| Q |
51 |
gagagaccaagctctcgaattcttggaggggagagaaccaagactctcgaatttcttgggattatattgtaatcttactattattttatattttgatatc |
150 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
19139374 |
gagaaaccaagctctctaattcttggaggggagagaaccaagactctcgaatttcttgggattatattgtaatcttactattagtttaaattttgatatc |
19139473 |
T |
|
| Q |
151 |
agttcctatca |
161 |
Q |
| |
|
|||| |||||| |
|
|
| T |
19139474 |
agtttctatca |
19139484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 20 - 162
Target Start/End: Complemental strand, 41051069 - 41050924
Alignment:
| Q |
20 |
tattcagggattgggataaaggattggtagggagagaccaagctctcgaattcttggaggggagagaaccaagactctc-gaatttcttgggattatatt |
118 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
41051069 |
tattcagggattgggataaaggataggtagggagagaccaagctcttgaattcttggaggggacagaaccaagactctcggaatttcttgggattctatt |
41050970 |
T |
|
| Q |
119 |
gtaat-cttactattattttat-attttgatatcagttcctatcaa |
162 |
Q |
| |
|
|| || ||||||| | ||||| ||||||||||||||| ||||||| |
|
|
| T |
41050969 |
gtgataattactataaatttataattttgatatcagtttctatcaa |
41050924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 43 - 161
Target Start/End: Complemental strand, 35144618 - 35144499
Alignment:
| Q |
43 |
ttggtagggagagaccaagctctcgaattcttggaggggagagaaccaagactctcgaatttcttgggatta-tattgtaatcttactattattttatat |
141 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||| | ||| ||||| ||| || |
|
|
| T |
35144618 |
ttggaagggagagaccaaggtctcgaattcttggaggggagagaaccaagactctcgaatttcttaggaaaactattgtattattaatattaatttgaat |
35144519 |
T |
|
| Q |
142 |
tttgatatcagttcctatca |
161 |
Q |
| |
|
||||||||||||| |||||| |
|
|
| T |
35144518 |
tttgatatcagtttctatca |
35144499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 180 - 236
Target Start/End: Complemental strand, 19908927 - 19908871
Alignment:
| Q |
180 |
agaagagaataatgcaatcagctacaacttacaaatttattcagttactccctccaa |
236 |
Q |
| |
|
|||| |||||||||||||||||| ||||||| |||||||||||||||| ||||||| |
|
|
| T |
19908927 |
agaatagaataatgcaatcagctgcaacttagaaatttattcagttacatcctccaa |
19908871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 43 - 111
Target Start/End: Original strand, 37473626 - 37473693
Alignment:
| Q |
43 |
ttggtagggagagaccaagctctcgaattcttggaggggagagaaccaagactctcgaatttcttggga |
111 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| ||||||| ||| |||||||||| |||| |||| |
|
|
| T |
37473626 |
ttggaagggagagaccaagctctcgaattcttgga-cggagagacccaggactctcgaagttctgggga |
37473693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 99
Target Start/End: Complemental strand, 38563251 - 38563185
Alignment:
| Q |
33 |
ggataaaggattggtagggagagaccaagctctcgaattcttggaggggagagaaccaagactctcg |
99 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||| |||||||||| ||||||| || ||||||||| |
|
|
| T |
38563251 |
ggataaaggattggtagggattgaccaagcgctctaattcttggaaaggagagacccgagactctcg |
38563185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 48 - 109
Target Start/End: Original strand, 24150273 - 24150333
Alignment:
| Q |
48 |
agggagagaccaagctctcgaattcttggaggggagagaaccaagactctcgaatttcttgg |
109 |
Q |
| |
|
||||||||||||||||||| |||||||||| ||||| | ||||||||| || |||||||||| |
|
|
| T |
24150273 |
agggagagaccaagctctctaattcttggaagggag-ggaccaagactgtcaaatttcttgg |
24150333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 137; Significance: 2e-71; HSPs: 17)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 17 - 161
Target Start/End: Complemental strand, 8089863 - 8089719
Alignment:
| Q |
17 |
aggtattcagggattgggataaaggattggtagggagagaccaagctctcgaattcttggaggggagagaaccaagactctcgaatttcttgggattata |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8089863 |
aggtattcagggattgggataaaggattggtagggagagaccaagctctcgaatacttggaggggagagaaccaagactctcgaatttcttgggattata |
8089764 |
T |
|
| Q |
117 |
ttgtaatcttactattattttatattttgatatcagttcctatca |
161 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
8089763 |
ttgtaatcttactattagtttatattttgatatcagttcctatca |
8089719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 17 - 162
Target Start/End: Original strand, 10582769 - 10582914
Alignment:
| Q |
17 |
aggtattcagggattgggataaaggattggtagggagagaccaagctctcgaattcttggaggggagagaaccaagactctcgaatttcttgggattata |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
10582769 |
aggtattcagggattgggataaaggattggtagggagagaccaagctctcgaatacttggaggggagagaaccaagactctcgaatttcttgggattgta |
10582868 |
T |
|
| Q |
117 |
ttgtaatcttactattattttatattttgatatcagttcctatcaa |
162 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
10582869 |
ttgtaatcttactattagtttatattttgatatcagttcctatcaa |
10582914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 17 - 162
Target Start/End: Original strand, 10583975 - 10584120
Alignment:
| Q |
17 |
aggtattcagggattgggataaaggattggtagggagagaccaagctctcgaattcttggaggggagagaaccaagactctcgaatttcttgggattata |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
10583975 |
aggtattcagggattgggataaaggattggtagggagagaccaagctctcgaatacttggaggggagagaaccaagactctcgaatttcttgggattgta |
10584074 |
T |
|
| Q |
117 |
ttgtaatcttactattattttatattttgatatcagttcctatcaa |
162 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
10584075 |
ttgtaatcttactattagtttatattttgatatcagttcctatcaa |
10584120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 17 - 162
Target Start/End: Original strand, 49122197 - 49122342
Alignment:
| Q |
17 |
aggtattcagggattgggataaaggattggtagggagagaccaagctctcgaattcttggaggggagagaaccaagactctcgaatttcttgggattata |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49122197 |
aggtattcagggattgggataaaggattggtagggagagaccaagctctcgaatacttggaggggagagaaccaagactctcgaatttcttgggattata |
49122296 |
T |
|
| Q |
117 |
ttgtaatcttactattattttatattttgatatcagttcctatcaa |
162 |
Q |
| |
|
||||||||||||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
49122297 |
ttgtaatcttactattagtttatattttcatatcagttcctatcaa |
49122342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 17 - 167
Target Start/End: Complemental strand, 8788677 - 8788527
Alignment:
| Q |
17 |
aggtattcagggattgggataaaggattggtagggagagaccaagctctcgaattcttggaggggagagaaccaagactctcgaatttcttgggattata |
116 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
8788677 |
aggtattcagggattgggataaaggataggtagggagagaccaagctttcgaattcttggaggggagagaaccaagactctctaatttcttgggattata |
8788578 |
T |
|
| Q |
117 |
ttgtaatcttactattattttatattttgatatcagttcctatcaatgtca |
167 |
Q |
| |
|
||||||| ||||||||| |||||||||||||||||||||||||||| |||| |
|
|
| T |
8788577 |
ttgtaatattactattagtttatattttgatatcagttcctatcaaagtca |
8788527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 17 - 162
Target Start/End: Original strand, 49123331 - 49123476
Alignment:
| Q |
17 |
aggtattcagggattgggataaaggattggtagggagagaccaagctctcgaattcttggaggggagagaaccaagactctcgaatttcttgggattata |
116 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49123331 |
aggtattcagggattggggtaaaggattggtagggagagattgggcactcgaatacttggaggggagagaaccaagactctcgaatttcttgggattata |
49123430 |
T |
|
| Q |
117 |
ttgtaatcttactattattttatattttgatatcagttcctatcaa |
162 |
Q |
| |
|
|| |||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
49123431 |
ttctaatcttactattagtttatattttgatatcagttcctatcaa |
49123476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 17 - 133
Target Start/End: Original strand, 49122008 - 49122124
Alignment:
| Q |
17 |
aggtattcagggattgggataaaggattggtagggagagaccaagctctcgaattcttggaggggagagaaccaagactctcgaatttcttgggattata |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
49122008 |
aggtattcagggattgggataaaggattggtagggagagatcaagctctcgaatacttggaggggagagaaccaagactctcaaatttcttgggattata |
49122107 |
T |
|
| Q |
117 |
ttgtaatcttactatta |
133 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
49122108 |
ttgtaatcttactatta |
49122124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 21 - 132
Target Start/End: Complemental strand, 23541112 - 23540999
Alignment:
| Q |
21 |
attcagggattgggataaaggattggtagggagagaccaagctctcgaa--ttcttggaggggagagaaccaagactctcgaatttcttgggattatatt |
118 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||| ||| | |||||| || ||| |||||||||||| |||||||||||||||||| | |
|
|
| T |
23541112 |
attcagggattgggataatggattggtagggagagaccaagctcttgaaaatacttggaaggaagaaaaccaagactcttgaatttcttgggattatact |
23541013 |
T |
|
| Q |
119 |
gtaatcttactatt |
132 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
23541012 |
gtaatcttactatt |
23540999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 43 - 161
Target Start/End: Original strand, 3815217 - 3815336
Alignment:
| Q |
43 |
ttggtagggagagaccaagctctcgaattcttggaggggagagaaccaagactctcgaatttcttggg-attatattgtaatcttactattattttatat |
141 |
Q |
| |
|
|||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| | | ||||||| | ||| ||||| ||| ||| |
|
|
| T |
3815217 |
ttggaagggagagaccaagcactcgaattcttggaggggagagaaccaagactctcgaatttcatgggaaatctattgtattattaatattaatttgtat |
3815316 |
T |
|
| Q |
142 |
tttgatatcagttcctatca |
161 |
Q |
| |
|
||||||||||||| |||||| |
|
|
| T |
3815317 |
tttgatatcagtttctatca |
3815336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 42 - 159
Target Start/End: Complemental strand, 23541001 - 23540880
Alignment:
| Q |
42 |
attggtagggagagaccaagctctcgaa--ttcttggaggggagagaaccaagactctcgaatttcttgggattatattgtaatcttactatta--tttt |
137 |
Q |
| |
|
|||||||||||||||||||||||| ||| | |||||| || ||| |||||||||||| |||||||||||||||||| |||||||||||||||| || | |
|
|
| T |
23541001 |
attggtagggagagaccaagctcttgaaaatacttggaaggaagaaaaccaagactcttgaatttcttgggattatactgtaatcttactattagtttat |
23540902 |
T |
|
| Q |
138 |
atattttgatatcagttcctat |
159 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
23540901 |
atattttgatatcagttcctat |
23540880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 43 - 161
Target Start/End: Complemental strand, 36346658 - 36346540
Alignment:
| Q |
43 |
ttggtagggagagaccaagctctcgaattcttggaggggagagaaccaagactctcgaatttcttgggattatattgtaatcttactattattttatatt |
142 |
Q |
| |
|
|||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||| | ||| ||||| ||| |||| |
|
|
| T |
36346658 |
ttggaagggagagatcaagctctcgaattcatggaggggagagaaccaagactctcgaatttcttggggaactactgtattattaatattaatttgtatt |
36346559 |
T |
|
| Q |
143 |
ttgatatcagttcctatca |
161 |
Q |
| |
|
||| |||||||| |||||| |
|
|
| T |
36346558 |
ttggtatcagtttctatca |
36346540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 43 - 120
Target Start/End: Complemental strand, 19950455 - 19950378
Alignment:
| Q |
43 |
ttggtagggagagaccaagctctcgaattcttggaggggagagaaccaagactctcgaatttcttgggattatattgt |
120 |
Q |
| |
|
|||| ||||| | ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| | |||||| |
|
|
| T |
19950455 |
ttgggagggaaaaaccaagctctcgaattcttggaggggagagaaccaaggctctcaaatttcttgggaatttattgt |
19950378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 17826271 - 17826223
Alignment:
| Q |
49 |
gggagagaccaagctctcgaattcttggaggggagagaaccaagactct |
97 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |||||||||| |
|
|
| T |
17826271 |
gggagagaccaagctctcgaattcttggagggaggagacccaagactct |
17826223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 111
Target Start/End: Complemental strand, 30038170 - 30038108
Alignment:
| Q |
49 |
gggagagaccaagctctcgaattcttggaggggagagaaccaagactctcgaatttcttggga |
111 |
Q |
| |
|
|||||||||||| |||| ||||||||||| |||||||| | | |||||| ||||||||||||| |
|
|
| T |
30038170 |
gggagagaccaaactcttgaattcttggaagggagagaccgacgactcttgaatttcttggga |
30038108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 43 - 90
Target Start/End: Complemental strand, 40670651 - 40670604
Alignment:
| Q |
43 |
ttggtagggagagaccaagctctcgaattcttggaggggagagaacca |
90 |
Q |
| |
|
|||| |||||||| |||||||||| |||||||||| |||||||||||| |
|
|
| T |
40670651 |
ttgggagggagaggccaagctctcaaattcttggacgggagagaacca |
40670604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 68 - 111
Target Start/End: Complemental strand, 43644874 - 43644831
Alignment:
| Q |
68 |
aattcttggaggggagagaaccaagactctcgaatttcttggga |
111 |
Q |
| |
|
|||||||||| |||||||| |||||||||| ||||||||||||| |
|
|
| T |
43644874 |
aattcttggaagggagagacccaagactcttgaatttcttggga |
43644831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 95
Target Start/End: Complemental strand, 1084901 - 1084847
Alignment:
| Q |
41 |
gattggtagggagagaccaagctctcgaattcttggaggggagagaaccaagact |
95 |
Q |
| |
|
||||||||| |||| |||||||| ||||||||||||| |||||||| ||||||| |
|
|
| T |
1084901 |
gattggtagagagaaaccaagctatcgaattcttggaagggagagacgcaagact |
1084847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 134; Significance: 1e-69; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 17 - 162
Target Start/End: Original strand, 6081270 - 6081415
Alignment:
| Q |
17 |
aggtattcagggattgggataaaggattggtagggagagaccaagctctcgaattcttggaggggagagaaccaagactctcgaatttcttgggattata |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
6081270 |
aggtattcagggattgggataaaggattggtagggagagaccaagctctcgaatacttggaggggagagaaccaagactctcgaatttcttgggattgta |
6081369 |
T |
|
| Q |
117 |
ttgtaatcttactattattttatattttgatatcagttcctatcaa |
162 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
6081370 |
ttgtaatcttactattagtttatattttgatatcagttcctatcaa |
6081415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 17 - 161
Target Start/End: Original strand, 6082477 - 6082621
Alignment:
| Q |
17 |
aggtattcagggattgggataaaggattggtagggagagaccaagctctcgaattcttggaggggagagaaccaagactctcgaatttcttgggattata |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
6082477 |
aggtattcagggattgggataaaggattggtagggagagaccaagctctcgaatacttggaggggagagaaccaagactctcgaatttcttgggattgta |
6082576 |
T |
|
| Q |
117 |
ttgtaatcttactattattttatattttgatatcagttcctatca |
161 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
6082577 |
ttgtaatcttactattagtttatattttgatatcagttcctatca |
6082621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 43 - 161
Target Start/End: Original strand, 17901154 - 17901274
Alignment:
| Q |
43 |
ttggtagggagagaccaagctctcgaattcttggaggggagagaaccaagactctcgaatttcttgggattatattgtaatcttactattattttata-- |
140 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||| ||||||||| |||||| |
|
|
| T |
17901154 |
ttgggagggagagaccaagctctcgaattcttggaggggagagtaccaagactctcgaatttcttgggaatctattgtaatattactattaatttatatg |
17901253 |
T |
|
| Q |
141 |
ttttgatatcagttcctatca |
161 |
Q |
| |
|
|||||||||||||| |||||| |
|
|
| T |
17901254 |
ttttgatatcagtttctatca |
17901274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 33 - 154
Target Start/End: Original strand, 27021349 - 27021468
Alignment:
| Q |
33 |
ggataaaggattggtagggagagaccaagctctcgaattcttggaggggagagaaccaagactctcgaatttcttgggattatattgtaatcttactatt |
132 |
Q |
| |
|
|||||||| | || |||||||||| |||||||||||||||||| || |||| |||||| ||||| ||||||||||||||| ||||||||| |||||||| |
|
|
| T |
27021349 |
ggataaagaaatgttagggagagatcaagctctcgaattcttgaagaggagggaaccaggactc--gaatttcttgggattctattgtaatattactatt |
27021446 |
T |
|
| Q |
133 |
attttatattttgatatcagtt |
154 |
Q |
| |
|
| | ||||||||||||||||| |
|
|
| T |
27021447 |
aagtaatattttgatatcagtt |
27021468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 109
Target Start/End: Original strand, 30640717 - 30640782
Alignment:
| Q |
43 |
ttggtagggagagaccaagctctcgaattcttggaggggagagaaccaagactctcgaatttcttgg |
109 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||||| || |||| |||||| ||||| |||||||||| |
|
|
| T |
30640717 |
ttgggagggagagaccaagctcttgaattcttggaaggcagag-accaaggctctcaaatttcttgg |
30640782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011 (Bit Score: 133; Significance: 4e-69; HSPs: 2)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 17 - 161
Target Start/End: Complemental strand, 211810 - 211666
Alignment:
| Q |
17 |
aggtattcagggattgggataaaggattggtagggagagaccaagctctcgaattcttggaggggagagaaccaagactctcgaatttcttgggattata |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
211810 |
aggtattcagggattgggataaaggattggtagggagagaccaagctctcgaatacttggaggggagagaaccaagactctcgaatttcttgggattgta |
211711 |
T |
|
| Q |
117 |
ttgtaatcttactattattttatattttgatatcagttcctatca |
161 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
211710 |
ttgtaatcttactattagtttatattttgatatcagttcctatca |
211666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 20 - 161
Target Start/End: Complemental strand, 205730 - 205589
Alignment:
| Q |
20 |
tattcagggattgggataaaggattggtagggagagaccaagctctcgaattcttggaggggagagaaccaagactctcgaatttcttgggattatattg |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
205730 |
tattcagggattgggataaaggattggtagggagagaccaagctctcgaatacttggaggggagagaaccaagactctcgaatttcttgggattgtattg |
205631 |
T |
|
| Q |
120 |
taatcttactattattttatattttgatatcagttcctatca |
161 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
205630 |
taatcttactattagtttatattttgatatcagttcctatca |
205589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026 (Bit Score: 129; Significance: 1e-66; HSPs: 2)
Name: scaffold0026
Description:
Target: scaffold0026; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 17 - 161
Target Start/End: Original strand, 80786 - 80930
Alignment:
| Q |
17 |
aggtattcagggattgggataaaggattggtagggagagaccaagctctcgaattcttggaggggagagaaccaagactctcgaatttcttgggattata |
116 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
80786 |
aggtattcagggattgggataaaggataggtagggagagaccaagctctcgaattcttggaggggagagaaccaagactctcgaatttattgggattata |
80885 |
T |
|
| Q |
117 |
ttgtaatcttactattattttatattttgatatcagttcctatca |
161 |
Q |
| |
|
||||||| ||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
80886 |
ttgtaatattactattagtttatattttgatatcagttcctatca |
80930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 17 - 155
Target Start/End: Original strand, 79590 - 79728
Alignment:
| Q |
17 |
aggtattcagggattgggataaaggattggtagggagagaccaagctctcgaattcttggaggggagagaaccaagactctcgaatttcttgggattata |
116 |
Q |
| |
|
||||||||| ||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
79590 |
aggtattcatggattaggataaaggataggtacggagagaccaagctctcgaattcttggaggggagagaaccaagactctcgaatttcttgggattata |
79689 |
T |
|
| Q |
117 |
ttgtaatcttactattattttatattttgatatcagttc |
155 |
Q |
| |
|
||||||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
79690 |
ttgtaatattactattagtttatattttgatatcagttc |
79728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0227 (Bit Score: 127; Significance: 2e-65; HSPs: 2)
Name: scaffold0227
Description:
Target: scaffold0227; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 20 - 162
Target Start/End: Original strand, 11148 - 11290
Alignment:
| Q |
20 |
tattcagggattgggataaaggattggtagggagagaccaagctctcgaattcttggaggggagagaaccaagactctcgaatttcttgggattatattg |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11148 |
tattcagggattgggataaaggattggtagggagagaccaagctctcgaaaacttggaagggagagaaccaagactctcgaatttcttgggattatattg |
11247 |
T |
|
| Q |
120 |
taatcttactattattttatattttgatatcagttcctatcaa |
162 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
11248 |
taatcttactattagtttatattttgatatcagttcctatcaa |
11290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0227; HSP #2
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 20 - 161
Target Start/End: Original strand, 12296 - 12437
Alignment:
| Q |
20 |
tattcagggattgggataaaggattggtagggagagaccaagctctcgaattcttggaggggagagaaccaagactctcgaatttcttgggattatattg |
119 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
12296 |
tattcagggattgggataaaggataggtagggagagaccaagctcttgaactcttggaggggagagaaccaagactctctaatttcttgggattatattg |
12395 |
T |
|
| Q |
120 |
taatcttactattattttatattttgatatcagttcctatca |
161 |
Q |
| |
|
|||| ||||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
12396 |
taatattactattagtttatattttgatataagttcctatca |
12437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 118; Significance: 4e-60; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 17 - 162
Target Start/End: Original strand, 11962099 - 11962244
Alignment:
| Q |
17 |
aggtattcagggattgggataaaggattggtagggagagaccaagctctcgaattcttggaggggagagaaccaagactctcgaatttcttgggattata |
116 |
Q |
| |
|
||||||||||| |||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11962099 |
aggtattcaggcattggggtaaaggattggtagggatagaccaagctctcgaacacttggaggggagagaaccaagactctcgaatttcttgggattata |
11962198 |
T |
|
| Q |
117 |
ttgtaatcttactattattttatattttgatatcagttcctatcaa |
162 |
Q |
| |
|
||||||||| ||||||| |||||||||||||||||||||||||||| |
|
|
| T |
11962199 |
ttgtaatctaactattagtttatattttgatatcagttcctatcaa |
11962244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 27 - 161
Target Start/End: Original strand, 3567045 - 3567179
Alignment:
| Q |
27 |
ggattgggataaaggattggtagggagagaccaagctctcgaattcttggaggggagagaaccaagactctcgaatttcttgggattatattgtaatctt |
126 |
Q |
| |
|
||||||| ||||||||| |||||||||||||||| || |||||||||||||||||||||||||||||| | |||||||||| |||| ||||||||| || |
|
|
| T |
3567045 |
ggattggaataaaggataggtagggagagaccaaactatcgaattcttggaggggagagaaccaagacaattgaatttcttgagattgtattgtaatatt |
3567144 |
T |
|
| Q |
127 |
actattattttatattttgatatcagttcctatca |
161 |
Q |
| |
|
||||||| |||||||||||| |||||| |||||| |
|
|
| T |
3567145 |
actattaggttatattttgatctcagtttctatca |
3567179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 41 - 108
Target Start/End: Original strand, 27869367 - 27869434
Alignment:
| Q |
41 |
gattggtagggagagaccaagctctcgaattcttggaggggagagaaccaagactctcgaatttcttg |
108 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
27869367 |
gattggtagggagagaccaagctcttgaattcttggaagggagagatgcaagactctcgaatttcttg |
27869434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 21 - 76
Target Start/End: Complemental strand, 45638801 - 45638746
Alignment:
| Q |
21 |
attcagggattgggataaaggattggtagggagagaccaagctctcgaattcttgg |
76 |
Q |
| |
|
||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |
|
|
| T |
45638801 |
attcagggattgggataaagggtaggtagggagagaccaagctctcgaattcttgg |
45638746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 49 - 111
Target Start/End: Original strand, 32992387 - 32992448
Alignment:
| Q |
49 |
gggagagaccaagctctcgaattcttggaggggagagaaccaagactctcgaatttcttggga |
111 |
Q |
| |
|
||||||||| |||||||||| ||||||||||| ||||| |||||||||||||||| ||||||| |
|
|
| T |
32992387 |
gggagagacaaagctctcgagttcttggaggg-agagacccaagactctcgaattccttggga |
32992448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 109
Target Start/End: Complemental strand, 34523095 - 34523035
Alignment:
| Q |
48 |
agggagagaccaa-gctctcgaattcttggaggggagagaaccaagactctcgaatttcttgg |
109 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
34523095 |
agggagagaccaaagctctcgagttcttggaggg-agaga-ccaagactctcgaatttcttgg |
34523035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 75 - 108
Target Start/End: Original strand, 54291698 - 54291731
Alignment:
| Q |
75 |
ggaggggagagaaccaagactctcgaatttcttg |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
54291698 |
ggaggggagagaaccaagactctcgaatttcttg |
54291731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 161
Target Start/End: Complemental strand, 45638760 - 45638693
Alignment:
| Q |
94 |
ctctcgaatttcttgggattatattgtaatcttactattattttata-ttttgatatcagttcctatca |
161 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||||||||| |||||| ||| ||||| |||| |||||| |
|
|
| T |
45638760 |
ctctcgaatt-cttgggattatattgtaatattactattagtttatactttggatattagtttctatca |
45638693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 111
Target Start/End: Complemental strand, 36982362 - 36982313
Alignment:
| Q |
61 |
gctctcgaattcttggaggggagagaaccaagactctcgaatttcttggga |
111 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||| ||||| ||||||| |
|
|
| T |
36982362 |
gctctcgaattcttgga-gggagagatccaagactctagaattccttggga |
36982313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 76
Target Start/End: Complemental strand, 54641065 - 54641031
Alignment:
| Q |
42 |
attggtagggagagaccaagctctcgaattcttgg |
76 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| |
|
|
| T |
54641065 |
attggttgggagagaccaagctctcgaattcttgg |
54641031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 114; Significance: 9e-58; HSPs: 13)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 21 - 162
Target Start/End: Original strand, 40254477 - 40254617
Alignment:
| Q |
21 |
attcagggattgggataaaggattggtagggagagaccaagctctcgaattcttggaggggagagaaccaagactctcgaatttcttgggattatattgt |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
40254477 |
attcagggattgggataaaggattggtagggagagaccaagctctc-aattcttggaggggagagaaccaagactctcgaatttcttgggattctattgt |
40254575 |
T |
|
| Q |
121 |
aatcttactattattttatattttgatatcagttcctatcaa |
162 |
Q |
| |
|
||| ||||||||| |||||||||||||||| ||| ||||||| |
|
|
| T |
40254576 |
aatattactattaatttatattttgatatctgtttctatcaa |
40254617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 49 - 163
Target Start/End: Original strand, 21661182 - 21661296
Alignment:
| Q |
49 |
gggagagaccaagctctcgaattcttggaggggagagaaccaagactctcgaatttcttgggattatattgtaatcttactattattttatattttgata |
148 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
21661182 |
gggagagaccaagctctcgaattattggaggggagagaaccaagactctcgaatttcttgggaatatattgtaatcttactattagtttatattttgata |
21661281 |
T |
|
| Q |
149 |
tcagttcctatcaat |
163 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
21661282 |
tcagttcctgtcaat |
21661296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 33 - 161
Target Start/End: Complemental strand, 2411187 - 2411061
Alignment:
| Q |
33 |
ggataaaggattggtagggagagaccaagctctcgaattcttggaggggagagaaccaagactctcgaatttcttgggattatattgtaatcttactatt |
132 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||||||||| |||||||||||||| |||||||| |||||||| |
|
|
| T |
2411187 |
ggataaaggattggtagggagagaccaagctc--gaattcctggaggggagagaatcaagactctcaaatttcttgggattcgattgtaatattactatt |
2411090 |
T |
|
| Q |
133 |
attttatattttgatatcagttcctatca |
161 |
Q |
| |
|
| |||||||||||||||||||| |||||| |
|
|
| T |
2411089 |
agtttatattttgatatcagtttctatca |
2411061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 86 - 161
Target Start/End: Complemental strand, 26247043 - 26246968
Alignment:
| Q |
86 |
aaccaagactctcgaatttcttgggattatattgtaatcttactattattttatattttgatatcagttcctatca |
161 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
26247043 |
aaccaagactctcgaatttcttgggattatattgtaatcttactattagtttatattttgatatcagttcctatca |
26246968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 42 - 111
Target Start/End: Complemental strand, 5176665 - 5176597
Alignment:
| Q |
42 |
attggtagggagagaccaagctctcgaattcttggaggggagagaaccaagactctcgaatttcttggga |
111 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||| |
|
|
| T |
5176665 |
attggttgggagagaccaagctctcgaattcttgga-gggagagacccaagactctcgaattccttggga |
5176597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 284 - 347
Target Start/End: Complemental strand, 37330438 - 37330375
Alignment:
| Q |
284 |
gatctcactatttttctctttaaccacatccctaactttttgaacaacaatccaagtcaactca |
347 |
Q |
| |
|
|||||||| ||||||||| | |||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
37330438 |
gatctcacgatttttctcctcaaccacatccctaactttttgaacaacaatcctagtcaactca |
37330375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 33 - 133
Target Start/End: Original strand, 13260936 - 13261037
Alignment:
| Q |
33 |
ggataaaggattggtagggagagaccaagctctcgaattcttggag-gggagagaaccaagactctcgaatttcttgggattatattgtaatcttactat |
131 |
Q |
| |
|
||||||||||||||| |||||||| |||||||| ||||||| | |||||||| |||||||||||||||||||||||| | |||||||| ||||||| |
|
|
| T |
13260936 |
ggataaaggattggtcgggagagaataagctctctgattcttgaaaagggagagatccaagactctcgaatttcttgggaatttattgtaacattactat |
13261035 |
T |
|
| Q |
132 |
ta |
133 |
Q |
| |
|
|| |
|
|
| T |
13261036 |
ta |
13261037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 180 - 236
Target Start/End: Complemental strand, 37331571 - 37331515
Alignment:
| Q |
180 |
agaagagaataatgcaatcagctacaacttacaaatttattcagttactccctccaa |
236 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||||||||||||||||| ||||||| |
|
|
| T |
37331571 |
agaatagaataatgcaatcagctgcaacttacaaatttattcagttacgtcctccaa |
37331515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 53 - 111
Target Start/End: Original strand, 26187541 - 26187599
Alignment:
| Q |
53 |
gagaccaagctctcgaattcttggaggggagagaaccaagactctcgaatttcttggga |
111 |
Q |
| |
|
|||||||||||||| |||||||||| |||||||| ||||| ||||| |||||||||||| |
|
|
| T |
26187541 |
gagaccaagctctcaaattcttggaagggagagacccaaggctctcaaatttcttggga |
26187599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 34 - 106
Target Start/End: Original strand, 19729196 - 19729268
Alignment:
| Q |
34 |
gataaaggattggtagggagagaccaagctctcgaattcttggaggggagagaaccaagactctcgaatttct |
106 |
Q |
| |
|
||||||| |||| || |||||||||||||||||||||||||||| |||| | | |||||||||| ||||||| |
|
|
| T |
19729196 |
gataaagtattgttaaggagagaccaagctctcgaattcttggaagggaaacacccaagactcttaaatttct |
19729268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 48 - 108
Target Start/End: Complemental strand, 43506470 - 43506411
Alignment:
| Q |
48 |
agggagagaccaagctctcgaattcttggaggggagagaaccaagactctcgaatttcttg |
108 |
Q |
| |
|
||||||||||||||||||| ||||||| | ||||||| |||||||||||||||||||||| |
|
|
| T |
43506470 |
agggagagaccaagctctctaattcttcaaagggagag-accaagactctcgaatttcttg |
43506411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 109
Target Start/End: Complemental strand, 29857521 - 29857465
Alignment:
| Q |
51 |
gagagaccaagctctcgaattcttggaggggagagaaccaagactctcgaatttcttgg |
109 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||||| ||||| ||||||||||||||||| |
|
|
| T |
29857521 |
gagagaccaagctctctaattcttgga-gggagag-accaaaactctcgaatttcttgg |
29857465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 53 - 109
Target Start/End: Complemental strand, 38198706 - 38198652
Alignment:
| Q |
53 |
gagaccaagctctcgaattcttggaggggagagaaccaagactctcgaatttcttgg |
109 |
Q |
| |
|
|||||||||||||| |||||||||| ||||||| ||| | ||||||||||||||||| |
|
|
| T |
38198706 |
gagaccaagctctcaaattcttgga-gggagag-accgatactctcgaatttcttgg |
38198652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 17 - 133
Target Start/End: Complemental strand, 178007 - 177891
Alignment:
| Q |
17 |
aggtattcagggattgggataaaggattggtagggagagaccaagctctcgaattcttggaggggagagaaccaagactctcgaatttcttgggattata |
116 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
178007 |
aggtattcagggattggggtaaaggattggtagggagagaccaagctctcgaatacttggaggggagagaaccaagactctcgaatttcttgggattata |
177908 |
T |
|
| Q |
117 |
ttgtaatcttactatta |
133 |
Q |
| |
|
|||||||||||| |||| |
|
|
| T |
177907 |
ttgtaatcttaccatta |
177891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 105; Significance: 2e-52; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 17 - 161
Target Start/End: Original strand, 33789948 - 33790095
Alignment:
| Q |
17 |
aggtattcagggattgggataaaggattggtagggagagaccaagctctcgaattcttggaggggagagaaccaagactctcgaatttcttgggat--ta |
114 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
33789948 |
aggtattcagggattgggataaaggataggtagggagagaccaagctctcaaattcttggaggggagagaaccaagactctcgaatttcttgggattata |
33790047 |
T |
|
| Q |
115 |
tattgtaat-cttactattattttatattttgatatcagttcctatca |
161 |
Q |
| |
|
||||||||| ||||||| | |||||||||||||||||||| |||||| |
|
|
| T |
33790048 |
tattgtaataattactataaatttatattttgatatcagtttctatca |
33790095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 20 - 162
Target Start/End: Original strand, 12324925 - 12325070
Alignment:
| Q |
20 |
tattcagggattgggataaaggattggtagggagagaccaagctctcgaattcttggaggggagagaaccaagactctcgaatttcttgggat--tatat |
117 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
12324925 |
tattcagggattgcgataaaggattggtagggagagaccaaactctcgaatttttggaggggagagaaccaagactctcgaattccttgggattatatat |
12325024 |
T |
|
| Q |
118 |
tgtaat-cttactattattttatattttgatatcagttcctatcaa |
162 |
Q |
| |
|
|||||| ||||||| | |||||||||||||||||||| ||||||| |
|
|
| T |
12325025 |
tgtaataattactataaatttatattttgatatcagtttctatcaa |
12325070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 33 - 161
Target Start/End: Original strand, 18955452 - 18955580
Alignment:
| Q |
33 |
ggataaaggattggtagggagagaccaagctctcgaattcttggaggggagagaaccaagactctcgaatttcttgggattatattgtaatcttactatt |
132 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |||||||||| |||||||| | |||||||| ||||||| ||| |||||||| || |||| |
|
|
| T |
18955452 |
ggataaaggattggtagggagagaccaatctctctaattcttggaagggagagacctgagactctcagatttcttcggaacccattgtaattatattatt |
18955551 |
T |
|
| Q |
133 |
attttatattttgatatcagttcctatca |
161 |
Q |
| |
|
| ||| ||||||| || ||||| |||||| |
|
|
| T |
18955552 |
aatttgtattttggtaccagtttctatca |
18955580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 33 - 161
Target Start/End: Original strand, 3302449 - 3302576
Alignment:
| Q |
33 |
ggataaaggattggtagggagagaccaa-gctctcgaattcttggaggggagagaaccaagactctcgaatttcttgggattatattgtaatcttactat |
131 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| ||||||||||| ||| | ||||| |||| | ||||||||| ||| ||||||| | ||||||| |
|
|
| T |
3302449 |
ggataaaggattggtagggagagaccaaggctcttgaattcttgga-atgagtg-accaatactcacaaatttcttgagatcctattgtagtattactat |
3302546 |
T |
|
| Q |
132 |
tattttatattttgatatcagttcctatca |
161 |
Q |
| |
|
|| ||| ||||||| |||||||| |||||| |
|
|
| T |
3302547 |
taatttgtattttggtatcagtttctatca |
3302576 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 49 - 109
Target Start/End: Complemental strand, 13218802 - 13218743
Alignment:
| Q |
49 |
gggagagaccaagctctcgaattcttggaggggagagaaccaagactctcgaatttcttgg |
109 |
Q |
| |
|
||||||||||||||||||||||||||| | |||||||| |||| ||||| ||||||||||| |
|
|
| T |
13218802 |
gggagagaccaagctctcgaattcttgcaagggagagacccaa-actcttgaatttcttgg |
13218743 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 111
Target Start/End: Original strand, 11963024 - 11963092
Alignment:
| Q |
43 |
ttggtagggagagaccaagctctcgaattcttggaggggagagaaccaagactctcgaatttcttggga |
111 |
Q |
| |
|
|||| |||||||||||| ||||| |||||||| | | ||||||||||||||||| ||||||| ||||| |
|
|
| T |
11963024 |
ttgggagggagagaccaggctcttgaattcttcaaagagagagaaccaagactcttgaatttcgtggga |
11963092 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 236
Target Start/End: Original strand, 30976023 - 30976079
Alignment:
| Q |
180 |
agaagagaataatgcaatcagctacaacttacaaatttattcagttactccctccaa |
236 |
Q |
| |
|
|||| |||||||||||||||||| ||||||| ||||||||| |||||| ||||||| |
|
|
| T |
30976023 |
agaatagaataatgcaatcagctgcaacttagaaatttattaagttacatcctccaa |
30976079 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 109
Target Start/End: Original strand, 37578206 - 37578258
Alignment:
| Q |
57 |
ccaagctctcgaattcttggaggggagagaaccaagactctcgaatttcttgg |
109 |
Q |
| |
|
||||||||||||||| ||||| ||||||| |||| ||||||||||||||||| |
|
|
| T |
37578206 |
ccaagctctcgaattattggaatggagagacccaaaactctcgaatttcttgg |
37578258 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 109
Target Start/End: Complemental strand, 42599753 - 42599698
Alignment:
| Q |
53 |
gagaccaagctctcgaattcttggaggggagagaaccaagactctcgaatttcttgg |
109 |
Q |
| |
|
||||||||||| || |||||||||| |||||| |||||||||||| ||||||||||| |
|
|
| T |
42599753 |
gagaccaagctttcaaattcttggaagggaga-aaccaagactcttgaatttcttgg |
42599698 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0063 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0063
Description:
Target: scaffold0063; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 49 - 94
Target Start/End: Original strand, 33903 - 33947
Alignment:
| Q |
49 |
gggagagaccaagctctcgaattcttggaggggagagaaccaagac |
94 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
33903 |
gggagagaccaagctctcgaattcttgga-gggagagatccaagac |
33947 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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