View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17150_low_1 (Length: 446)
Name: NF17150_low_1
Description: NF17150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17150_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 372; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 20 - 431
Target Start/End: Complemental strand, 25820863 - 25820453
Alignment:
| Q |
20 |
gcaatctcatataattttagaaaagattgcatctttaggtgaaattcactgactcatcgcgaagaataagaaaaatacataaatctagaattataaaaga |
119 |
Q |
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| T |
25820863 |
gcaatctcatataattttagaaaa-attgcatctttaggtgaaattcactgactcatcgcgaagaataagaaaaatacataaatctagaattataaaaga |
25820765 |
T |
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| Q |
120 |
agaacttacatgaataaggaaactgcaccaaaacttggtgaatgtttagaaacttggaaaacaatgcaaaggaagaagtggaagacactttcagtgtctt |
219 |
Q |
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| T |
25820764 |
agaacttacattaataaggaaactgcaccaaaacttggtgaatgtttagaaacttggaaaacaacgcaaaggaagaagtggaagactctttcagtgtctt |
25820665 |
T |
|
| Q |
220 |
tagttgttttacagttttgaggtcaaaaagaaaatcccaccgtgctgctgcactagtcactgctaaatagatcagttcaagacagttagaaaaacagtta |
319 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
25820664 |
tagttgttttacggttttgaggtcaaaaagaaaatcccaccgagctgctgcactagtcactgctaaatagatcagtttaagacagttagaaaaacagtta |
25820565 |
T |
|
| Q |
320 |
gaagctgttatatcagttccagatttcatagagagataattgaggtggtttcttgttttacaagcatagttactctacatgaggtgtatcttaccttatg |
419 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
25820564 |
gaagctgttatatcagttccagatttcctagagagataattgaggtggtttcttgttttacaagcaaagttactctacatgaggtgtatcttaccttatg |
25820465 |
T |
|
| Q |
420 |
atcggacctatg |
431 |
Q |
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| T |
25820464 |
atcggacctatg |
25820453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 20 - 281
Target Start/End: Complemental strand, 25815120 - 25814859
Alignment:
| Q |
20 |
gcaatctcatataattttagaaaagattgcatctttaggtgaaattcactgactcatcgcgaagaataagaaaaatacataaatctagaattataaaaga |
119 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||||||||||| ||| |
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| T |
25815120 |
gcaatctcatataattttagaaaagatagcatctttaggtgaaattcattgactcagcatgaagaataagaaaaatacataaatctagaattataataga |
25815021 |
T |
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| Q |
120 |
agaacttacatgaataaggaaactgcaccaaaacttggtgaatgtttagaaacttggaaaacaatgcaaaggaagaagtggaagacactttcagtgtctt |
219 |
Q |
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|||||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||| ||| ||||||||||||||||||||| ||||||||| || |
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| T |
25815020 |
agaacttacatgaataaggaaactgcgccaaaatctggtgaaggtttagaaacttggaaagcaaggcaaaggaagaagtggaagactttttcagtgtgtt |
25814921 |
T |
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| Q |
220 |
tagttgttttacagttttgaggtcaaaaagaaaatcccaccgtgctgctgcactagtcactg |
281 |
Q |
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| T |
25814920 |
ttgctgttttacgattttgaggtaaaaaagaaaaactcaccaagctgctgaactagtcactg |
25814859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 326 - 430
Target Start/End: Complemental strand, 25814782 - 25814682
Alignment:
| Q |
326 |
gttatatcagttccagatttcatagagagataattgaggtggtttcttgttttacaagcatagttactctacatgaggtgtatcttaccttatgatcgga |
425 |
Q |
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|||||||||||||||||||||| ||| || ||||||| ||||||||||||||||||| ||||||||||||||||||| | ||||||||||||| ||| |
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| T |
25814782 |
gttatatcagttccagatttca----gagttagttgaggtagtttcttgttttacaagcaaagttactctacatgaggtgcagcttaccttatgatagga |
25814687 |
T |
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| Q |
426 |
cctat |
430 |
Q |
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|||| |
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| T |
25814686 |
gctat |
25814682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 80 - 169
Target Start/End: Complemental strand, 25821018 - 25820929
Alignment:
| Q |
80 |
gaagaataagaaaaatacataaatctagaattataaaagaagaacttacatgaataaggaaactgcaccaaaacttggtgaatgtttaga |
169 |
Q |
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| T |
25821018 |
gaagaataagaaaaatacacaaaggtgaaatcaaaaaagaataacttacatgagcaaggaaacagcaccaaaacttggtgaaggtttaga |
25820929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 84 - 166
Target Start/End: Complemental strand, 25815288 - 25815206
Alignment:
| Q |
84 |
aataagaaaaatacataaatctagaattataaaagaagaacttacatgaataaggaaactgcaccaaaacttggtgaatgttt |
166 |
Q |
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|||| |||||||| ||||| | |||| | |||| |||| |||||||||| |||||||| |||||||||||||||||| |||| |
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| T |
25815288 |
aataggaaaaatagataaaggtggaatcaaaaaacaagagcttacatgaacaaggaaacagcaccaaaacttggtgaaggttt |
25815206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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