View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17151_low_2 (Length: 372)

Name: NF17151_low_2
Description: NF17151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17151_low_2
NF17151_low_2
[»] chr2 (9 HSPs)
chr2 (9-354)||(2808682-2809028)
chr2 (271-335)||(2814047-2814111)
chr2 (20-71)||(34598794-34598845)
chr2 (20-70)||(45128013-45128063)
chr2 (23-72)||(30420483-30420532)
chr2 (20-69)||(36233814-36233863)
chr2 (20-70)||(27476963-27477013)
chr2 (20-72)||(33229211-33229263)
chr2 (20-72)||(41712988-41713040)
[»] chr4 (11 HSPs)
chr4 (20-70)||(6972626-6972676)
chr4 (20-70)||(5333751-5333801)
chr4 (20-66)||(25273695-25273741)
chr4 (20-68)||(29965493-29965541)
chr4 (20-71)||(31381894-31381945)
chr4 (20-70)||(50766734-50766784)
chr4 (20-65)||(867978-868023)
chr4 (17-70)||(10359767-10359820)
chr4 (20-69)||(10389976-10390025)
chr4 (22-70)||(20569068-20569116)
chr4 (20-56)||(53616874-53616910)
[»] chr1 (9 HSPs)
chr1 (20-70)||(7342530-7342580)
chr1 (20-66)||(9919238-9919284)
chr1 (31-70)||(5701065-5701104)
chr1 (20-70)||(31836674-31836724)
chr1 (20-70)||(51871673-51871723)
chr1 (20-69)||(40646497-40646546)
chr1 (20-68)||(45806033-45806081)
chr1 (20-65)||(5324780-5324825)
chr1 (20-73)||(50166321-50166374)
[»] scaffold0426 (1 HSPs)
scaffold0426 (20-70)||(6143-6193)
[»] chr3 (7 HSPs)
chr3 (20-70)||(4172368-4172418)
chr3 (20-68)||(32607271-32607319)
chr3 (20-70)||(4178366-4178416)
chr3 (20-70)||(25849623-25849672)
chr3 (40-71)||(2342293-2342324)
chr3 (20-70)||(38855259-38855309)
chr3 (20-65)||(46934449-46934494)
[»] chr7 (9 HSPs)
chr7 (10-66)||(1449042-1449098)
chr7 (20-67)||(26492172-26492219)
chr7 (20-70)||(12539178-12539228)
chr7 (20-70)||(21266196-21266246)
chr7 (20-70)||(23085326-23085376)
chr7 (20-70)||(26583518-26583568)
chr7 (20-70)||(42311084-42311134)
chr7 (20-65)||(22928093-22928138)
chr7 (20-69)||(46821819-46821868)
[»] chr8 (8 HSPs)
chr8 (20-70)||(9619581-9619631)
chr8 (17-57)||(11725506-11725546)
chr8 (25-69)||(29777041-29777085)
chr8 (20-60)||(33895903-33895943)
chr8 (34-69)||(19876029-19876064)
chr8 (18-65)||(44100153-44100200)
chr8 (20-70)||(14907147-14907197)
chr8 (20-69)||(11196704-11196753)
[»] chr6 (5 HSPs)
chr6 (20-70)||(25064039-25064089)
chr6 (25-70)||(16418963-16419008)
chr6 (20-70)||(8496769-8496819)
chr6 (20-69)||(17334582-17334630)
chr6 (20-69)||(23947540-23947589)
[»] chr5 (8 HSPs)
chr5 (25-70)||(19281172-19281217)
chr5 (20-70)||(42579684-42579734)
chr5 (34-71)||(19260045-19260082)
chr5 (20-65)||(36344712-36344757)
chr5 (20-65)||(41184667-41184712)
chr5 (20-52)||(3271629-3271661)
chr5 (20-56)||(7241603-7241639)
chr5 (20-56)||(7246779-7246815)


Alignment Details
Target: chr2 (Bit Score: 295; Significance: 1e-166; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 9 - 354
Target Start/End: Original strand, 2808682 - 2809028
Alignment:
Q  9 gaagaatatgaaagaaaaaatctagagagagaaaattagggccggcttattggagagggagaaaacacatatgtaataaacatactattgagtcgcgaaa 108  Q
    |||||| ||||||||||||| ||||| | ||||||||||||||| |||  ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  2808682 gaagaaaatgaaagaaaaaacctagaaaaagaaaattagggccgacttgatggagagggagaaaacacatatgtaataaacatactattaagtcgcgaaa 2808781  T
Q  109 aaggtcac-acaatacgagttaccgaaataaatgtaattggatccatcaatattaattttgaaataacttaggaggtttccacttgatgagaatttcaat 207  Q
    |||||||| |||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2808782 aaggtcaccacaataggagttaccgaaagaaatgtaattggatccatcaatattaattttgaaataacttaggaggtttccacttgatgagaatttcaat 2808881  T
Q  208 ttgagtgtcactcaagtaagcaggagggcactgcaaagttgagtatgaataacatccacttaattacctaaactaatcatgaattactcagggtaatatg 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  2808882 ttgagtgtcactcaagtaagcaggagggcactgcaaagttgagtatgaataacatccacttaattacctaaactaatcatgaattactcggggtaatatg 2808981  T
Q  308 aaatttttgagaaaattatcttatttttgtcaaaccaaagcatacaa 354  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  2808982 aaatttttgagaaaattatcttatttttgtcaaaccaaagcatacaa 2809028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 271 - 335
Target Start/End: Original strand, 2814047 - 2814111
Alignment:
Q  271 ttacctaaactaatcatgaattactcagggtaatatgaaatttttgagaaaattatcttattttt 335  Q
    |||||||||||||||||||||| ||||||||||||||| ||| || | ||||| |||||||||||    
T  2814047 ttacctaaactaatcatgaattgctcagggtaatatgagattcttaataaaatgatcttattttt 2814111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 71
Target Start/End: Complemental strand, 34598845 - 34598794
Alignment:
Q  20 aagaaaaaatctagagagagaaaattagggccggcttattggagagggagaa 71  Q
    |||| |||| ||||||||||||||||||||||||||| ||||||||||||||    
T  34598845 aagagaaaacctagagagagaaaattagggccggcttgttggagagggagaa 34598794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 45128063 - 45128013
Alignment:
Q  20 aagaaaaaatctagagagagaaaattagggccggcttattggagagggaga 70  Q
    |||| |||| ||||||||||||||||||| |||||||||||||||||||||    
T  45128063 aagagaaaacctagagagagaaaattaggaccggcttattggagagggaga 45128013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 23 - 72
Target Start/End: Complemental strand, 30420532 - 30420483
Alignment:
Q  23 aaaaaatctagagagagaaaattagggccggcttattggagagggagaaa 72  Q
    |||||| |||||||||||| | |||||||||||| |||||||||||||||    
T  30420532 aaaaaacctagagagagaagactagggccggcttgttggagagggagaaa 30420483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 36233863 - 36233814
Alignment:
Q  20 aagaaaaaatctagagagagaaaattagggccggcttattggagagggag 69  Q
    |||| ||||||||||||||||||| |||||||| ||| ||||||||||||    
T  36233863 aagagaaaatctagagagagaaaactagggccgacttgttggagagggag 36233814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 27477013 - 27476963
Alignment:
Q  20 aagaaaaaatctagagagagaaaattagggccggcttattggagagggaga 70  Q
    ||||||||| ||||||| |||||| |||||||  |||||||||||||||||    
T  27477013 aagaaaaaacctagagacagaaaactagggccaacttattggagagggaga 27476963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 72
Target Start/End: Original strand, 33229211 - 33229263
Alignment:
Q  20 aagaaaaaatctagagagagaaaattagggccggcttattggagagggagaaa 72  Q
    |||| |||| |||||||||| ||| |||||||||||| || ||||||||||||    
T  33229211 aagagaaaacctagagagaggaaactagggccggcttgtttgagagggagaaa 33229263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 72
Target Start/End: Original strand, 41712988 - 41713040
Alignment:
Q  20 aagaaaaaatctagagagagaaaattagggccggcttattggagagggagaaa 72  Q
    |||| |||| ||||| |||||||| ||||| ||||||||||||||| ||||||    
T  41712988 aagagaaaacctagatagagaaaactagggtcggcttattggagagtgagaaa 41713040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 6972676 - 6972626
Alignment:
Q  20 aagaaaaaatctagagagagaaaattagggccggcttattggagagggaga 70  Q
    ||||||||| ||||||||||||||||||||||||||| |||||||||||||    
T  6972676 aagaaaaaacctagagagagaaaattagggccggcttgttggagagggaga 6972626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 5333751 - 5333801
Alignment:
Q  20 aagaaaaaatctagagagagaaaattagggccggcttattggagagggaga 70  Q
    |||| |||| ||||||||| ||||||||||||||||| |||||||||||||    
T  5333751 aagagaaaacctagagagaaaaaattagggccggcttgttggagagggaga 5333801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 25273741 - 25273695
Alignment:
Q  20 aagaaaaaatctagagagagaaaattagggccggcttattggagagg 66  Q
    |||| ||||||||||||||||||| |||||||||||| |||||||||    
T  25273741 aagagaaaatctagagagagaaaactagggccggcttgttggagagg 25273695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 29965541 - 29965493
Alignment:
Q  20 aagaaaaaatctagagagagaaaattagggccggcttattggagaggga 68  Q
    |||| |||| ||||||||||||||||||||||| ||| |||||||||||    
T  29965541 aagagaaaacctagagagagaaaattagggccgacttgttggagaggga 29965493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 20 - 71
Target Start/End: Original strand, 31381894 - 31381945
Alignment:
Q  20 aagaaaaaatctagagagagaaaattagggccggcttattggagagggagaa 71  Q
    |||| |||||||||||||||||||||||| ||||||| | | ||||||||||    
T  31381894 aagagaaaatctagagagagaaaattaggaccggcttgtggaagagggagaa 31381945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 50766734 - 50766784
Alignment:
Q  20 aagaaaaaatctagagagagaaaattagggccggcttattggagagggaga 70  Q
    |||| |||| ||||||||| |||| |||||||||||| |||||||||||||    
T  50766734 aagagaaaacctagagagaaaaaactagggccggcttgttggagagggaga 50766784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 868023 - 867978
Alignment:
Q  20 aagaaaaaatctagagagagaaaattagggccggcttattggagag 65  Q
    |||| |||| |||||||||||||| |||||||||||| ||||||||    
T  868023 aagagaaaacctagagagagaaaactagggccggctttttggagag 867978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 10359767 - 10359820
Alignment:
Q  17 tgaaagaaaaaatctagagagagaaaattagggccggcttattggagagggaga 70  Q
    ||||||| |||||||||||||| ||||||| ||||  ||| |||||||||||||    
T  10359767 tgaaagagaaaatctagagagaaaaaattaaggccatcttgttggagagggaga 10359820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 10389976 - 10390025
Alignment:
Q  20 aagaaaaaatctagagagagaaaattagggccggcttattggagagggag 69  Q
    |||| |||| ||||| |||||||| |||||||||||| ||||||||||||    
T  10389976 aagagaaaacctagaaagagaaaactagggccggcttgttggagagggag 10390025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 20569116 - 20569068
Alignment:
Q  22 gaaaaaatctagagagagaaaattagggccggcttattggagagggaga 70  Q
    ||||||| |||||| ||||||| ||| |||||||| |||||||||||||    
T  20569116 gaaaaaacctagagggagaaaactagagccggcttgttggagagggaga 20569068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 56
Target Start/End: Original strand, 53616874 - 53616910
Alignment:
Q  20 aagaaaaaatctagagagagaaaattagggccggctt 56  Q
    |||| |||| |||||||||||||||||||||||||||    
T  53616874 aagagaaaacctagagagagaaaattagggccggctt 53616910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 7342580 - 7342530
Alignment:
Q  20 aagaaaaaatctagagagagaaaattagggccggcttattggagagggaga 70  Q
    |||| |||| |||||||||||||||||||||||||||||||||||||||||    
T  7342580 aagagaaaacctagagagagaaaattagggccggcttattggagagggaga 7342530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 9919284 - 9919238
Alignment:
Q  20 aagaaaaaatctagagagagaaaattagggccggcttattggagagg 66  Q
    |||| |||||||||||||||||||||||||||||||| |||||||||    
T  9919284 aagagaaaatctagagagagaaaattagggccggcttgttggagagg 9919238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 31 - 70
Target Start/End: Complemental strand, 5701104 - 5701065
Alignment:
Q  31 tagagagagaaaattagggccggcttattggagagggaga 70  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  5701104 tagagagagaaaactagggccggcttattggagagggaga 5701065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 31836724 - 31836674
Alignment:
Q  20 aagaaaaaatctagagagagaaaattagggccggcttattggagagggaga 70  Q
    |||| |||| |||||||||||||| |||||||||||| |||||||||||||    
T  31836724 aagagaaaacctagagagagaaaactagggccggcttgttggagagggaga 31836674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 51871723 - 51871673
Alignment:
Q  20 aagaaaaaatctagagagagaaaattagggccggcttattggagagggaga 70  Q
    |||| |||| ||||||||||||||||||||||| ||| |||||||||||||    
T  51871723 aagagaaaacctagagagagaaaattagggccgacttgttggagagggaga 51871673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 40646546 - 40646497
Alignment:
Q  20 aagaaaaaatctagagagagaaaattagggccggcttattggagagggag 69  Q
    |||| |||| |||||||||||||| |||||||||||| ||||||||||||    
T  40646546 aagagaaaacctagagagagaaaactagggccggcttgttggagagggag 40646497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 45806033 - 45806081
Alignment:
Q  20 aagaaaaaatctagagagagaaaattagggccggcttattggagaggga 68  Q
    |||| |||||||||||||||||||||||| ||| ||| |||||||||||    
T  45806033 aagagaaaatctagagagagaaaattaggaccgacttgttggagaggga 45806081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 5324780 - 5324825
Alignment:
Q  20 aagaaaaaatctagagagagaaaattagggccggcttattggagag 65  Q
    |||| |||||||||||||||||||||||||| | ||| ||||||||    
T  5324780 aagagaaaatctagagagagaaaattagggctgacttgttggagag 5324825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 50166321 - 50166374
Alignment:
Q  20 aagaaaaaatctagagagagaaaattagggccggcttattggagagggagaaaa 73  Q
    |||| |||| ||||||||||||||||| || |||||| ||||||||| ||||||    
T  50166321 aagagaaaacctagagagagaaaattatgggcggcttgttggagaggaagaaaa 50166374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0426 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0426
Description:

Target: scaffold0426; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 6193 - 6143
Alignment:
Q  20 aagaaaaaatctagagagagaaaattagggccggcttattggagagggaga 70  Q
    |||| |||| ||| |||||||||||||||||||||||||||||||||||||    
T  6193 aagagaaaacctaaagagagaaaattagggccggcttattggagagggaga 6143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 4172418 - 4172368
Alignment:
Q  20 aagaaaaaatctagagagagaaaattagggccggcttattggagagggaga 70  Q
    |||||||||||||||||||||||| |||||||| ||| |||||||||||||    
T  4172418 aagaaaaaatctagagagagaaaactagggccgacttgttggagagggaga 4172368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 32607319 - 32607271
Alignment:
Q  20 aagaaaaaatctagagagagaaaattagggccggcttattggagaggga 68  Q
    |||| ||||||||||||||||||| |||||||||||| |||||||||||    
T  32607319 aagagaaaatctagagagagaaaactagggccggcttgttggagaggga 32607271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 4178416 - 4178366
Alignment:
Q  20 aagaaaaaatctagagagagaaaattagggccggcttattggagagggaga 70  Q
    ||||||||| |||||||||||||| |||||||| ||| |||||||||||||    
T  4178416 aagaaaaaacctagagagagaaaactagggccgacttgttggagagggaga 4178366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 25849672 - 25849623
Alignment:
Q  20 aagaaaaaatctagagagagaaaattagggccggcttattggagagggaga 70  Q
    ||||||||| ||||||||| |||| ||||||||||||||||||||||||||    
T  25849672 aagaaaaaacctagagaga-aaaactagggccggcttattggagagggaga 25849623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 40 - 71
Target Start/End: Complemental strand, 2342324 - 2342293
Alignment:
Q  40 aaaattagggccggcttattggagagggagaa 71  Q
    ||||||||||||||||||||||||||||||||    
T  2342324 aaaattagggccggcttattggagagggagaa 2342293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 38855259 - 38855309
Alignment:
Q  20 aagaaaaaatctagagagagaaaattagggccggcttattggagagggaga 70  Q
    |||| |||| |||||||||||||| ||||| |||||| |||||||||||||    
T  38855259 aagagaaaacctagagagagaaaactagggtcggcttgttggagagggaga 38855309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 46934494 - 46934449
Alignment:
Q  20 aagaaaaaatctagagagagaaaattagggccggcttattggagag 65  Q
    |||| |||| ||||||||||||||||||||||| ||| ||||||||    
T  46934494 aagagaaaacctagagagagaaaattagggccgacttgttggagag 46934449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 10 - 66
Target Start/End: Original strand, 1449042 - 1449098
Alignment:
Q  10 aagaatatgaaagaaaaaatctagagagagaaaattagggccggcttattggagagg 66  Q
    |||||| || ||||||||| |||||||||||||| |||||||||||| |||||||||    
T  1449042 aagaatctggaagaaaaaacctagagagagaaaactagggccggcttgttggagagg 1449098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 67
Target Start/End: Complemental strand, 26492219 - 26492172
Alignment:
Q  20 aagaaaaaatctagagagagaaaattagggccggcttattggagaggg 67  Q
    |||| |||||||||||||| |||| |||||||||||||||||||||||    
T  26492219 aagacaaaatctagagagataaaactagggccggcttattggagaggg 26492172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 12539178 - 12539228
Alignment:
Q  20 aagaaaaaatctagagagagaaaattagggccggcttattggagagggaga 70  Q
    |||| ||||||||||||||||||| ||||| |||||| |||||||||||||    
T  12539178 aagagaaaatctagagagagaaaactagggtcggcttgttggagagggaga 12539228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 21266246 - 21266196
Alignment:
Q  20 aagaaaaaatctagagagagaaaattagggccggcttattggagagggaga 70  Q
    |||||||||  || |||||||||| ||||||||||||||||||||||||||    
T  21266246 aagaaaaaacttaaagagagaaaactagggccggcttattggagagggaga 21266196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 23085376 - 23085326
Alignment:
Q  20 aagaaaaaatctagagagagaaaattagggccggcttattggagagggaga 70  Q
    |||| |||| |||||||||||||||||||| |||||| |||||||||||||    
T  23085376 aagagaaaacctagagagagaaaattagggtcggcttgttggagagggaga 23085326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 26583568 - 26583518
Alignment:
Q  20 aagaaaaaatctagagagagaaaattagggccggcttattggagagggaga 70  Q
    ||||||||| ||||| |||||||| |||||||||||| |||||||||||||    
T  26583568 aagaaaaaacctagaaagagaaaactagggccggcttgttggagagggaga 26583518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 42311134 - 42311084
Alignment:
Q  20 aagaaaaaatctagagagagaaaattagggccggcttattggagagggaga 70  Q
    |||| |||| |||||||||||||||||||| |||||| |||||||||||||    
T  42311134 aagagaaaacctagagagagaaaattagggtcggcttgttggagagggaga 42311084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 22928093 - 22928138
Alignment:
Q  20 aagaaaaaatctagagagagaaaattagggccggcttattggagag 65  Q
    |||| |||| ||||||||||||||||||||||||||| ||||||||    
T  22928093 aagagaaaacctagagagagaaaattagggccggcttgttggagag 22928138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 46821868 - 46821819
Alignment:
Q  20 aagaaaaaatctagagagagaaaattagggccggcttattggagagggag 69  Q
    |||| |||| |||||||||||||| |||||||||||| ||||||||||||    
T  46821868 aagagaaaacctagagagagaaaactagggccggcttgttggagagggag 46821819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 9619581 - 9619631
Alignment:
Q  20 aagaaaaaatctagagagagaaaattagggccggcttattggagagggaga 70  Q
    |||| ||||||||||||||||||| ||| |||||||| |||||||||||||    
T  9619581 aagagaaaatctagagagagaaaactagagccggcttgttggagagggaga 9619631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 11725546 - 11725506
Alignment:
Q  17 tgaaagaaaaaatctagagagagaaaattagggccggctta 57  Q
    ||||||| ||||||||||||||||||| |||||||||||||    
T  11725546 tgaaagagaaaatctagagagagaaaactagggccggctta 11725506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 69
Target Start/End: Complemental strand, 29777085 - 29777041
Alignment:
Q  25 aaaatctagagagagaaaattagggccggcttattggagagggag 69  Q
    |||| ||||||||||||||||||||||| ||| ||||||||||||    
T  29777085 aaaacctagagagagaaaattagggccgacttgttggagagggag 29777041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 33895943 - 33895903
Alignment:
Q  20 aagaaaaaatctagagagagaaaattagggccggcttattg 60  Q
    |||| |||| |||||||||||||||||||||||||||||||    
T  33895943 aagagaaaacctagagagagaaaattagggccggcttattg 33895903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 34 - 69
Target Start/End: Complemental strand, 19876064 - 19876029
Alignment:
Q  34 agagagaaaattagggccggcttattggagagggag 69  Q
    ||||||||||||||||||||||| ||||||||||||    
T  19876064 agagagaaaattagggccggcttgttggagagggag 19876029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 44100153 - 44100200
Alignment:
Q  18 gaaagaaaaaatctagagagagaaaattagggccggcttattggagag 65  Q
    |||||| |||| |||||||||||||| |||||||||||| ||||||||    
T  44100153 gaaagagaaaacctagagagagaaaactagggccggcttgttggagag 44100200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 14907147 - 14907197
Alignment:
Q  20 aagaaaaaatctagagagagaaaattagggccggcttattggagagggaga 70  Q
    |||| |||| |||||||||||||| ||||| ||||||||| ||||||||||    
T  14907147 aagagaaaacctagagagagaaaactagggtcggcttattagagagggaga 14907197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 11196753 - 11196704
Alignment:
Q  20 aagaaaaaatctagagagagaaaattagggccggcttattggagagggag 69  Q
    |||| |||| |||||||||||||| ||||||| |||| ||||||||||||    
T  11196753 aagagaaaaactagagagagaaaactagggccagcttgttggagagggag 11196704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 25064089 - 25064039
Alignment:
Q  20 aagaaaaaatctagagagagaaaattagggccggcttattggagagggaga 70  Q
    |||| |||| |||||||||||||| |||||||||||| |||||||||||||    
T  25064089 aagagaaaacctagagagagaaaactagggccggcttgttggagagggaga 25064039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 70
Target Start/End: Complemental strand, 16419008 - 16418963
Alignment:
Q  25 aaaatctagagagagaaaattagggccggcttattggagagggaga 70  Q
    |||| ||||||||||||||||| ||||||||| |||||||||||||    
T  16419008 aaaacctagagagagaaaattaaggccggcttgttggagagggaga 16418963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 8496819 - 8496769
Alignment:
Q  20 aagaaaaaatctagagagagaaaattagggccggcttattggagagggaga 70  Q
    |||| |||| |||||||||||||| |||| ||| |||||||||||||||||    
T  8496819 aagagaaaacctagagagagaaaactaggaccgacttattggagagggaga 8496769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 17334630 - 17334582
Alignment:
Q  20 aagaaaaaatctagagagagaaaattagggccggcttattggagagggag 69  Q
    |||| ||||||||||||||||||| ||||| ||| |||||||||||||||    
T  17334630 aagagaaaatctagagagagaaaa-tagggtcggtttattggagagggag 17334582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 23947540 - 23947589
Alignment:
Q  20 aagaaaaaatctagagagagaaaattagggccggcttattggagagggag 69  Q
    ||||||||| |||||||||||||| ||||| |||||| ||||| ||||||    
T  23947540 aagaaaaaacctagagagagaaaactagggtcggcttgttggatagggag 23947589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 70
Target Start/End: Original strand, 19281172 - 19281217
Alignment:
Q  25 aaaatctagagagagaaaattagggccggcttattggagagggaga 70  Q
    |||| ||||||||||||||||||||||| ||| |||||||||||||    
T  19281172 aaaacctagagagagaaaattagggccgacttgttggagagggaga 19281217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 42579734 - 42579684
Alignment:
Q  20 aagaaaaaatctagagagagaaaattagggccggcttattggagagggaga 70  Q
    |||| |||| |||||||||||||| |||||| ||||| |||||||||||||    
T  42579734 aagagaaaacctagagagagaaaactagggcgggcttgttggagagggaga 42579684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 71
Target Start/End: Original strand, 19260045 - 19260082
Alignment:
Q  34 agagagaaaattagggccggcttattggagagggagaa 71  Q
    ||||||||||||||||||||||| |||||| |||||||    
T  19260045 agagagaaaattagggccggcttgttggagtgggagaa 19260082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 36344712 - 36344757
Alignment:
Q  20 aagaaaaaatctagagagagaaaattagggccggcttattggagag 65  Q
    |||| |||||||||||||| ||||||||||||| ||| ||||||||    
T  36344712 aagagaaaatctagagagaaaaaattagggccgacttgttggagag 36344757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 41184667 - 41184712
Alignment:
Q  20 aagaaaaaatctagagagagaaaattagggccggcttattggagag 65  Q
    |||| |||| ||||||| ||||||||||||||||||| ||||||||    
T  41184667 aagagaaaacctagagaaagaaaattagggccggcttgttggagag 41184712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 52
Target Start/End: Original strand, 3271629 - 3271661
Alignment:
Q  20 aagaaaaaatctagagagagaaaattagggccg 52  Q
    |||||||||| ||||||||||||||||||||||    
T  3271629 aagaaaaaatttagagagagaaaattagggccg 3271661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 56
Target Start/End: Complemental strand, 7241639 - 7241603
Alignment:
Q  20 aagaaaaaatctagagagagaaaattagggccggctt 56  Q
    |||| |||| |||||||||||||||||||||||||||    
T  7241639 aagagaaaacctagagagagaaaattagggccggctt 7241603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 56
Target Start/End: Complemental strand, 7246815 - 7246779
Alignment:
Q  20 aagaaaaaatctagagagagaaaattagggccggctt 56  Q
    |||| |||| |||||||||||||||||||||||||||    
T  7246815 aagagaaaacctagagagagaaaattagggccggctt 7246779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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