View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17151_low_3 (Length: 356)
Name: NF17151_low_3
Description: NF17151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17151_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 16 - 293
Target Start/End: Complemental strand, 23022861 - 23022584
Alignment:
| Q |
16 |
caataactataagtatgagggagaaaaataggttggtaatacaatccctctttttacattatgctttcttataagattttcaacacaaggttttgtactt |
115 |
Q |
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| T |
23022861 |
caataactataagtatgagggagaaaaataggttagtaatacaatccctctttttacattatgctttcttataagattttcaacacaaggttttgtactt |
23022762 |
T |
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| Q |
116 |
gatctatctttgcactgtaccttatttatcatattctgatcacattcaaaaggctctgattatatatatcaataaattgctgattttnnnnnnnttcaga |
215 |
Q |
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| T |
23022761 |
gatctatctttgcactgtaccttatttatcatattctgatcacattcaaaaggctctgattatatatatcaataaattactgatttaaaaaaaattcaga |
23022662 |
T |
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| Q |
216 |
tattaagattatatttacatccaatgttgtaattgtgtcaagatgcgatcccagcatttactgctagataaactataa |
293 |
Q |
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| T |
23022661 |
tattaagattatatttacatccaatgttgtaattgtgtcaagatgcgatcccagcattaactgctagataaactataa |
23022584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 73 - 166
Target Start/End: Complemental strand, 23032013 - 23031920
Alignment:
| Q |
73 |
attatgctttcttataagattttcaacacaaggttttgtacttgatctatctttgcactgtaccttatttatcatattctgatcacattcaaaa |
166 |
Q |
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| T |
23032013 |
attatgctttcttataatattttcaaaaaaaggctttcgatgcgatctatctttgaactgtattttatttatcatgttttgatcatattcaaaa |
23031920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 142
Target Start/End: Complemental strand, 23145353 - 23145275
Alignment:
| Q |
64 |
tctttttacattatgctttcttataagattttcaacacaaggttttgtacttgatctatctttgcactgtaccttattt |
142 |
Q |
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| T |
23145353 |
tctttttgcataatgctttctaataagattttcaacacaaggcttcggactaaatctatctttaaatcgtaccttattt |
23145275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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