View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17152_high_1 (Length: 906)

Name: NF17152_high_1
Description: NF17152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17152_high_1
NF17152_high_1
[»] chr7 (17 HSPs)
chr7 (11-234)||(25478133-25478356)
chr7 (241-344)||(22794833-22794936)
chr7 (241-335)||(44183973-44184067)
chr7 (241-306)||(26387659-26387724)
chr7 (11-127)||(25485146-25485262)
chr7 (235-306)||(3265330-3265401)
chr7 (241-301)||(14791499-14791559)
chr7 (245-301)||(37257638-37257694)
chr7 (25-144)||(25638251-25638370)
chr7 (235-284)||(37814606-37814655)
chr7 (229-297)||(38391995-38392063)
chr7 (235-302)||(7359271-7359338)
chr7 (242-288)||(33138584-33138630)
chr7 (235-301)||(37481564-37481630)
chr7 (235-332)||(28731079-28731176)
chr7 (256-301)||(36207451-36207496)
chr7 (245-301)||(47230608-47230665)
[»] chr4 (22 HSPs)
chr4 (241-338)||(37061962-37062059)
chr4 (235-347)||(8037848-8037960)
chr4 (241-347)||(41580276-41580382)
chr4 (241-343)||(36908374-36908477)
chr4 (256-347)||(37734957-37735048)
chr4 (256-305)||(35415739-35415788)
chr4 (241-300)||(38673086-38673145)
chr4 (235-301)||(30508780-30508846)
chr4 (271-343)||(45273400-45273472)
chr4 (255-306)||(24993313-24993364)
chr4 (250-300)||(35196743-35196793)
chr4 (256-305)||(7259777-7259826)
chr4 (241-301)||(26947190-26947250)
chr4 (241-347)||(43754796-43754899)
chr4 (256-306)||(4965122-4965172)
chr4 (235-300)||(26910688-26910753)
chr4 (245-301)||(1913948-1914004)
chr4 (251-306)||(47006102-47006157)
chr4 (235-301)||(44434048-44434114)
chr4 (238-287)||(9516290-9516339)
chr4 (235-268)||(26910767-26910800)
chr4 (238-302)||(52741570-52741637)
[»] chr6 (13 HSPs)
chr6 (241-345)||(13210237-13210341)
chr6 (241-347)||(19636242-19636348)
chr6 (241-312)||(19636439-19636510)
chr6 (284-347)||(19248361-19248424)
chr6 (247-301)||(18688966-18689020)
chr6 (245-306)||(6560257-6560318)
chr6 (235-302)||(19254978-19255045)
chr6 (256-307)||(26472677-26472728)
chr6 (256-343)||(34707379-34707466)
chr6 (235-273)||(12835534-12835572)
chr6 (235-296)||(10663887-10663948)
chr6 (235-291)||(7302671-7302727)
chr6 (257-306)||(26281103-26281152)
[»] chr3 (18 HSPs)
chr3 (235-347)||(459144-459256)
chr3 (241-347)||(34816626-34816732)
chr3 (241-347)||(51460122-51460228)
chr3 (238-306)||(38207315-38207383)
chr3 (276-348)||(42676918-42676990)
chr3 (246-315)||(5163977-5164046)
chr3 (241-301)||(37479392-37479452)
chr3 (235-304)||(35570578-35570647)
chr3 (241-301)||(16106334-16106394)
chr3 (256-302)||(21452775-21452821)
chr3 (256-302)||(21457949-21457995)
chr3 (229-295)||(35508418-35508484)
chr3 (260-306)||(49828206-49828252)
chr3 (449-502)||(27011962-27012015)
chr3 (245-306)||(52659950-52660010)
chr3 (256-301)||(1815259-1815304)
chr3 (260-305)||(12010827-12010872)
chr3 (241-298)||(22989198-22989255)
[»] chr8 (7 HSPs)
chr8 (245-347)||(25487506-25487608)
chr8 (235-300)||(9280569-9280634)
chr8 (235-306)||(12468888-12468959)
chr8 (256-305)||(10658618-10658667)
chr8 (252-305)||(24585605-24585658)
chr8 (229-273)||(2100956-2101000)
chr8 (235-305)||(35205461-35205531)
[»] chr2 (12 HSPs)
chr2 (233-305)||(1576461-1576533)
chr2 (244-347)||(19064256-19064359)
chr2 (238-306)||(16427799-16427867)
chr2 (241-344)||(27002474-27002577)
chr2 (11-143)||(35054306-35054438)
chr2 (240-347)||(8063015-8063122)
chr2 (256-302)||(5760437-5760483)
chr2 (235-289)||(12516659-12516713)
chr2 (449-502)||(44247109-44247162)
chr2 (241-331)||(19427797-19427885)
chr2 (664-707)||(26674942-26674985)
chr2 (261-306)||(37141226-37141271)
[»] chr1 (17 HSPs)
chr1 (235-343)||(44558000-44558108)
chr1 (241-347)||(11330939-11331045)
chr1 (241-347)||(11488960-11489066)
chr1 (238-302)||(21822933-21822997)
chr1 (235-347)||(24855115-24855227)
chr1 (241-348)||(5207598-5207705)
chr1 (259-343)||(22771344-22771429)
chr1 (259-343)||(23077138-23077223)
chr1 (257-306)||(21781233-21781282)
chr1 (241-320)||(41910035-41910114)
chr1 (241-304)||(42048468-42048531)
chr1 (230-288)||(36523717-36523775)
chr1 (241-306)||(16910041-16910106)
chr1 (414-473)||(24019993-24020053)
chr1 (241-301)||(40491139-40491199)
chr1 (235-305)||(50302579-50302649)
chr1 (256-305)||(10423046-10423095)
[»] chr5 (17 HSPs)
chr5 (241-324)||(12891469-12891552)
chr5 (257-306)||(20895408-20895457)
chr5 (238-306)||(20906270-20906338)
chr5 (241-300)||(17540948-17541007)
chr5 (235-306)||(34873504-34873575)
chr5 (235-298)||(36879993-36880056)
chr5 (241-347)||(24229411-24229517)
chr5 (257-306)||(20919570-20919619)
chr5 (235-299)||(29048622-29048686)
chr5 (234-305)||(37866908-37866979)
chr5 (229-302)||(32746350-32746423)
chr5 (235-343)||(9035348-9035456)
chr5 (235-273)||(42519486-42519524)
chr5 (235-306)||(4799649-4799720)
chr5 (259-301)||(9474857-9474899)
chr5 (260-302)||(29814068-29814110)
chr5 (235-301)||(35503541-35503607)
[»] scaffold0265 (1 HSPs)
scaffold0265 (238-302)||(9812-9876)
[»] scaffold0061 (1 HSPs)
scaffold0061 (260-306)||(63620-63666)
[»] scaffold0017 (1 HSPs)
scaffold0017 (260-306)||(134966-135012)
[»] scaffold0002 (2 HSPs)
scaffold0002 (256-298)||(427594-427636)
scaffold0002 (235-281)||(427639-427685)


Alignment Details
Target: chr7 (Bit Score: 77; Significance: 3e-35; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 11 - 234
Target Start/End: Original strand, 25478133 - 25478356
Alignment:
Q  11 catcatcatctgaacttagttttaaaagacattctaatgcttgtacttgaggttgtattccaataagttcatcagctgtacctaagaatttatgacccaa 110  Q
    ||||||||||||||||||||| ||| | | |||||||| ||| |||| ||| ||||||||| || || ||||||||   |||| |||| |||||||||||    
T  25478133 catcatcatctgaacttagttctaacataaattctaattcttctactcgagtttgtattccgatcaggtcatcagcaaaacctgagaacttatgacccaa 25478232  T
Q  111 cttttttatgacagcctggacaatactttcaatcgtcttatattctggcctaaaagaagcaaaagtcactaaattattattattaaccaatgaaaataag 210  Q
    ||||| ||| ||||||||||||||| |||||||||  |||||||||| ||| || | || |||| |||||||||||||||  ||||  ||||||||||||    
T  25478233 cttttctattacagcctggacaataatttcaatcgctttatattctgacctgaatgcag-aaaaatcactaaattattatagttaaagaatgaaaataag 25478331  T
Q  211 g-ggaaatttgaaatagatgtttag 234  Q
    | | ||||||| |||| ||||||||    
T  25478332 gtgaaaatttggaatatatgtttag 25478356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 241 - 344
Target Start/End: Original strand, 22794833 - 22794936
Alignment:
Q  241 tttgcacacacaactaatcaaaacatttagaatcgtcacatcaattaatgtttttaatttacgtgggtcaaacgtagcaattcagaatgttttgattgat 340  Q
    |||||||||||||| ||||||||||||  |||||| || ||||||||||| ||| |||||| ||| |||||||||| ||||| ||||||||||||||| |    
T  22794833 tttgcacacacaaccaatcaaaacattctgaatcgccatatcaattaatgatttcaatttatgtgtgtcaaacgtaacaattaagaatgttttgattggt 22794932  T
Q  341 tgtg 344  Q
    ||||    
T  22794933 tgtg 22794936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 241 - 335
Target Start/End: Complemental strand, 44184067 - 44183973
Alignment:
Q  241 tttgcacacacaactaatcaaaacatttagaatcgtcacatcaattaatgtttttaatttacgtgggtcaaacgtagcaattcagaatgttttga 335  Q
    |||||||||||||| ||||||||||||  |||| |||||||||||||||| |||||||||| ||||  |||||||  ||||||||||||||||||    
T  44184067 tttgcacacacaaccaatcaaaacattctgaattgtcacatcaattaatgattttaatttatgtggaccaaacgtgacaattcagaatgttttga 44183973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 241 - 306
Target Start/End: Complemental strand, 26387724 - 26387659
Alignment:
Q  241 tttgcacacacaactaatcaaaacatttagaatcgtcacatcaattaatgtttttaatttacgtgg 306  Q
    |||||||||||||| |||||||||||||| ||| |||||||||||||||||||||| |||| ||||    
T  26387724 tttgcacacacaaccaatcaaaacatttaaaattgtcacatcaattaatgtttttagtttatgtgg 26387659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 11 - 127
Target Start/End: Complemental strand, 25485262 - 25485146
Alignment:
Q  11 catcatcatctgaacttagttttaaaagacattctaatgcttgtacttgaggttgtattccaataagttcatcagctgtacctaagaatttatgacccaa 110  Q
    ||||||| ||||||||||||||||||||    |||||||||| ||  |||||||||||||||||||| |||||||  |  ||| ||||| |  |||||||    
T  25485262 catcatcctctgaacttagttttaaaaggttctctaatgcttctatatgaggttgtattccaataaggtcatcagtggatcctgagaatgtgcgacccaa 25485163  T
Q  111 cttttttatgacagcct 127  Q
    ||||||||| |||||||    
T  25485162 cttttttattacagcct 25485146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 235 - 306
Target Start/End: Complemental strand, 3265401 - 3265330
Alignment:
Q  235 aacaactttgcacacacaactaatcaaaacatttagaatcgtcacatcaattaatgtttttaatttacgtgg 306  Q
    ||||| |||||||||| ||| ||| |||| ||||||||| ||||||||||||||||||||||||||| ||||    
T  3265401 aacaattttgcacacataaccaattaaaatatttagaattgtcacatcaattaatgtttttaatttatgtgg 3265330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 241 - 301
Target Start/End: Original strand, 14791499 - 14791559
Alignment:
Q  241 tttgcacacacaactaatcaaaacatttagaatcgtcacatcaattaatgtttttaattta 301  Q
    |||||||||| |||||||| ||||| |||||||||| ||||||||| ||||||||||||||    
T  14791499 tttgcacacataactaatctaaacacttagaatcgtaacatcaattcatgtttttaattta 14791559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 245 - 301
Target Start/End: Complemental strand, 37257694 - 37257638
Alignment:
Q  245 cacacacaactaatcaaaacatttagaatcgtcacatcaattaatgtttttaattta 301  Q
    |||||||||| |||||||||||| ||||||  |||||||||||||||||||||||||    
T  37257694 cacacacaaccaatcaaaacattcagaatccccacatcaattaatgtttttaattta 37257638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 144
Target Start/End: Complemental strand, 25638370 - 25638251
Alignment:
Q  25 cttagttttaaaagacattctaatgcttgtacttgaggttgtattccaataagttcatcagctgtaccta-agaatttatgacccaacttttttatgaca 123  Q
    |||||||||| | |||  |||||||||| ||   ||||||||||||||||||| |||||||| | ||||  |||||||||||||||| |||||||| |||    
T  25638370 cttagttttagacgactctctaatgcttctataggaggttgtattccaataagatcatcagcag-acctggagaatttatgacccaatttttttatcaca 25638272  T
Q  124 gcctggacaatactttcaatc 144  Q
    ||||  |||||  ||||||||    
T  25638271 gcctcaacaattttttcaatc 25638251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 235 - 284
Target Start/End: Original strand, 37814606 - 37814655
Alignment:
Q  235 aacaactttgcacacacaactaatcaaaacatttagaatcgtcacatcaa 284  Q
    ||||| |||||||||||||  |||||||||||||| ||||||||||||||    
T  37814606 aacaaatttgcacacacaatcaatcaaaacatttaaaatcgtcacatcaa 37814655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 229 - 297
Target Start/End: Original strand, 38391995 - 38392063
Alignment:
Q  229 gtttagaacaactttgcacacacaactaatcaaaacatttagaatcgtcacatcaattaatgtttttaa 297  Q
    ||||| ||||| |||||||||||||| ||| |||||| | | ||| ||||||||||| |||||||||||    
T  38391995 gtttaaaacaattttgcacacacaaccaattaaaacactcaaaattgtcacatcaatgaatgtttttaa 38392063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 235 - 302
Target Start/End: Original strand, 7359271 - 7359338
Alignment:
Q  235 aacaactttgcacacacaactaatcaaaacatttagaatcgtcacatcaattaatgtttttaatttac 302  Q
    ||||||||||| |||||||  ||| |||||||||| || |   |||||||||||||||||||||||||    
T  7359271 aacaactttgcgcacacaatcaattaaaacatttaaaaccactacatcaattaatgtttttaatttac 7359338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 242 - 288
Target Start/End: Original strand, 33138584 - 33138630
Alignment:
Q  242 ttgcacacacaactaatcaaaacatttagaatcgtcacatcaattaa 288  Q
    ||||||||||||| ||| |||||||||||||| ||||||| ||||||    
T  33138584 ttgcacacacaaccaattaaaacatttagaattgtcacataaattaa 33138630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 235 - 301
Target Start/End: Original strand, 37481564 - 37481630
Alignment:
Q  235 aacaactttgcacacacaactaatcaaaacatttagaatcgtcacatcaattaatgtttttaattta 301  Q
    |||||||||||||||||||| |||| || |||||| ||| | |||||||||| ||| ||||| ||||    
T  37481564 aacaactttgcacacacaaccaatctaatcatttaaaattgacacatcaattgatgattttagttta 37481630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 235 - 332
Target Start/End: Complemental strand, 28731176 - 28731079
Alignment:
Q  235 aacaactttgcacacacaactaatcaaaacatttagaatcgtcacatcaattaatgtttttaatttacgtgggtcaaacgtagcaattcagaatgttt 332  Q
    ||||| |||||||| ||||  |||||||| |||  |||| || | ||||||||||  |||||||||| ||| ||||||| |  |||||||||||||||    
T  28731176 aacaattttgcacatacaatcaatcaaaagattctgaattgtgagatcaattaataattttaatttatgtgagtcaaacctgacaattcagaatgttt 28731079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 256 - 301
Target Start/End: Original strand, 36207451 - 36207496
Alignment:
Q  256 aatcaaaacatttagaatcgtcacatcaattaatgtttttaattta 301  Q
    |||||||| ||||| ||| | |||||||||||||||||||||||||    
T  36207451 aatcaaaatatttaaaattgccacatcaattaatgtttttaattta 36207496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 245 - 301
Target Start/End: Complemental strand, 47230665 - 47230608
Alignment:
Q  245 cacacacaactaatcaaaac-atttagaatcgtcacatcaattaatgtttttaattta 301  Q
    |||||||||| ||||||||  ||||||||| ||||||| |||||| ||||||||||||    
T  47230665 cacacacaaccaatcaaaaatatttagaattgtcacattaattaaagtttttaattta 47230608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 2e-33; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 241 - 338
Target Start/End: Original strand, 37061962 - 37062059
Alignment:
Q  241 tttgcacacacaactaatcaaaacatttagaatcgtcacatcaattaatgtttttaatttacgtgggtcaaacgtagcaattcagaatgttttgattg 338  Q
    |||||||||||||| |||||||||||||||||| |||||||||||||||| |||||||||| |||||||||||||  |||||||||||||||||||||    
T  37061962 tttgcacacacaaccaatcaaaacatttagaattgtcacatcaattaatgattttaatttatgtgggtcaaacgtgacaattcagaatgttttgattg 37062059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 235 - 347
Target Start/End: Complemental strand, 8037960 - 8037848
Alignment:
Q  235 aacaactttgcacacacaactaatcaaaacatttagaatcgtcacatcaattaatgtttttaatttacgtgggtcaaacgtagcaattcagaatgttttg 334  Q
    ||||||||||||||||| || |||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||| |  ||||||| |||||||||    
T  8037960 aacaactttgcacacacgaccaatcaaaatatttagaatcgccacatcaattaatatttttaatttacgtgggtcaaacatgacaattcataatgttttg 8037861  T
Q  335 attgattgtgtgt 347  Q
    || ||||||||||    
T  8037860 atagattgtgtgt 8037848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 241 - 347
Target Start/End: Complemental strand, 41580382 - 41580276
Alignment:
Q  241 tttgcacacacaactaatcaaaacatttagaatcgtcacatcaattaatgtttttaatttacgtgggtcaaacgtagcaattcagaatgttttgattgat 340  Q
    |||||||||||||| ||||||||||||  |||| |||| ||||||||||  || ||||||| ||||||||||||| |||||||| ||| ||||||| |||    
T  41580382 tttgcacacacaaccaatcaaaacattctgaattgtcatatcaattaataattgtaatttatgtgggtcaaacgtggcaattcataatattttgatcgat 41580283  T
Q  341 tgtgtgt 347  Q
    |||||||    
T  41580282 tgtgtgt 41580276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 241 - 343
Target Start/End: Complemental strand, 36908477 - 36908374
Alignment:
Q  241 tttgcacacacaactaatcaaaacatttagaatcgtcacatcaattaatgttttt-aatttacgtgggtcaaacgtagcaattcagaatgttttgattga 339  Q
    |||||||| ||||  ||||||||||||  |||| ||||||||||||||||||||| |||| ||||||| ||||| ||||||||||||||||||| ||||     
T  36908477 tttgcacaaacaatcaatcaaaacattctgaattgtcacatcaattaatgttttttaattaacgtgggccaaacatagcaattcagaatgttttaattgg 36908378  T
Q  340 ttgt 343  Q
    ||||    
T  36908377 ttgt 36908374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 256 - 347
Target Start/End: Complemental strand, 37735048 - 37734957
Alignment:
Q  256 aatcaaaacatttagaatcgtcacatcaattaatgtttttaatttacgtgggtcaaacgtagcaattcagaatgttttgattgattgtgtgt 347  Q
    ||||||||||||  |||| | |||||||||||||| |||||||||| ||||| |||| || |||||||||||||||||||||| ||||||||    
T  37735048 aatcaaaacattctgaattgacacatcaattaatgattttaatttatgtgggccaaatgtggcaattcagaatgttttgattggttgtgtgt 37734957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 256 - 305
Target Start/End: Complemental strand, 35415788 - 35415739
Alignment:
Q  256 aatcaaaacatttagaatcgtcacatcaattaatgtttttaatttacgtg 305  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  35415788 aatcataacatttagaatcgtcacatcaattaatgtttttaatttacgtg 35415739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 241 - 300
Target Start/End: Original strand, 38673086 - 38673145
Alignment:
Q  241 tttgcacacacaactaatcaaaacatttagaatcgtcacatcaattaatgtttttaattt 300  Q
    ||||||||||| ||||||||||||||||| ||| ||||||||||||||||||| ||||||    
T  38673086 tttgcacacactactaatcaaaacatttaaaattgtcacatcaattaatgtttataattt 38673145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 235 - 301
Target Start/End: Original strand, 30508780 - 30508846
Alignment:
Q  235 aacaactttgcacacacaactaatcaaaacatttagaatcgtcacatcaattaatgtttttaattta 301  Q
    |||||||||||||||||||  |||||||||||||| ||| | |||||| ||||||||||||||||||    
T  30508780 aacaactttgcacacacaatcaatcaaaacatttaaaattgccacatcgattaatgtttttaattta 30508846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 271 - 343
Target Start/End: Original strand, 45273400 - 45273472
Alignment:
Q  271 aatcgtcacatcaattaatgtttttaatttacgtgggtcaaacgtagcaattcagaatgttttgattgattgt 343  Q
    ||||| |||||||||||||| |||||||||| || ||  ||||| ||||||||||||||||||||||| ||||    
T  45273400 aatcgccacatcaattaatgattttaatttatgtaggctaaacgcagcaattcagaatgttttgattggttgt 45273472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 255 - 306
Target Start/End: Complemental strand, 24993364 - 24993313
Alignment:
Q  255 taatcaaaacatttagaatcgtcacatcaattaatgtttttaatttacgtgg 306  Q
    |||| |||||||||||||| ||||||||| ||||||||||||||||||||||    
T  24993364 taataaaaacatttagaattgtcacatcatttaatgtttttaatttacgtgg 24993313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 250 - 300
Target Start/End: Complemental strand, 35196793 - 35196743
Alignment:
Q  250 acaactaatcaaaacatttagaatcgtcacatcaattaatgtttttaattt 300  Q
    ||||| |||||||||||||||||| | ||||||||||||||||||||||||    
T  35196793 acaaccaatcaaaacatttagaattgacacatcaattaatgtttttaattt 35196743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 256 - 305
Target Start/End: Original strand, 7259777 - 7259826
Alignment:
Q  256 aatcaaaacatttagaatcgtcacatcaattaatgtttttaatttacgtg 305  Q
    |||||||||||||||||| |||| |||||||||| |||||||||||||||    
T  7259777 aatcaaaacatttagaattgtcatatcaattaatatttttaatttacgtg 7259826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 241 - 301
Target Start/End: Complemental strand, 26947250 - 26947190
Alignment:
Q  241 tttgcacacacaactaatcaaaacatttagaatcgtcacatcaattaatgtttttaattta 301  Q
    |||||||||| ||| |||||||| |||| |||||| |||||||||||||| ||||||||||    
T  26947250 tttgcacacataaccaatcaaaatattttgaatcgccacatcaattaatgattttaattta 26947190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 241 - 347
Target Start/End: Original strand, 43754796 - 43754899
Alignment:
Q  241 tttgcacacacaactaatcaaaacatttagaatcgtcacatcaattaatgtttttaatttacgtgggtcaaacgtagcaattcagaatgttttgattgat 340  Q
    |||||||||||||| ||||||||||||  ||||  |||| |||||||||  |||||||||| ||| ||||||| |  |||||   ||||||||||||| |    
T  43754796 tttgcacacacaaccaatcaaaacattctgaattatcacgtcaattaattattttaatttatgtgtgtcaaacatgacaatt---aatgttttgattggt 43754892  T
Q  341 tgtgtgt 347  Q
    |||||||    
T  43754893 tgtgtgt 43754899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 256 - 306
Target Start/End: Original strand, 4965122 - 4965172
Alignment:
Q  256 aatcaaaacatttagaatcgtcacatcaattaatgtttttaatttacgtgg 306  Q
    |||||||| ||||| ||||||||||||||||||| || |||||||||||||    
T  4965122 aatcaaaatatttataatcgtcacatcaattaatattgttaatttacgtgg 4965172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 235 - 300
Target Start/End: Original strand, 26910688 - 26910753
Alignment:
Q  235 aacaactttgcacacacaactaatcaaaacatttagaatcgtcacatcaattaatgtttttaattt 300  Q
    ||||||||| |||| ||||  |||||| ||||||| |||||||||||| ||||||||||| |||||    
T  26910688 aacaactttacacatacaatcaatcaagacatttaaaatcgtcacatcgattaatgttttaaattt 26910753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 245 - 301
Target Start/End: Original strand, 1913948 - 1914004
Alignment:
Q  245 cacacacaactaatcaaaacatttagaatcgtcacatcaattaatgtttttaattta 301  Q
    |||||||||  |||||||| ||||| ||| |||||||||||| ||||||||||||||    
T  1913948 cacacacaatcaatcaaaatatttataattgtcacatcaatttatgtttttaattta 1914004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 251 - 306
Target Start/End: Original strand, 47006102 - 47006157
Alignment:
Q  251 caactaatcaaaacatttagaatcgtcacatcaattaatgtttttaatttacgtgg 306  Q
    |||| |||||||| ||||||||| |||| ||||| |||||||||||||||| ||||    
T  47006102 caaccaatcaaaatatttagaattgtcatatcaactaatgtttttaatttatgtgg 47006157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 235 - 301
Target Start/End: Complemental strand, 44434114 - 44434048
Alignment:
Q  235 aacaactttgcacacacaactaatcaaaacatttagaatcgtcacatcaattaatgtttttaattta 301  Q
    ||||| || ||||||||||  |||||||||||||||| | ||||||| ||| ||| |||||||||||    
T  44434114 aacaatttcgcacacacaatcaatcaaaacatttagagttgtcacattaataaatatttttaattta 44434048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 238 - 287
Target Start/End: Complemental strand, 9516339 - 9516290
Alignment:
Q  238 aactttgcacacacaactaatcaaaacatttagaatcgtcacatcaatta 287  Q
    ||||||||||||||||| |||||||||| |||||||  |||||| |||||    
T  9516339 aactttgcacacacaaccaatcaaaacacttagaattatcacattaatta 9516290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 235 - 268
Target Start/End: Complemental strand, 26910800 - 26910767
Alignment:
Q  235 aacaactttgcacacacaactaatcaaaacattt 268  Q
    ||||||||||||||||||| ||||||||||||||    
T  26910800 aacaactttgcacacacaagtaatcaaaacattt 26910767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 238 - 302
Target Start/End: Original strand, 52741570 - 52741637
Alignment:
Q  238 aactttgcacacacaactaatcaaaacatttagaatcgtcacatcaat---taatgtttttaatttac 302  Q
    ||||||||||| ||||| || |||||||||||||||  |||| |||||   |||||||||||||||||    
T  52741570 aactttgcacatacaaccaaacaaaacatttagaattatcacgtcaattaataatgtttttaatttac 52741637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 1e-25; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 241 - 345
Target Start/End: Complemental strand, 13210341 - 13210237
Alignment:
Q  241 tttgcacacacaactaatcaaaacatttagaatcgtcacatcaattaatgtttttaatttacgtgggtcaaacgtagcaattcagaatgttttgattgat 340  Q
    ||||||||||||||| ||||||||||||  ||||| || ||||||||||  |||||||||| ||||||||||||| |||||||| ||| |||||||||||    
T  13210341 tttgcacacacaactgatcaaaacattttcaatcgccatatcaattaattattttaatttatgtgggtcaaacgtggcaattcaaaatattttgattgat 13210242  T
Q  341 tgtgt 345  Q
    |||||    
T  13210241 tgtgt 13210237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 241 - 347
Target Start/End: Original strand, 19636242 - 19636348
Alignment:
Q  241 tttgcacacacaactaatcaaaacatttagaatcgtcacatcaattaatgtttttaatttacgtgggtcaaacgtagcaattcagaatgttttgattgat 340  Q
    |||||| ||||||| ||||||||||||||||||||  ||||||||||||  ||||||| || |||||||||||||  |||| |||||| ||||||||| |    
T  19636242 tttgcaaacacaaccaatcaaaacatttagaatcgcgacatcaattaataattttaatctatgtgggtcaaacgtgacaatgcagaatattttgattggt 19636341  T
Q  341 tgtgtgt 347  Q
    |||||||    
T  19636342 tgtgtgt 19636348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 241 - 312
Target Start/End: Original strand, 19636439 - 19636510
Alignment:
Q  241 tttgcacacacaactaatcaaaacatttagaatcgtcacatcaattaatgtttttaatttacgtgggtcaaa 312  Q
    |||||||||| ||| |||||||||||||||||||| |||||||||||||| |||||||||| ||||| ||||    
T  19636439 tttgcacacagaaccaatcaaaacatttagaatcgccacatcaattaatgattttaatttatgtgggccaaa 19636510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 284 - 347
Target Start/End: Complemental strand, 19248424 - 19248361
Alignment:
Q  284 attaatgtttttaatttacgtgggtcaaacgtagcaattcagaatgttttgattgattgtgtgt 347  Q
    ||||||| |||||||||| |||||||||| || |||||||||||| ||||||||||||||||||    
T  19248424 attaatgattttaatttatgtgggtcaaatgtggcaattcagaatattttgattgattgtgtgt 19248361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 247 - 301
Target Start/End: Complemental strand, 18689020 - 18688966
Alignment:
Q  247 cacacaactaatcaaaacatttagaatcgtcacatcaattaatgtttttaattta 301  Q
    |||||||| |||||||||||||| ||| |||||||||||||||||||||||||||    
T  18689020 cacacaaccaatcaaaacatttaaaattgtcacatcaattaatgtttttaattta 18688966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 245 - 306
Target Start/End: Complemental strand, 6560318 - 6560257
Alignment:
Q  245 cacacacaactaatcaaaacatttagaatcgtcacatcaattaatgtttttaatttacgtgg 306  Q
    |||||||||  ||| |||| |||||||||||||||||||||||||| |||||||||||||||    
T  6560318 cacacacaatcaattaaaatatttagaatcgtcacatcaattaatgattttaatttacgtgg 6560257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 235 - 302
Target Start/End: Complemental strand, 19255045 - 19254978
Alignment:
Q  235 aacaactttgcacacacaactaatcaaaacatttagaatcgtcacatcaattaatgtttttaatttac 302  Q
    ||||| |||||||||||||| |||||||||||| ||||| | |||||||||||||  |||||||||||    
T  19255045 aacaattttgcacacacaaccaatcaaaacattcagaattgccacatcaattaattgttttaatttac 19254978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 256 - 307
Target Start/End: Complemental strand, 26472728 - 26472677
Alignment:
Q  256 aatcaaaacatttagaatcgtcacatcaattaatgtttttaatttacgtggg 307  Q
    ||||||||||||| |||| ||||||||| |||||||||||||||||||||||    
T  26472728 aatcaaaacattttgaattgtcacatcacttaatgtttttaatttacgtggg 26472677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 256 - 343
Target Start/End: Complemental strand, 34707466 - 34707379
Alignment:
Q  256 aatcaaaacatttagaatcgtcacatcaattaatgtttttaatttacgtgggtcaaacgtagcaattcagaatgttttgattgattgt 343  Q
    |||||||||||||||||||  |||||||||||| | |||||||| |  |||  ||||||| || ||||||||| ||||||||| ||||    
T  34707466 aatcaaaacatttagaatcaccacatcaattaacgattttaattcatatggaccaaacgtggcgattcagaatattttgattggttgt 34707379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 235 - 273
Target Start/End: Original strand, 12835534 - 12835572
Alignment:
Q  235 aacaactttgcacacacaactaatcaaaacatttagaat 273  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  12835534 aacaactttgcacacacaattaatcaaaacatttagaat 12835572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 235 - 296
Target Start/End: Original strand, 10663887 - 10663948
Alignment:
Q  235 aacaactttgcacacacaactaatcaaaacatttagaatcgtcacatcaattaatgttttta 296  Q
    ||||||| | |||| ||||| |||||||||||||||||| | ||||||| ||||||||||||    
T  10663887 aacaactatacacatacaaccaatcaaaacatttagaattgccacatcatttaatgttttta 10663948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 235 - 291
Target Start/End: Complemental strand, 7302727 - 7302671
Alignment:
Q  235 aacaactttgcacacacaactaatcaaaacatttagaatcgtcacatcaattaatgt 291  Q
    ||||| |||| ||| ||||||||||||||||||||||||  |||||| |||||||||    
T  7302727 aacaaatttggacatacaactaatcaaaacatttagaattatcacattaattaatgt 7302671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 257 - 306
Target Start/End: Complemental strand, 26281152 - 26281103
Alignment:
Q  257 atcaaaacatttagaatcgtcacatcaattaatgtttttaatttacgtgg 306  Q
    |||||||||||||||||   |||||| |||||||||| ||||||||||||    
T  26281152 atcaaaacatttagaattaccacatcgattaatgtttctaatttacgtgg 26281103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 3e-23; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 235 - 347
Target Start/End: Complemental strand, 459256 - 459144
Alignment:
Q  235 aacaactttgcacacacaactaatcaaaacatttagaatcgtcacatcaattaatgtttttaatttacgtgggtcaaacgtagcaattcagaatgttttg 334  Q
    |||||||||| ||||||||  |||||||||||||| ||||  | ||| ||||||| |||||||||||||||||||||| || || ||||  |||||||||    
T  459256 aacaactttgaacacacaatcaatcaaaacatttataatcaccgcattaattaatatttttaatttacgtgggtcaaaagtggcgattctaaatgttttg 459157  T
Q  335 attgattgtgtgt 347  Q
    |||||||||||||    
T  459156 attgattgtgtgt 459144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 241 - 347
Target Start/End: Complemental strand, 34816732 - 34816626
Alignment:
Q  241 tttgcacacacaactaatcaaaacatttagaatcgtcacatcaattaatgtttttaatttacgtgggtcaaacgtagcaattcagaatgttttgattgat 340  Q
    |||||||| ||||| ||||||||||||  |||| | |||||||||||||| |||||||||| |||| |||||| | |||||||| ||| |||||||||||    
T  34816732 tttgcacatacaaccaatcaaaacattctgaattgccacatcaattaatgattttaatttatgtggatcaaacatggcaattcataatattttgattgat 34816633  T
Q  341 tgtgtgt 347  Q
    |||||||    
T  34816632 tgtgtgt 34816626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 241 - 347
Target Start/End: Complemental strand, 51460228 - 51460122
Alignment:
Q  241 tttgcacacacaactaatcaaaacatttagaatcgtcacatcaattaatgtttttaatttacgtgggtcaaacgtagcaattcagaatgttttgattgat 340  Q
    |||||||| | ||| ||||||||||||  |||| |||||||||||||||| |||||||||| |||| ||||| ||||||||||| ||| ||||||||| |    
T  51460228 tttgcacatataaccaatcaaaacattctgaattgtcacatcaattaatgattttaatttatgtggatcaaatgtagcaattcaaaatattttgattggt 51460129  T
Q  341 tgtgtgt 347  Q
    |||||||    
T  51460128 tgtgtgt 51460122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 238 - 306
Target Start/End: Complemental strand, 38207383 - 38207315
Alignment:
Q  238 aactttgcacacacaactaatcaaaacatttagaatcgtcacatcaattaatgtttttaatttacgtgg 306  Q
    |||||||||||||| || ||| |||||||||||||| ||||||||||||||||||||||||||| ||||    
T  38207383 aactttgcacacacgaccaataaaaacatttagaattgtcacatcaattaatgtttttaatttatgtgg 38207315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 276 - 348
Target Start/End: Original strand, 42676918 - 42676990
Alignment:
Q  276 tcacatcaattaatgtttttaatttacgtgggtcaaacgtagcaattcagaatgttttgattgattgtgtgta 348  Q
    ||||||||||||||| ||||||||||||||| |||||| | |||||||||||| ||||||||| |||||||||    
T  42676918 tcacatcaattaatgattttaatttacgtggatcaaacatggcaattcagaatattttgattggttgtgtgta 42676990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 246 - 315
Target Start/End: Complemental strand, 5164046 - 5163977
Alignment:
Q  246 acacacaactaatcaaaacatttagaatcgtcacatcaattaatgtttttaatttacgtgggtcaaacgt 315  Q
    ||||||||| |||||||||||||| |||||||| || |||||||| |||||||||| || ||||||||||    
T  5164046 acacacaaccaatcaaaacatttaaaatcgtcatattaattaatgattttaatttaagtaggtcaaacgt 5163977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 241 - 301
Target Start/End: Original strand, 37479392 - 37479452
Alignment:
Q  241 tttgcacacacaactaatcaaaacatttagaatcgtcacatcaattaatgtttttaattta 301  Q
    |||||||||||||| ||||||||| ||  |||||| |||||||||||||||||||||||||    
T  37479392 tttgcacacacaaccaatcaaaactttctgaatcgccacatcaattaatgtttttaattta 37479452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 235 - 304
Target Start/End: Original strand, 35570578 - 35570647
Alignment:
Q  235 aacaactttgcacacacaactaatcaaaacatttagaatcgtcacatcaattaatgtttttaatttacgt 304  Q
    ||||| ||| ||| |||||| |||||||||||||| ||| | ||||||||||||| ||||||||||||||    
T  35570578 aacaaatttacactcacaaccaatcaaaacatttaaaattgccacatcaattaatatttttaatttacgt 35570647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 241 - 301
Target Start/End: Complemental strand, 16106394 - 16106334
Alignment:
Q  241 tttgcacacacaactaatcaaaacatttagaatcgtcacatcaattaatgtttttaattta 301  Q
    |||||||||||||  ||||||||||||| |||||| ||||| |||| ||||||||||||||    
T  16106394 tttgcacacacaatcaatcaaaacatttcgaatcgccacattaatttatgtttttaattta 16106334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 256 - 302
Target Start/End: Original strand, 21452775 - 21452821
Alignment:
Q  256 aatcaaaacatttagaatcgtcacatcaattaatgtttttaatttac 302  Q
    ||||| |||||||| |||||||||||||| |||||||||||||||||    
T  21452775 aatcagaacatttaaaatcgtcacatcaaataatgtttttaatttac 21452821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 256 - 302
Target Start/End: Original strand, 21457949 - 21457995
Alignment:
Q  256 aatcaaaacatttagaatcgtcacatcaattaatgtttttaatttac 302  Q
    ||||| |||||||| |||||||||||||| |||||||||||||||||    
T  21457949 aatcagaacatttaaaatcgtcacatcaaataatgtttttaatttac 21457995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 229 - 295
Target Start/End: Complemental strand, 35508484 - 35508418
Alignment:
Q  229 gtttagaacaactttgcacacacaactaatcaaaacatttagaatcgtcacatcaattaatgttttt 295  Q
    ||||| || ||||||| ||||||||  |||||||||| ||||||| |||||||||||||||| ||||    
T  35508484 gtttaaaataactttgtacacacaatcaatcaaaacaattagaattgtcacatcaattaatgatttt 35508418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 260 - 306
Target Start/End: Complemental strand, 49828252 - 49828206
Alignment:
Q  260 aaaacatttagaatcgtcacatcaattaatgtttttaatttacgtgg 306  Q
    |||||||||||||| |||| || ||||||||||||||||||||||||    
T  49828252 aaaacatttagaattgtcatatgaattaatgtttttaatttacgtgg 49828206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 449 - 502
Target Start/End: Complemental strand, 27012015 - 27011962
Alignment:
Q  449 ggagtggaatgaaacggaatggaatagagatttcattcctttatttggatattt 502  Q
    ||||| ||||| |||||||||||||||||||| |||||| | ||||||||||||    
T  27012015 ggagttgaatggaacggaatggaatagagattacattccatcatttggatattt 27011962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 245 - 306
Target Start/End: Original strand, 52659950 - 52660010
Alignment:
Q  245 cacacacaactaatcaaaacatttagaatcgtcacatcaattaatgtttttaatttacgtgg 306  Q
    |||||||||| | |||||||||||||||| |  ||||||||||||| |||||||||||||||    
T  52659950 cacacacaaccactcaaaacatttagaattgctacatcaattaatg-ttttaatttacgtgg 52660010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 256 - 301
Target Start/End: Complemental strand, 1815304 - 1815259
Alignment:
Q  256 aatcaaaacatttagaatcgtcacatcaattaatgtttttaattta 301  Q
    |||||||| ||||||||||| ||||| ||||||| |||||||||||    
T  1815304 aatcaaaatatttagaatcgccacattaattaatatttttaattta 1815259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 260 - 305
Target Start/End: Complemental strand, 12010872 - 12010827
Alignment:
Q  260 aaaacatttagaatcgtcacatcaattaatgtttttaatttacgtg 305  Q
    |||||||||||||| |||| || ||||||| |||||||||||||||    
T  12010872 aaaacatttagaattgtcatatgaattaatatttttaatttacgtg 12010827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 241 - 298
Target Start/End: Original strand, 22989198 - 22989255
Alignment:
Q  241 tttgcacacacaactaatcaaaacatttagaatcgtcacatcaattaatgtttttaat 298  Q
    |||| |||||||| ||||||||||||||| |||   ||| ||||||||||||||||||    
T  22989198 tttgtacacacaattaatcaaaacatttaaaattaccacgtcaattaatgtttttaat 22989255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 4e-22; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 245 - 347
Target Start/End: Complemental strand, 25487608 - 25487506
Alignment:
Q  245 cacacacaactaatcaaaacatttagaatcgtcacatcaattaatgtttttaatttacgtgggtcaaacgtagcaattcagaatgttttgattgattgtg 344  Q
    |||||||||| ||||||||||||  |||| |||||||||||||||| |||||||||| |||||| ||||||  ||||||| ||| ||||||||| |||||    
T  25487608 cacacacaaccaatcaaaacattctgaattgtcacatcaattaatgattttaatttatgtgggttaaacgttacaattcataatattttgattggttgtg 25487509  T
Q  345 tgt 347  Q
    |||    
T  25487508 tgt 25487506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 235 - 300
Target Start/End: Original strand, 9280569 - 9280634
Alignment:
Q  235 aacaactttgcacacacaactaatcaaaacatttagaatcgtcacatcaattaatgtttttaattt 300  Q
    ||||||||||||||||||||  ||| ||||||||| ||| ||||||||||||||| ||||||||||    
T  9280569 aacaactttgcacacacaacctatctaaacatttaaaattgtcacatcaattaatatttttaattt 9280634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 235 - 306
Target Start/End: Complemental strand, 12468959 - 12468888
Alignment:
Q  235 aacaactttgcacacacaactaatcaaaacatttagaatcgtcacatcaattaatgtttttaatttacgtgg 306  Q
    ||||| |||||||| ||||||||| |||||||||| ||| |  |||||||||||||||||||||||| ||||    
T  12468959 aacaattttgcacatacaactaattaaaacatttaaaattgatacatcaattaatgtttttaatttaagtgg 12468888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 256 - 305
Target Start/End: Original strand, 10658618 - 10658667
Alignment:
Q  256 aatcaaaacatttagaatcgtcacatcaattaatgtttttaatttacgtg 305  Q
    |||||||||||||||| || ||||| ||||||||||||||||||||||||    
T  10658618 aatcaaaacatttagattcatcacaacaattaatgtttttaatttacgtg 10658667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 252 - 305
Target Start/End: Complemental strand, 24585658 - 24585605
Alignment:
Q  252 aactaatcaaaacatttagaatcgtcacatcaattaatgtttttaatttacgtg 305  Q
    |||||||||||||||||||||| |  | ||||||||||||||||||||||||||    
T  24585658 aactaatcaaaacatttagaattgctaaatcaattaatgtttttaatttacgtg 24585605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 229 - 273
Target Start/End: Complemental strand, 2101000 - 2100956
Alignment:
Q  229 gtttagaacaactttgcacacacaactaatcaaaacatttagaat 273  Q
    ||||| |||||||||||||||||||| ||||||| ||||||||||    
T  2101000 gtttaaaacaactttgcacacacaaccaatcaaatcatttagaat 2100956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 235 - 305
Target Start/End: Complemental strand, 35205531 - 35205461
Alignment:
Q  235 aacaactttgcacacacaactaatcaaaacatttagaatcgtcacatcaattaatgtttttaatttacgtg 305  Q
    ||||| |||||||| ||||| ||| |||||||||| |||   || ||||||||||| ||||||||||||||    
T  35205531 aacaattttgcacatacaacaaattaaaacatttaaaattaccatatcaattaatgcttttaatttacgtg 35205461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 6e-21; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 233 - 305
Target Start/End: Complemental strand, 1576533 - 1576461
Alignment:
Q  233 agaacaactttgcacacacaactaatcaaaacatttagaatcgtcacatcaattaatgtttttaatttacgtg 305  Q
    |||| ||||||||| |||||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  1576533 agaaaaactttgcatacacaactgatcaaaacatttataatcgtcacatcaaataatgtttttaatttacgtg 1576461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 244 - 347
Target Start/End: Complemental strand, 19064359 - 19064256
Alignment:
Q  244 gcacacacaactaatcaaaacatttagaatcgtcacatcaattaatgtttttaatttacgtgggtcaaacgtagcaattcagaatgttttgattgattgt 343  Q
    ||||||||||| ||||||||||||  |||| | |||||||||||||  |||||||||| ||||| ||||| |  |||||||||||||||||||||||||     
T  19064359 gcacacacaaccaatcaaaacattctgaattgccacatcaattaataattttaatttatgtgggccaaacatgacaattcagaatgttttgattgattgc 19064260  T
Q  344 gtgt 347  Q
    ||||    
T  19064259 gtgt 19064256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 238 - 306
Target Start/End: Original strand, 16427799 - 16427867
Alignment:
Q  238 aactttgcacacacaactaatcaaaacatttagaatcgtcacatcaattaatgtttttaatttacgtgg 306  Q
    ||||||| ||||||||  |||||||| ||||||||||| ||||||||||||||||||||| ||||||||    
T  16427799 aactttgtacacacaatcaatcaaaatatttagaatcgccacatcaattaatgtttttaagttacgtgg 16427867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 241 - 344
Target Start/End: Complemental strand, 27002577 - 27002474
Alignment:
Q  241 tttgcacacacaactaatcaaaacatttagaatcgtcacatcaattaatgtttttaatttacgtgggtcaaacgtagcaattcagaatgttttgattgat 340  Q
    |||||||| ||||  |||||||||||||||||||  ||||||||| |||| |||||||| |  |||  ||||||| |||||||||||| ||||||||| |    
T  27002577 tttgcacatacaatcaatcaaaacatttagaatcaccacatcaatgaatgattttaattcatatggaccaaacgtggcaattcagaatattttgattggt 27002478  T
Q  341 tgtg 344  Q
    ||||    
T  27002477 tgtg 27002474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 143
Target Start/End: Original strand, 35054306 - 35054438
Alignment:
Q  11 catcatcatctgaacttagttttaaaagacattctaatgcttgtacttgaggttgtattccaataagttcatcagctgtacctaagaatttatgacccaa 110  Q
    ||||||||||||| |||| ||| ||||||| ||||||| ||| |||  |||||||| |  ||||||| ||||||||    ||| ||||||||||||||||    
T  35054306 catcatcatctgagcttaatttcaaaagactttctaattcttctacccgaggttgtgtcgcaataaggtcatcagcaaaccctgagaatttatgacccaa 35054405  T
Q  111 cttttttatgacagcctggacaatactttcaat 143  Q
      ||||||| ||  |||| |||||| |||||||    
T  35054406 tgtttttatcacctcctgaacaatattttcaat 35054438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 240 - 347
Target Start/End: Complemental strand, 8063122 - 8063015
Alignment:
Q  240 ctttgcacacacaactaatcaaaacatttagaatcgtcacatcaattaatgtttttaatttacgtgggtcaaacgtagcaattcagaatgttttgattga 339  Q
    |||| |||||||||| ||||||||||||   ||| | ||| | |||||||| |||||||||| ||||  ||||||| |||||| | |||||||| ||||     
T  8063122 ctttacacacacaaccaatcaaaacattctaaattgccacgtaaattaatgattttaatttatgtggaccaaacgtggcaatttaaaatgttttaattgt 8063023  T
Q  340 ttgtgtgt 347  Q
    ||||||||    
T  8063022 ttgtgtgt 8063015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 256 - 302
Target Start/End: Complemental strand, 5760483 - 5760437
Alignment:
Q  256 aatcaaaacatttagaatcgtcacatcaattaatgtttttaatttac 302  Q
    ||||||||||||||||| ||||||| ||||||| |||||||||||||    
T  5760483 aatcaaaacatttagaaccgtcacaccaattaacgtttttaatttac 5760437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 235 - 289
Target Start/End: Original strand, 12516659 - 12516713
Alignment:
Q  235 aacaactttgcacacacaactaatcaaaacatttagaatcgtcacatcaattaat 289  Q
    |||||||||||| ||||||| ||||| |||||||| ||| |||||||||||||||    
T  12516659 aacaactttgcatacacaaccaatcagaacatttaaaattgtcacatcaattaat 12516713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 449 - 502
Target Start/End: Complemental strand, 44247162 - 44247109
Alignment:
Q  449 ggagtggaatgaaacggaatggaatagagatttcattcctttatttggatattt 502  Q
    |||| ||||||||||||||||||||||||||| |||||| |  |||||||||||    
T  44247162 ggagcggaatgaaacggaatggaatagagattacattccatcgtttggatattt 44247109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 241 - 331
Target Start/End: Original strand, 19427797 - 19427885
Alignment:
Q  241 tttgcacacacaactaatcaaaacatttagaatcgtcacatcaattaatgtttttaatttacgtgggtcaaacgtagcaattcagaatgtt 331  Q
    ||||||||||||||  |||||||||||  |||| | |||||||||||||| ||||| ||||  |||| ||||| | |||||||| ||||||    
T  19427797 tttgcacacacaaccgatcaaaacattctgaattgccacatcaattaatgattttatttta--tgggccaaacatggcaattcaaaatgtt 19427885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 664 - 707
Target Start/End: Original strand, 26674942 - 26674985
Alignment:
Q  664 tttagtcttccaactttccattttcacacttgtgttccaacaat 707  Q
    |||||||||||||||||| |||||||| ||||||||||| ||||    
T  26674942 tttagtcttccaactttcaattttcacgcttgtgttccaccaat 26674985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 261 - 306
Target Start/End: Original strand, 37141226 - 37141271
Alignment:
Q  261 aaacatttagaatcgtcacatcaattaatgtttttaatttacgtgg 306  Q
    |||||||||||||   ||||||||||||||||||||||||| ||||    
T  37141226 aaacatttagaatttccacatcaattaatgtttttaatttatgtgg 37141271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 6e-21; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 235 - 343
Target Start/End: Complemental strand, 44558108 - 44558000
Alignment:
Q  235 aacaactttgcacacacaactaatcaaaacatttagaatcgtcacatcaattaatgtttttaatttacgtgggtcaaacgtagcaattcagaatgttttg 334  Q
    |||||||||||||||||||| ||| ||||||||   ||||||||||||||||||| ||||||||| ||||||   |||| |  ||||||| |||||||||    
T  44558108 aacaactttgcacacacaaccaattaaaacattctaaatcgtcacatcaattaatatttttaattaacgtggactaaacatgacaattcataatgttttg 44558009  T
Q  335 attgattgt 343  Q
    |||||||||    
T  44558008 attgattgt 44558000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 241 - 347
Target Start/End: Original strand, 11330939 - 11331045
Alignment:
Q  241 tttgcacacacaactaatcaaaacatttagaatcgtcacatcaattaatgtttttaatttacgtgggtcaaacgtagcaattcagaatgttttgattgat 340  Q
    |||||| ||||||  |||||||| |||| |||| |||| ||||||||||| |||||||||| |||||| ||| || |||||| ||||||||||||||| |    
T  11330939 tttgcagacacaatcaatcaaaatattttgaattgtcatatcaattaatgattttaatttatgtgggttaaatgtggcaatttagaatgttttgattggt 11331038  T
Q  341 tgtgtgt 347  Q
    | |||||    
T  11331039 tatgtgt 11331045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 241 - 347
Target Start/End: Original strand, 11488960 - 11489066
Alignment:
Q  241 tttgcacacacaactaatcaaaacatttagaatcgtcacatcaattaatgtttttaatttacgtgggtcaaacgtagcaattcagaatgttttgattgat 340  Q
    |||||| ||||||  |||||||| |||| |||| |||| ||||||||||| |||||||||| |||||| ||| || |||||| ||||||||||||||| |    
T  11488960 tttgcagacacaatcaatcaaaatattttgaattgtcatatcaattaatgattttaatttatgtgggttaaatgtggcaatttagaatgttttgattggt 11489059  T
Q  341 tgtgtgt 347  Q
    | |||||    
T  11489060 tatgtgt 11489066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 238 - 302
Target Start/End: Original strand, 21822933 - 21822997
Alignment:
Q  238 aactttgcacacacaactaatcaaaacatttagaatcgtcacatcaattaatgtttttaatttac 302  Q
    ||||||||| |||||||  |||||||||||||||||| ||||||||| |||||||||||||||||    
T  21822933 aactttgcatacacaaccgatcaaaacatttagaatcatcacatcaaataatgtttttaatttac 21822997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 235 - 347
Target Start/End: Complemental strand, 24855227 - 24855115
Alignment:
Q  235 aacaactttgcacacacaactaatcaaaacatttagaatcgtcacatcaattaatgtttttaatttacgtgggtcaaacgtagcaattcagaatgttttg 334  Q
    ||||| |||||||| ||||| |||||||| |||   ||| |||||||||||||||| |||||| ||| ||||  ||| | | ||||||||||||||||||    
T  24855227 aacaattttgcacatacaaccaatcaaaatattctaaattgtcacatcaattaatgattttaacttatgtggaccaaccatggcaattcagaatgttttg 24855128  T
Q  335 attgattgtgtgt 347  Q
    |||| ||||||||    
T  24855127 attggttgtgtgt 24855115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 241 - 348
Target Start/End: Original strand, 5207598 - 5207705
Alignment:
Q  241 tttgcacacacaactaatcaaaacatttagaatcgtcacatcaattaatgtttttaatttacgtgggtcaaacgtagcaattcagaatgttttgattgat 340  Q
    ||||| || ||||| ||||||||||||  |||| | |||||||||||||| |||||||||| ||| | |||| ||  ||||||||||||||||||||| |    
T  5207598 tttgcgcatacaaccaatcaaaacattctgaattgccacatcaattaatgattttaatttatgtgagccaaatgtgacaattcagaatgttttgattggt 5207697  T
Q  341 tgtgtgta 348  Q
    ||| ||||    
T  5207698 tgtatgta 5207705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 259 - 343
Target Start/End: Complemental strand, 22771429 - 22771344
Alignment:
Q  259 caaaacatttagaatcgtcacatcaattaatgttttt-aatttacgtgggtcaaacgtagcaattcagaatgttttgattgattgt 343  Q
    |||||||||  |||| | ||||||||||||| ||||| |||| ||||||||||||| | |||||||||||||||||||||| ||||    
T  22771429 caaaacattctgaattgccacatcaattaatattttttaattaacgtgggtcaaacatggcaattcagaatgttttgattggttgt 22771344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 259 - 343
Target Start/End: Complemental strand, 23077223 - 23077138
Alignment:
Q  259 caaaacatttagaatcgtcacatcaattaatgttttt-aatttacgtgggtcaaacgtagcaattcagaatgttttgattgattgt 343  Q
    |||||||||  |||| | ||||||||||||| ||||| |||| ||||||||||||| | |||||||||||||||||||||| ||||    
T  23077223 caaaacattctgaattgccacatcaattaatattttttaattaacgtgggtcaaacatggcaattcagaatgttttgattggttgt 23077138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 257 - 306
Target Start/End: Complemental strand, 21781282 - 21781233
Alignment:
Q  257 atcaaaacatttagaatcgtcacatcaattaatgtttttaatttacgtgg 306  Q
    |||||||||||||||||||| ||||||| |||| ||||||||||||||||    
T  21781282 atcaaaacatttagaatcgtaacatcaaataatatttttaatttacgtgg 21781233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 241 - 320
Target Start/End: Original strand, 41910035 - 41910114
Alignment:
Q  241 tttgcacacacaactaatcaaaacatttagaatcgtcacatcaattaatgtttttaatttacgtgggtcaaacgtagcaa 320  Q
    |||| ||||||||  ||||||||||||| |||| ||||||||| |||||| |||||||||| ||||  ||||||| ||||    
T  41910035 tttggacacacaatcaatcaaaacattttgaattgtcacatcagttaatgattttaatttatgtggcccaaacgtggcaa 41910114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 241 - 304
Target Start/End: Original strand, 42048468 - 42048531
Alignment:
Q  241 tttgcacacacaactaatcaaaacatttagaatcgtcacatcaattaatgtttttaatttacgt 304  Q
    |||||||| ||||  |||||| ||||||||||| ||||||||||||||| |||| |||||||||    
T  42048468 tttgcacatacaatcaatcaagacatttagaatagtcacatcaattaatattttaaatttacgt 42048531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 230 - 288
Target Start/End: Complemental strand, 36523775 - 36523717
Alignment:
Q  230 tttagaacaactttgcacacacaactaatcaaaacatttagaatcgtcacatcaattaa 288  Q
    |||| |||||||||||| ||||||| ||||| || ||||||||| ||||||||||||||    
T  36523775 tttaaaacaactttgcatacacaacgaatcagaatatttagaattgtcacatcaattaa 36523717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 241 - 306
Target Start/End: Original strand, 16910041 - 16910106
Alignment:
Q  241 tttgcacacacaactaatcaaaacatttagaatcgtcacatcaattaatgtttttaatttacgtgg 306  Q
    ||||||| |||||  |||||||| ||||| ||||||||||| ||||||| ||||||||||| ||||    
T  16910041 tttgcacgcacaatcaatcaaaatatttataatcgtcacataaattaatatttttaatttatgtgg 16910106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 414 - 473
Target Start/End: Original strand, 24019993 - 24020053
Alignment:
Q  414 ttaggctccgtttgaattgatgaaaca-aacagagtggagtggaatgaaacggaatggaat 473  Q
    |||||||||||||| ||||||| |||  ||||||| |||| ||||||||||||||||||||    
T  24019993 ttaggctccgtttggattgatggaacgtaacagagcggagcggaatgaaacggaatggaat 24020053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 241 - 301
Target Start/End: Original strand, 40491139 - 40491199
Alignment:
Q  241 tttgcacacacaactaatcaaaacatttagaatcgtcacatcaattaatgtttttaattta 301  Q
    |||||||||||||| |||||||| ||||| |||  ||| ||||| ||||||||||||||||    
T  40491139 tttgcacacacaaccaatcaaaatatttaaaattatcatatcaaataatgtttttaattta 40491199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 235 - 305
Target Start/End: Original strand, 50302579 - 50302649
Alignment:
Q  235 aacaactttgcacacacaactaatcaaaacatttagaatcgtcacatcaattaatgtttttaatttacgtg 305  Q
    ||||| |||||||| ||||  ||| |||| ||||| |||||  | ||||||||||||||||||||||||||    
T  50302579 aacaattttgcacatacaatcaataaaaatatttataatcgcaaaatcaattaatgtttttaatttacgtg 50302649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 256 - 305
Target Start/End: Complemental strand, 10423095 - 10423046
Alignment:
Q  256 aatcaaaacatttagaatcgtcacatcaattaatgtttttaatttacgtg 305  Q
    |||||||||||||||||| | ||| |||||||||  ||||||||||||||    
T  10423095 aatcaaaacatttagaattgccacgtcaattaataattttaatttacgtg 10423046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 6e-18; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 241 - 324
Target Start/End: Original strand, 12891469 - 12891552
Alignment:
Q  241 tttgcacacacaactaatcaaaacatttagaatcgtcacatcaattaatgtttttaatttacgtgggtcaaacgtagcaattca 324  Q
    ||||||| |||||||||||||||||||| |||||  ||||| |||||||||||||| |||||||||| ||||| | ||||||||    
T  12891469 tttgcacgcacaactaatcaaaacattttgaatcaccacattaattaatgtttttagtttacgtgggacaaacattgcaattca 12891552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 257 - 306
Target Start/End: Complemental strand, 20895457 - 20895408
Alignment:
Q  257 atcaaaacatttagaatcgtcacatcaattaatgtttttaatttacgtgg 306  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  20895457 atcaaaacatttagaatcgtcacatcaaataatgtttttaatttacgtgg 20895408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 238 - 306
Target Start/End: Original strand, 20906270 - 20906338
Alignment:
Q  238 aactttgcacacacaactaatcaaaacatttagaatcgtcacatcaattaatgtttttaatttacgtgg 306  Q
    ||||||||| |||||||  ||||||||||||||||||||||| |||| |||| ||||||||||||||||    
T  20906270 aactttgcatacacaaccgatcaaaacatttagaatcgtcacttcaaataatatttttaatttacgtgg 20906338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 241 - 300
Target Start/End: Complemental strand, 17541007 - 17540948
Alignment:
Q  241 tttgcacacacaactaatcaaaacatttagaatcgtcacatcaattaatgtttttaattt 300  Q
    ||||||||||||||||||||||||| |||||||||  ||||||||| |||||||||||||    
T  17541007 tttgcacacacaactaatcaaaacacttagaatcgcaacatcaattcatgtttttaattt 17540948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 235 - 306
Target Start/End: Original strand, 34873504 - 34873575
Alignment:
Q  235 aacaactttgcacacacaactaatcaaaacatttagaatcgtcacatcaattaatgtttttaatttacgtgg 306  Q
    ||||| |||||| ||||||  ||| |||||||||| |||||||||||||||||||||||| |||||||||||    
T  34873504 aacaaatttgcatacacaatcaataaaaacatttaaaatcgtcacatcaattaatgttttaaatttacgtgg 34873575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 235 - 298
Target Start/End: Original strand, 36879993 - 36880056
Alignment:
Q  235 aacaactttgcacacacaactaatcaaaacatttagaatcgtcacatcaattaatgtttttaat 298  Q
    ||||| ||| |||||||||||||||||||||||||||||| ||| |||||||||||| ||||||    
T  36879993 aacaattttacacacacaactaatcaaaacatttagaatcttcatatcaattaatgtatttaat 36880056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 241 - 347
Target Start/End: Original strand, 24229411 - 24229517
Alignment:
Q  241 tttgcacacacaactaatcaaaacatttagaatcgtcacatcaattaatgtttttaatttacgtgggtcaaacgtagcaattcagaatgttttgattgat 340  Q
    |||||||||||||| |||||||| |||  |||| ||||  |||||||||| |||||||||| |||||  |||| | | |||||| ||||||||||||| |    
T  24229411 tttgcacacacaaccaatcaaaatattctgaattgtcatttcaattaatgattttaatttatgtgggctaaacatggtaattcaaaatgttttgattggt 24229510  T
Q  341 tgtgtgt 347  Q
    |||||||    
T  24229511 tgtgtgt 24229517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 257 - 306
Target Start/End: Original strand, 20919570 - 20919619
Alignment:
Q  257 atcaaaacatttagaatcgtcacatcaattaatgtttttaatttacgtgg 306  Q
    ||||||| |||||||||||||||||||| |||||||||||||||||||||    
T  20919570 atcaaaatatttagaatcgtcacatcaaataatgtttttaatttacgtgg 20919619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 235 - 299
Target Start/End: Complemental strand, 29048686 - 29048622
Alignment:
Q  235 aacaactttgcacacacaactaatcaaaacatttagaatcgtcacatcaattaatgtttttaatt 299  Q
    ||||| |||||||||||||| |||||||| ||||| |||| ||||||||||||||||||| ||||    
T  29048686 aacaattttgcacacacaaccaatcaaaatatttataatcatcacatcaattaatgttttcaatt 29048622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 234 - 305
Target Start/End: Original strand, 37866908 - 37866979
Alignment:
Q  234 gaacaactttgcacacacaactaatcaaaacatttagaatcgtcacatcaattaatgtttttaatttacgtg 305  Q
    |||||| ||| |||| | || ||||||||| ||||||||| ||||||| |||||||||||||||||||||||    
T  37866908 gaacaattttacacatataattaatcaaaatatttagaattgtcacatgaattaatgtttttaatttacgtg 37866979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 229 - 302
Target Start/End: Complemental strand, 32746423 - 32746350
Alignment:
Q  229 gtttagaacaactttgcacacacaactaatcaaaacatttagaatcgtcacatcaattaatgtttttaatttac 302  Q
    ||||| ||||| |||| ||||||||| |||||||||||||| |||   ||||||||||||| ||||||||||||    
T  32746423 gtttaaaacaattttgtacacacaaccaatcaaaacatttataatttccacatcaattaatatttttaatttac 32746350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 235 - 343
Target Start/End: Complemental strand, 9035456 - 9035348
Alignment:
Q  235 aacaactttgcacacacaactaatcaaaacatttagaatcgtcacatcaattaatgtttttaatttacgtgggtcaaacgtagcaattcagaatgttttg 334  Q
    ||||| |||||||||| ||| ||||||||  ||  |||| | |||||||||||||| |||||||||| ||| | ||||| |  | ||| |||||||||||    
T  9035456 aacaattttgcacacataaccaatcaaaattttatgaattgccacatcaattaatgattttaatttatgtgtgccaaacatgactattgagaatgttttg 9035357  T
Q  335 attgattgt 343  Q
    |||||||||    
T  9035356 attgattgt 9035348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 235 - 273
Target Start/End: Complemental strand, 42519524 - 42519486
Alignment:
Q  235 aacaactttgcacacacaactaatcaaaacatttagaat 273  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  42519524 aacaactttgcacacacaacaaatcaaaacatttagaat 42519486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 235 - 306
Target Start/End: Complemental strand, 4799720 - 4799649
Alignment:
Q  235 aacaactttgcacacacaactaatcaaaacatttagaatcgtcacatcaattaatgtttttaatttacgtgg 306  Q
    ||||| |||||||| |||||||||||||||||||| ||| || | || | ||||| ||||||||||| ||||    
T  4799720 aacaattttgcacatacaactaatcaaaacatttaaaatggttatattagttaatatttttaatttatgtgg 4799649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 259 - 301
Target Start/End: Original strand, 9474857 - 9474899
Alignment:
Q  259 caaaacatttagaatcgtcacatcaattaatgtttttaattta 301  Q
    ||||||||||| |||||||||||| |||||| |||||||||||    
T  9474857 caaaacatttaaaatcgtcacatcgattaatatttttaattta 9474899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 260 - 302
Target Start/End: Original strand, 29814068 - 29814110
Alignment:
Q  260 aaaacatttagaatcgtcacatcaattaatgtttttaatttac 302  Q
    |||| |||||||||||||||||| |||||| ||||||||||||    
T  29814068 aaaatatttagaatcgtcacatcgattaatatttttaatttac 29814110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 235 - 301
Target Start/End: Original strand, 35503541 - 35503607
Alignment:
Q  235 aacaactttgcacacacaactaatcaaaacatttagaatcgtcacatcaattaatgtttttaattta 301  Q
    ||||| |||||||||| ||  |||||||||||||| ||||   |||||||||||| |||||||||||    
T  35503541 aacaattttgcacacagaatcaatcaaaacatttaaaatcaatacatcaattaatatttttaattta 35503607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0265 (Bit Score: 45; Significance: 4e-16; HSPs: 1)
Name: scaffold0265
Description:

Target: scaffold0265; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 238 - 302
Target Start/End: Complemental strand, 9876 - 9812
Alignment:
Q  238 aactttgcacacacaactaatcaaaacatttagaatcgtcacatcaattaatgtttttaatttac 302  Q
    ||||||||| |||||||  |||||||||||||||||| ||||||||| |||||||||||||||||    
T  9876 aactttgcatacacaaccgatcaaaacatttagaatcatcacatcaaataatgtttttaatttac 9812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 260 - 306
Target Start/End: Original strand, 63620 - 63666
Alignment:
Q  260 aaaacatttagaatcgtcacatcaattaatgtttttaatttacgtgg 306  Q
    |||||||||||||| |||||||||| |||||||||||||||| ||||    
T  63620 aaaacatttagaattgtcacatcaaataatgtttttaatttatgtgg 63666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 260 - 306
Target Start/End: Complemental strand, 135012 - 134966
Alignment:
Q  260 aaaacatttagaatcgtcacatcaattaatgtttttaatttacgtgg 306  Q
    |||||||||||||| |||||||||| |||||||||||||||| ||||    
T  135012 aaaacatttagaattgtcacatcaaataatgtttttaatttatgtgg 134966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 256 - 298
Target Start/End: Original strand, 427594 - 427636
Alignment:
Q  256 aatcaaaacatttagaatcgtcacatcaattaatgtttttaat 298  Q
    |||||||||||||| ||| ||||||||||||||||||||||||    
T  427594 aatcaaaacatttaaaattgtcacatcaattaatgtttttaat 427636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 235 - 281
Target Start/End: Complemental strand, 427685 - 427639
Alignment:
Q  235 aacaactttgcacacacaactaatcaaaacatttagaatcgtcacat 281  Q
    ||||||||||||||||||||||||||||| ||| ||||| |||||||    
T  427685 aacaactttgcacacacaactaatcaaaatattcagaattgtcacat 427639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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