View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17152_high_11 (Length: 550)
Name: NF17152_high_11
Description: NF17152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17152_high_11 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 388; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 61 - 532
Target Start/End: Complemental strand, 10386234 - 10385761
Alignment:
| Q |
61 |
tatttgaaactatgtttgattttaagtaaacttagnnnnnnn-aactatgttt-gattaaatgcactgaacgaaattgcgccaagtgttttttgtggtta |
158 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
10386234 |
tatttgaaactatgtttgattttaagtaaacttagttttttttaactatgttttgattaaatgcactgaacgaaattgcgccaagtgttttttttggtta |
10386135 |
T |
|
| Q |
159 |
aattgtgttgttatctgtttctaaagtagataagggaagacgacaatnnnnnnnttcaaagttttcaaaacacatactattatttcctattgtcagtgta |
258 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
10386134 |
aattgtgttgttatttgtttctaaagtagataagggaagacgacagtaaaaaaattcaaagttttcaaaacacatactattatttcctattgtcaatgta |
10386035 |
T |
|
| Q |
259 |
ctctctcttttacagtaagcttaaataagttgtgatttggtggaattacctactctgcttgcatattttactctttctgactctatacttgaataaaatt |
358 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10386034 |
ctctctcttttacagtaagcttaaataagttgtgatttggtggaattacctactctgcttgcatattttactctttctgactctatacttgaataaaatt |
10385935 |
T |
|
| Q |
359 |
gaaagtacaaatgtttagatagattaccagttcttccccagtaaagatgaaaaacctttacttacccctatttttggatgacatattatggtgattcatt |
458 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
10385934 |
gaaagtacaaatgtttagatagattaccagttcttccccagtaaagatgaaaaacctttacttacccctgtttttggatgacatattatggtgattcatt |
10385835 |
T |
|
| Q |
459 |
gtagtaaacgcgtttatgaaatgtgacactggaactaacatgctggcaatatatctgatcttatgcccagaagg |
532 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10385834 |
gtagtaaatgcgttgatgaaatgtgacactggaactaacatgctggcaatatatctgatcttatgcccagaagg |
10385761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 10386381 - 10386238
Alignment:
| Q |
1 |
ctcaaccccaaacttcacagtcaatatgaaacgccatttgattaaaaatttctacaaccatatttgaaactatgtttgattttaagtaaacttag--nnn |
98 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10386381 |
ctcaaccccaaacttcac-gtcaatatgaa--------tgattaaaaatttctacaaccatatttgaaactatgtttgattttaagtaaacttagttttt |
10386291 |
T |
|
| Q |
99 |
nnnnaactatgtttgattaaatgcactgaacgaaattgcgccaagtgtttttt |
151 |
Q |
| |
|
|| ||||||||||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
10386290 |
ttttaattatgtttgattaaatgcactgaatgaaattgcgccaagggtttttt |
10386238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University