View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17152_high_12 (Length: 544)
Name: NF17152_high_12
Description: NF17152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17152_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 19 - 536
Target Start/End: Original strand, 41654809 - 41655338
Alignment:
| Q |
19 |
ctttgcttatctttctgaagttatttactgctatttcattttataatgtgttttgcagaatatgcagaggtgtagtcaacccataccttgcggtacattc |
118 |
Q |
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| T |
41654809 |
ctttgcttatctttctgaagttatttactgctatttcattttataatgtgttttgcagaatatgcagaggtgtagtcaacccataccttgcggtacattc |
41654908 |
T |
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| Q |
119 |
aataatgacggttccatatatgcttacgcggtatgcttcatattgctgttttaaaa--------------------attgtatgtagttttttgttatat |
198 |
Q |
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| T |
41654909 |
aataatgacggttccatatatgcttacgcggtatgcttcatattgctgttttaaaatccgtagttatttactttgtattgtatgtagttttttgttatat |
41655008 |
T |
|
| Q |
199 |
ttttgtttcttcatttactataatcaaataaccaagtaaagagaaatcatttgtattgctgggttcacagtttctagctttatagtctgatcattgaagt |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |||| |
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| T |
41655009 |
ttttgtttcttcatttactataatcaaataaccaagtaaagagaaatcatatgtattgctgggttcacagtttctagctttatagtcggatcatccaagt |
41655108 |
T |
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| Q |
299 |
aatttcaaacccttcatacttatcgatgggcctcatttcgtagaaacatcatgtttagacagttaattata----atttgtcgcttggattagatatttg |
394 |
Q |
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|||||||||||||||||| |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
41655109 |
aatttcaaacccttcata----------------atttcgcagaaacatcatgtttagacagttaattatatataatttgtcgcttggattagatatttg |
41655192 |
T |
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| Q |
395 |
agccttgagggttaaactgtcaattttatgcatatcaaatagatgttttaaaaacaataaaaataatttgcttgctattt----tatggacctgttgata |
490 |
Q |
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| T |
41655193 |
agccttgagggttaaactgtcaattttatgcatatcaaatagatgttttaaaaacaataaaaataatttgcttgctattttatatatggacctgttgata |
41655292 |
T |
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| Q |
491 |
tgtgccttcaattaagttaccataatttgactatgaaacaaatttt |
536 |
Q |
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| T |
41655293 |
tgtgccttcaattaagttaccataatttgactctgaaacaactttt |
41655338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 63 - 160
Target Start/End: Complemental strand, 28815355 - 28815258
Alignment:
| Q |
63 |
aatgtgttttgcagaatatgcagaggtgtagtcaacccataccttgcggtacattcaataatgacggttccatatatgcttacgcggtatgcttcata |
160 |
Q |
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||||||||||| || ||||| ||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||| |||| |
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| T |
28815355 |
aatgtgttttgtaggcaatgcaaaggtgtagtcagcccataccttgtggtacattcaataatgatggttccatatatgcttatgcggtatgctccata |
28815258 |
T |
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