View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17152_high_28 (Length: 436)
Name: NF17152_high_28
Description: NF17152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17152_high_28 |
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Alignment Details
Target: chr7 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 5 - 418
Target Start/End: Original strand, 48494231 - 48494644
Alignment:
| Q |
5 |
tagataatactgcttgatttttgcatgaccatgtttattaatccatcccaccattgcacttgaaccaaccatctttccatctctagaaaatccaatcccc |
104 |
Q |
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| T |
48494231 |
tagataatactgcttgatttttgcatgaccatgtttattaatccatcccaccattgcacttgaaccaaccatctttccatctctagaaaatccaatcccc |
48494330 |
T |
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| Q |
105 |
acccacccaactgtgtagggtgcagataatatgattgttgtggtatcaccattttttgtgtactgcaat-aaaacctcacgacattattagatgcaaagg |
203 |
Q |
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| T |
48494331 |
acccacccaactgtgtagggtgcagataatatgattgttgtggtatcaccattttttgtgtactgcaataaaaacctcacgacattattagatgcaaagg |
48494430 |
T |
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| Q |
204 |
aacacctcatgacattcaaataataataaatctttaatttctggaaagatttttgaataggagcagttatctaagatatagaa-ccatagaacatcaaaa |
302 |
Q |
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| T |
48494431 |
aacacctcatgacattcaaataataataaatctttaatttctgtaaagattttagaataggagcagttgtctaagatatagaacccatagaacatcaaaa |
48494530 |
T |
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| Q |
303 |
ttctaaaatcatgtaaaaataataatctaacatcaaaatgattttgtctaccaacattattttgatcttattggaattggactcggatcctagagcaagg |
402 |
Q |
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| T |
48494531 |
ttctaaaatcatgtaaaaataataatctaacat--aaatgattttgtctaccaacattattttgatcttattggaattggactcggatcctagagcaagg |
48494628 |
T |
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| Q |
403 |
cttcgggtctccaaac |
418 |
Q |
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| T |
48494629 |
cttcgggtctccaaac |
48494644 |
T |
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