View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17152_high_33 (Length: 418)

Name: NF17152_high_33
Description: NF17152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17152_high_33
NF17152_high_33
[»] chr7 (2 HSPs)
chr7 (18-399)||(6687977-6688352)
chr7 (33-81)||(19003610-19003658)
[»] chr4 (2 HSPs)
chr4 (18-87)||(51904814-51904885)
chr4 (331-386)||(3786187-3786242)
[»] chr5 (1 HSPs)
chr5 (18-82)||(519993-520057)
[»] chr8 (2 HSPs)
chr8 (37-120)||(13242306-13242388)
chr8 (23-186)||(30909277-30909441)
[»] chr6 (2 HSPs)
chr6 (333-386)||(5739882-5739935)
chr6 (41-82)||(14563671-14563712)
[»] chr3 (1 HSPs)
chr3 (330-375)||(50432543-50432588)
[»] chr1 (1 HSPs)
chr1 (37-93)||(14198449-14198505)
[»] scaffold0002 (1 HSPs)
scaffold0002 (333-386)||(490208-490261)
[»] chr2 (1 HSPs)
chr2 (333-386)||(42261373-42261426)


Alignment Details
Target: chr7 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 18 - 399
Target Start/End: Complemental strand, 6688352 - 6687977
Alignment:
Q  18 gattataagatggtaaatgagagaaatttaggggatgttcttggagaatattgagagctaaatttattggttacttgtgtaaccctcttgattaagggaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  6688352 gattataagatggtaaatgagagaaatttaggggatgttcttggagaatattgagagctaaatttattggttacttgtgtaactctcttgattaagggaa 6688253  T
Q  118 gagggtggataaaaaggtagaaatttggtttgcttttggtgagcttgttaaatgtagtttcttgtaactttgtaatgactatttgattctacattaacag 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||  |    
T  6688252 gagggtggataaaaaggtagaaatttggtttgcttttggtgagcttgttaaatgtagtttcttgtaactttgtaatgactatttgattctagattaaagg 6688153  T
Q  218 gatgttctcttcatcggatataggtcattgttcgaccgaactgagaaagaaatattagtgtggtgttcctctactcttttttctttatcttgttttgnnn 317  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||        
T  6688152 gatgttctcttcaccggatataggtcattgttcgaccgaactgagaaacaaacattagtgtggtgttcctctactcttttttctttatcttgtttt---- 6688057  T
Q  318 nnnnnnnngttatgattgtgattttgctttccacttggttgttagattggatctagatatgttgttgtttgatataatttag 399  Q
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6688056 --ttttttgttatgtttgtgattttgctttccacttggttgttagattggatctagatatgttgttgtttgatataatttag 6687977  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 81
Target Start/End: Complemental strand, 19003658 - 19003610
Alignment:
Q  33 aatgagagaaatttaggggatgttcttggagaatattgagagctaaatt 81  Q
    ||||||||||||||| ||||||||| |||| ||||||| ||||| ||||    
T  19003658 aatgagagaaatttatgggatgttcatggaaaatattgggagctgaatt 19003610  T

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Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 51904885 - 51904814
Alignment:
Q  18 gattataagatggtaaatgagagaaattt--aggggatgttcttggagaatattgagagctaaatttattgg 87  Q
    |||||||||| ||||||||||||||||||  |||||||||||||| ||| ||||| ||||||||||||||||    
T  51904885 gattataagagggtaaatgagagaaatttttaggggatgttcttgaagagtattgggagctaaatttattgg 51904814  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 331 - 386
Target Start/End: Original strand, 3786187 - 3786242
Alignment:
Q  331 gattgtgattttgctttccacttggttgttagattggatctagatatgttgttgtt 386  Q
    |||||| |||||| ||| |||||||||| || ||| ||||||||||||||||||||    
T  3786187 gattgtaattttgttttacacttggttgctatattagatctagatatgttgttgtt 3786242  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 519993 - 520057
Alignment:
Q  18 gattataagatggtaaatgagagaaatttaggggatgttcttggagaatattgagagctaaattt 82  Q
    |||| ||||| |||||||||||||||||||| |||||||||||| ||| ||| ||||||||||||    
T  519993 gattgtaagagggtaaatgagagaaatttagaggatgttcttggtgaacattaagagctaaattt 520057  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 37 - 120
Target Start/End: Complemental strand, 13242388 - 13242306
Alignment:
Q  37 agagaaatttaggggatgttcttggagaatattgagagctaaatttattggttacttgtgtaaccctcttgattaagggaagag 120  Q
    |||||||||||||| |||||| ||||||  ||| ||||||||||||||||||||||| |||||| ||||| || |||| |||||    
T  13242388 agagaaatttagggaatgttcgtggagaccatttagagctaaatttattggttactt-tgtaactctctttatcaaggaaagag 13242306  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 186
Target Start/End: Original strand, 30909277 - 30909441
Alignment:
Q  23 taagatggtaaatgagagaaatttaggggatgttcttggagaatattgagagctaaatttattggttacttgtgtaaccctcttgattaagggaagaggg 122  Q
    ||||| ||||||||| ||||| || || ||| |||| |||||| ||||  | |||||||| |||||   || || ||| || ||||| |||| ||||| |    
T  30909277 taagagggtaaatgaaagaaacttcggtgatattctgggagaaaattggaacctaaatttgttggtcctttttgcaactcttttgatcaaggaaagagag 30909376  T
Q  123 tggataa-aaaggtagaaatttggtttgcttttggtgagcttgttaaatgtagtttcttgtaact 186  Q
    |||| || ||| ||||||||| ||||| || |||| ||||||||| ||  || ||||||||||||    
T  30909377 tggaaaataaatgtagaaattaggtttactcttggagagcttgtttaaactaatttcttgtaact 30909441  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 333 - 386
Target Start/End: Complemental strand, 5739935 - 5739882
Alignment:
Q  333 ttgtgattttgctttccacttggttgttagattggatctagatatgttgttgtt 386  Q
    ||||| ||||||||| |||||||||| |||||| ||| ||||||||||||||||    
T  5739935 ttgtggttttgctttacacttggttgctagattagatttagatatgttgttgtt 5739882  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 82
Target Start/End: Original strand, 14563671 - 14563712
Alignment:
Q  41 aaatttaggggatgttcttggagaatattgagagctaaattt 82  Q
    |||||||| |||| ||||||||||| ||||||||||||||||    
T  14563671 aaatttagtggatattcttggagaacattgagagctaaattt 14563712  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 330 - 375
Target Start/End: Complemental strand, 50432588 - 50432543
Alignment:
Q  330 tgattgtgattttgctttccacttggttgttagattggatctagat 375  Q
    |||||||| ||||||||||||||| |||| ||||||||||||||||    
T  50432588 tgattgtggttttgctttccacttcgttgctagattggatctagat 50432543  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 93
Target Start/End: Original strand, 14198449 - 14198505
Alignment:
Q  37 agagaaatttaggggatgttcttggagaatattgagagctaaatttattggttactt 93  Q
    ||||||||||| ||||| ||||||| | | |||||||||||||||| ||||||||||    
T  14198449 agagaaatttaagggattttcttggtgtacattgagagctaaatttcttggttactt 14198505  T

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Target: scaffold0002 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 386
Target Start/End: Complemental strand, 490261 - 490208
Alignment:
Q  333 ttgtgattttgctttccacttggttgttagattggatctagatatgttgttgtt 386  Q
    ||||| ||||||| | |||||||||| |||||| ||||||||||| ||||||||    
T  490261 ttgtggttttgctatacacttggttgctagattagatctagatatattgttgtt 490208  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 386
Target Start/End: Complemental strand, 42261426 - 42261373
Alignment:
Q  333 ttgtgattttgctttccacttggttgttagattggatctagatatgttgttgtt 386  Q
    ||||| ||||||| | |||||||||| |||||| ||||||||||| ||||||||    
T  42261426 ttgtggttttgctatacacttggttgctagattagatctagatatattgttgtt 42261373  T

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