View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17152_high_34 (Length: 416)
Name: NF17152_high_34
Description: NF17152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17152_high_34 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 7 - 257
Target Start/End: Original strand, 35032242 - 35032494
Alignment:
| Q |
7 |
caccaccaacaacaacaataatgaaaatcaagtatcgaacactgaagttggttgctctgctaaacaaaagaagagaagagatttgatcgatttaaatgaa |
106 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| ||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35032242 |
caccaacaacaacaacaataatgaaaatcaagtattgaacattgaagttgattgttctgctaaacaaaagaagagaagagatttgatcgatttaaatgaa |
35032341 |
T |
|
| Q |
107 |
tcttctccttcttctgattattccgaggtatttatatactctctttactctgatacatgtaaagatgatgatcaagatcatgtatttacaaaatatata- |
205 |
Q |
| |
|
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35032342 |
tctcctccttctcctgattattccgaggtatttatatactctctttactctgatacatgtaaagatgatgatcaagatcatgtatttacaaaatatatat |
35032441 |
T |
|
| Q |
206 |
-gagacaatgatataatgattaacttttaaaacaatataaaaaatttcataca |
257 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35032442 |
tgagacaatgatataatgattaacttttaaaacaatataaaaaatttcataca |
35032494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University