View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17152_high_55 (Length: 324)
Name: NF17152_high_55
Description: NF17152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17152_high_55 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 12 - 307
Target Start/End: Complemental strand, 38768433 - 38768137
Alignment:
| Q |
12 |
agtagcaaaggagttaaaggtcaagggtttgaatcctcgtacaggagaaaatactaacatgctaatatttgtcattnnnnnnnnnnn-tcacattagaac |
110 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
38768433 |
agtagcaaaagagttaaaggtcaagggtttgaatcctcgtacgggagaaaatactaacatgctaatatttgtcattaaaaaaaataaatcacattagaac |
38768334 |
T |
|
| Q |
111 |
gtggcaagatttgctaaaataatagaaatattttgaggtagaagaagagaattcaacctgtgtgaaaccatccatctattatggcttcttttgttaactc |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38768333 |
gtggcaagatttgctaaaataatagaaatattttgaggtagaagaagagaattcaacctgtgtgaaaccatccatctattatggcttcttttgttaactc |
38768234 |
T |
|
| Q |
211 |
aggatttttatggtaaccagtgaaaacacttttgcctctgacacatatctccccacatggaggagttccaagaggattgtaacccatgtctggaact |
307 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
38768233 |
aggattcttatggtaaccagtgaaaacacttttgcctctgacacatatctctccacatggcggagttccaagaggattgtaacccatgtctggaact |
38768137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 160 - 307
Target Start/End: Original strand, 44995964 - 44996111
Alignment:
| Q |
160 |
aattcaacctgtgtgaaaccatccatctattatggcttcttttgttaactcaggatttttatggtaaccagtgaaaacacttttgcctctgacacatatc |
259 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| ||| |||||||||||||| ||||| ||||| |||| |||||| ||| ||||| | ||||||| |
|
|
| T |
44995964 |
aattcaacctgtgtgaaaccatccatctactatggattcctttgttaactcagggtttttgtggtagccagagaaaactgatttccctctaagacatatc |
44996063 |
T |
|
| Q |
260 |
tccccacatggaggagttccaagaggattgtaacccatgtctggaact |
307 |
Q |
| |
|
|| ||||||| |||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
44996064 |
tcaccacatgaaggatttccaagaggattgtaacccatctctggaact |
44996111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 71
Target Start/End: Complemental strand, 47774140 - 47774091
Alignment:
| Q |
22 |
gagttaaaggtcaagggtttgaatcctcgtacaggagaaaatactaacat |
71 |
Q |
| |
|
|||||||||||| |||||||||||||| | | ||||||||||||||||| |
|
|
| T |
47774140 |
gagttaaaggtccagggtttgaatcctggcaagggagaaaatactaacat |
47774091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University