View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17152_high_58 (Length: 306)
Name: NF17152_high_58
Description: NF17152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17152_high_58 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 25 - 296
Target Start/End: Original strand, 1836987 - 1837267
Alignment:
| Q |
25 |
ctgcatacgacgtagctgccttgcatttcaggggacgtgaagccaggctcaatttcccggaacttgcaaacactcttcctcgtcctctaagcaacaatgc |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1836987 |
ctgcatacgacgtagctgccttgcatttcaggggacgtgaagccaggctcaatttcccggaacttgcaaacactcttcctcgtcctctaagcaacaatgc |
1837086 |
T |
|
| Q |
125 |
tgaccacattcgaatggcagcacatgaagccgccttgaggttgagag------ccaacatgttggcgccaccagataacaacagtggaacag---gctca |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
1837087 |
tgaccacattcgaatggcagcacatgaagccgccttgaggttgagagccaacaccaacatgttggcgccactagataacaacagtggaacaggctgctca |
1837186 |
T |
|
| Q |
216 |
gccagttccactgatgcggtggcgcctctgagggtcagactctctccaagtcaaattcaagcgattaatgattcgcctatg |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
1837187 |
gccagttccactgatgcggtggcgcctctgagggtcagactctctccaagtcaaattcaagcgattaacgattcgcctatg |
1837267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University