View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17152_high_60 (Length: 300)
Name: NF17152_high_60
Description: NF17152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17152_high_60 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 18 - 282
Target Start/End: Complemental strand, 10295110 - 10294849
Alignment:
| Q |
18 |
gaatgaaaatgctgtcacagataaatatgcaggatacttttttagtaccggcgcctgaaaataattagttattggaaaaaagttaaactttccattgata |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10295110 |
gaatgaaaatgctgtcacagataaatatgcaggatacttttttagtaccggcgcctgaaaataattagttattggaaaaaagttaaactttccattgata |
10295011 |
T |
|
| Q |
118 |
tcaacagtcacttaatgaattnnnnnnnnnnntcatttaatgtatatnnnnnnnnngatcaatacctgaatggctaggaaagcagccaagcacgtgcagt |
217 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10295010 |
tcaacagtcacttaatgaatt---aaaaaaaatcatttaatgtatataaaaaaaaagatcaatacctgaatggctaggaaagcagccaagcacgtgcagt |
10294914 |
T |
|
| Q |
218 |
tacctatcaagaacataactccaaattcaaaattttctgatccaagattcagtaaaccagtaatc |
282 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
10294913 |
tacctatcaagaacataactccaagttcgaaattttctgatccaagattcagtaaaccagtaatc |
10294849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 18 - 134
Target Start/End: Complemental strand, 10302844 - 10302728
Alignment:
| Q |
18 |
gaatgaaaatgctgtcacagataaatatgcaggatacttttttagtaccggcgcctgaaaataattagttattggaaaaaagttaaactttccattgata |
117 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
10302844 |
gaatgaaaatgctgtcactgatagatatgcaggatacttttttagtacctgcgcctgaaaacaattagttattggaaataagttaaacttgccattgata |
10302745 |
T |
|
| Q |
118 |
tcaacagtcacttaatg |
134 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
10302744 |
tcaacagtcacttaatg |
10302728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 179 - 282
Target Start/End: Complemental strand, 10302708 - 10302605
Alignment:
| Q |
179 |
atacctgaatggctaggaaagcagccaagcacgtgcagttacctatcaagaacataactccaaattcaaaattttctgatccaagattcagtaaaccagt |
278 |
Q |
| |
|
||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||| || ||||||||| |||||||||||||||||||||| |
|
|
| T |
10302708 |
atacctgaatggctaggaaagcagccatgaatgtgcagttacctatcaagaacataactccaagtttgaaattttctaatccaagattcagtaaaccagt |
10302609 |
T |
|
| Q |
279 |
aatc |
282 |
Q |
| |
|
|||| |
|
|
| T |
10302608 |
aatc |
10302605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 18 - 282
Target Start/End: Complemental strand, 10287179 - 10286922
Alignment:
| Q |
18 |
gaatgaaaatgctgtcacagataaatatgcaggatacttttttagtaccggcgcctgaaaataattagttattggaaaaaagttaaactttccattgata |
117 |
Q |
| |
|
||||||| ||||||||||||||| || |||||||||||||||||||||||| ||||||||||||||| | | ||| | |||||||| | | ||||| |
|
|
| T |
10287179 |
gaatgaatatgctgtcacagatagatttgcaggatacttttttagtaccggtgcctgaaaataattaatga----aaattaattaaacttgctaatgata |
10287084 |
T |
|
| Q |
118 |
tcaacagtcacttaatgaattnnnnnnnnnnntcatttaatgtatatnnnnnnnnngatcaatacctgaatggctaggaaagcagccaagcacgtgcagt |
217 |
Q |
| |
|
||||||| |||||||||||| |||||||||| |||| ||| |||||||||| |||| ||||||||||| ||||||||||| |
|
|
| T |
10287083 |
gcaacagttacttaatgaattaaaaaaaa---tcatttaatggatataacaaaaaagatagatacctgaatcgctaagaaagcagccatgcacgtgcagt |
10286987 |
T |
|
| Q |
218 |
tacctatcaagaacataactccaaattcaaaattttctgatccaagattcagtaaaccagtaatc |
282 |
Q |
| |
|
| ||||||||||||| |||||||| ||||||||| || ||||||||||| |||||||||||||| |
|
|
| T |
10286986 |
tgcctatcaagaacacaactccaagttcaaaattatccaatccaagattctgtaaaccagtaatc |
10286922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 179 - 276
Target Start/End: Original strand, 10280187 - 10280284
Alignment:
| Q |
179 |
atacctgaatggctaggaaagcagccaagcacgtgcagttacctatcaagaacataactccaaattcaaaattttctgatccaagattcagtaaacca |
276 |
Q |
| |
|
||||| |||||| |||||||||||||| |||| | ||| ||||||||||||| |||||||| ||||||||| ||| ||||||||||| |||||||| |
|
|
| T |
10280187 |
ataccagaatggttaggaaagcagccatgcacatagtgttccctatcaagaacacaactccaagttcaaaattatctaatccaagattctgtaaacca |
10280284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 10279537 - 10279601
Alignment:
| Q |
18 |
gaatgaaaatgctgtcacagataaatatgcaggatacttttttagtaccggcgcctgaaaataat |
82 |
Q |
| |
|
||||||| ||||||| ||||||| || ||||||||||||||||| ||| |||||||||||||||| |
|
|
| T |
10279537 |
gaatgaatatgctgttacagatagatttgcaggatacttttttaatacaggcgcctgaaaataat |
10279601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 84
Target Start/End: Original strand, 10265353 - 10265417
Alignment:
| Q |
20 |
atgaaaatgctgtcacagataaatatgcaggatacttttttagtaccggcgcctgaaaataatta |
84 |
Q |
| |
|
||||| ||||||| || ||||| | ||||||||| ||||||| ||| || ||||||||||||||| |
|
|
| T |
10265353 |
atgaatatgctgtgacggataagtttgcaggatatttttttaatactggtgcctgaaaataatta |
10265417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 276
Target Start/End: Complemental strand, 30581501 - 30581405
Alignment:
| Q |
180 |
tacctgaatggctaggaaagcagccaagcacgtgcagttacctatcaagaacataactccaaattcaaaattttctgatccaagattcagtaaacca |
276 |
Q |
| |
|
||||||||||| ||| |||| ||||| |||| ||||||| ||||| ||| ||| ||| |||| | ||||| ||| |||||||||||| ||||||| |
|
|
| T |
30581501 |
tacctgaatggatagaaaagtagccatgcacatgcagtttcctattaagcacagaaccccaacatgaaaatggtctaatccaagattcattaaacca |
30581405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University