View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17152_high_70 (Length: 275)

Name: NF17152_high_70
Description: NF17152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17152_high_70
NF17152_high_70
[»] chr8 (2 HSPs)
chr8 (1-270)||(11402055-11402324)
chr8 (63-158)||(11403127-11403222)
[»] chr2 (4 HSPs)
chr2 (42-163)||(42300562-42300683)
chr2 (42-163)||(42913325-42913446)
chr2 (196-270)||(42913497-42913571)
chr2 (196-270)||(42300437-42300511)
[»] chr4 (5 HSPs)
chr4 (42-163)||(27730425-27730546)
chr4 (42-163)||(45965976-45966097)
chr4 (196-270)||(27730597-27730671)
chr4 (196-270)||(45965851-45965925)
chr4 (196-262)||(24146599-24146665)
[»] chr6 (2 HSPs)
chr6 (196-270)||(29303584-29303658)
chr6 (42-163)||(29303709-29303830)
[»] chr5 (4 HSPs)
chr5 (196-270)||(12529384-12529458)
chr5 (196-270)||(35841564-35841638)
chr5 (42-163)||(12529212-12529333)
chr5 (42-163)||(35841689-35841810)
[»] chr1 (3 HSPs)
chr1 (196-270)||(29282638-29282712)
chr1 (196-270)||(49220633-49220707)
chr1 (42-163)||(29282466-29282587)


Alignment Details
Target: chr8 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 11402324 - 11402055
Alignment:
Q  1 ttctgcaatattctgttgacgtgactttcgatacttccctgcaaggtatcaatatcgtggagctccattatcgtagtcaccacatgatcaactttcatca 100  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11402324 ttctgcaatattctgttgatgtgacttttgatacttccctgcaaggtatcaatatcgtggagctccattatcgtagtcaccacatgatcaactttcatca 11402225  T
Q  101 acatattacatagacttttctccaccaccttgttatccataatattttctccatacacgctcaaattttgtaacgggagaaaaatattgttccatgaact 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  11402224 acatattacatagacttttctccaccaccttgttatccataatattttctccatacacgctcaaattttgtaacaggagaaaaatattgttccatgaact 11402125  T
Q  201 tgacatttcatacctttcgtaatctctacacagagattgcagtttttatttcggagttttctctgctcct 270  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  11402124 tgacatttcatacctttcgtaatctctacacagagattgcagtttttatttcggagttttctctactcct 11402055  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 63 - 158
Target Start/End: Original strand, 11403127 - 11403222
Alignment:
Q  63 ctccattatcgtagtcaccacatgatcaactttcatcaacatattacatagacttttctccaccaccttgttatccataatattttctccatacac 158  Q
    ||||||||||||||||||||||||| |||  || ||| ||||| |   |||| ||||||||||||||||| |||||  ||||| ||||||||||||    
T  11403127 ctccattatcgtagtcaccacatgaccaaactttatcgacatagtgtgtagaattttctccaccaccttgctatccggaatatcttctccatacac 11403222  T

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Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 42 - 163
Target Start/End: Complemental strand, 42300683 - 42300562
Alignment:
Q  42 caaggtatcaatatcgtggagctccattatcgtagtcaccacatgatcaactttcatcaacatattacatagacttttctccaccaccttgttatccata 141  Q
    |||||||||  ||||||||  ||||| ||||||||||||||||||||||  |||||||  |||  | |||||| ||||||||||||||||| ||||   |    
T  42300683 caaggtatcggtatcgtgggactccaatatcgtagtcaccacatgatcatatttcatcggcatggtgcatagaattttctccaccaccttgctatcttga 42300584  T
Q  142 atattttctccatacacgctca 163  Q
    |||| |||||||||||| ||||    
T  42300583 atatcttctccatacactctca 42300562  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 42 - 163
Target Start/End: Original strand, 42913325 - 42913446
Alignment:
Q  42 caaggtatcaatatcgtggagctccattatcgtagtcaccacatgatcaactttcatcaacatattacatagacttttctccaccaccttgttatccata 141  Q
    |||||||||  |||| |||  ||||| ||||||||||||||||||||||  |||||||  |||  | | |||| ||||||||||||||||| ||||   |    
T  42913325 caaggtatcggtatcatgggactccaatatcgtagtcaccacatgatcatatttcatcggcatggtgcgtagaattttctccaccaccttgctatcttga 42913424  T
Q  142 atattttctccatacacgctca 163  Q
    |||| |||||||||||| ||||    
T  42913425 atatcttctccatacactctca 42913446  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 196 - 270
Target Start/End: Original strand, 42913497 - 42913571
Alignment:
Q  196 gaacttgacatttcatacctttcgtaatctctacacagagattgcagtttttatttcggagttttctctgctcct 270  Q
    ||||| |||||||||||||||||||| ||||||| |||||| ||||  ||| ||||| ||| ||||||| |||||    
T  42913497 gaactggacatttcatacctttcgtattctctacgcagagactgcaactttgatttctgagctttctctactcct 42913571  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 270
Target Start/End: Complemental strand, 42300511 - 42300437
Alignment:
Q  196 gaacttgacatttcatacctttcgtaatctctacacagagattgcagtttttatttcggagttttctctgctcct 270  Q
    ||||| |||||||||||||||||||| ||||||| |||||| ||||  ||| |||||  || ||||||| |||||    
T  42300511 gaactggacatttcatacctttcgtattctctacgcagagactgcaactttgatttctaagctttctctactcct 42300437  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 42 - 163
Target Start/End: Original strand, 27730425 - 27730546
Alignment:
Q  42 caaggtatcaatatcgtggagctccattatcgtagtcaccacatgatcaactttcatcaacatattacatagacttttctccaccaccttgttatccata 141  Q
    |||||||||| |||| |||  ||||| ||||||||||||||||||||||  |||||||  |||  | | |||| ||||||||||||||||| ||||   |    
T  27730425 caaggtatcagtatcatgggactccaatatcgtagtcaccacatgatcatatttcatcggcatggtgcgtagaattttctccaccaccttgctatcttga 27730524  T
Q  142 atattttctccatacacgctca 163  Q
    |||| |||||||||||| ||||    
T  27730525 atatcttctccatacactctca 27730546  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 42 - 163
Target Start/End: Complemental strand, 45966097 - 45965976
Alignment:
Q  42 caaggtatcaatatcgtggagctccattatcgtagtcaccacatgatcaactttcatcaacatattacatagacttttctccaccaccttgttatccata 141  Q
    ||||||||| ||||| |||  ||||| ||||||||||||||||||||||  |||||||  |||  | | |||| ||||||||||||||||| ||||   |    
T  45966097 caaggtatcgatatcatgggactccaatatcgtagtcaccacatgatcatatttcatcggcatggtgcgtagaattttctccaccaccttgctatcttga 45965998  T
Q  142 atattttctccatacacgctca 163  Q
    |||| |||||||||||| ||||    
T  45965997 atatcttctccatacactctca 45965976  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 196 - 270
Target Start/End: Original strand, 27730597 - 27730671
Alignment:
Q  196 gaacttgacatttcatacctttcgtaatctctacacagagattgcagtttttatttcggagttttctctgctcct 270  Q
    ||||| |||||||||||||||||||| ||||||| |||||| ||||| ||| ||||| ||| ||||||| |||||    
T  27730597 gaactggacatttcatacctttcgtattctctacgcagagactgcagctttgatttctgagctttctctactcct 27730671  T

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Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 196 - 270
Target Start/End: Complemental strand, 45965925 - 45965851
Alignment:
Q  196 gaacttgacatttcatacctttcgtaatctctacacagagattgcagtttttatttcggagttttctctgctcct 270  Q
    ||||| |||||||||||||||||||| ||||||| |||||| ||||| ||| ||||| ||| ||||||| |||||    
T  45965925 gaactggacatttcatacctttcgtattctctacgcagagactgcagctttgatttctgagctttctctactcct 45965851  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 262
Target Start/End: Complemental strand, 24146665 - 24146599
Alignment:
Q  196 gaacttgacatttcatacctttcgtaatctctacacagagattgcagtttttatttcggagttttct 262  Q
    ||||| |||||||||||||||||||| ||||||| |||||| ||||  ||| ||||| ||| |||||    
T  24146665 gaactagacatttcatacctttcgtactctctacgcagagactgcaactttgatttctgagctttct 24146599  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 196 - 270
Target Start/End: Complemental strand, 29303658 - 29303584
Alignment:
Q  196 gaacttgacatttcatacctttcgtaatctctacacagagattgcagtttttatttcggagttttctctgctcct 270  Q
    ||||| |||||||||||||||||||| ||||||| |||||| ||||| ||| ||||| ||| ||||||| |||||    
T  29303658 gaactggacatttcatacctttcgtattctctacgcagagactgcagctttgatttctgagctttctctactcct 29303584  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 42 - 163
Target Start/End: Complemental strand, 29303830 - 29303709
Alignment:
Q  42 caaggtatcaatatcgtggagctccattatcgtagtcaccacatgatcaactttcatcaacatattacatagacttttctccaccaccttgttatccata 141  Q
    |||||||||  |||| |||  ||||| ||||||||||||||||||||||  |||||||  |||  | | |||| ||||||||||||||||| ||||   |    
T  29303830 caaggtatcggtatcatgggactccaatatcgtagtcaccacatgatcatatttcatcggcatggtgcgtagaattttctccaccaccttgctatcttga 29303731  T
Q  142 atattttctccatacacgctca 163  Q
    |||| |||||||||||| ||||    
T  29303730 atatcttctccatacactctca 29303709  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 196 - 270
Target Start/End: Original strand, 12529384 - 12529458
Alignment:
Q  196 gaacttgacatttcatacctttcgtaatctctacacagagattgcagtttttatttcggagttttctctgctcct 270  Q
    ||||| |||||||||||||||||||| ||||||| |||||| ||||| ||| ||||| ||| ||||||| |||||    
T  12529384 gaactggacatttcatacctttcgtattctctacgcagagactgcagctttgatttctgagctttctctactcct 12529458  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 196 - 270
Target Start/End: Complemental strand, 35841638 - 35841564
Alignment:
Q  196 gaacttgacatttcatacctttcgtaatctctacacagagattgcagtttttatttcggagttttctctgctcct 270  Q
    ||||| |||||||||||||||||||| ||||||| |||||| ||||| ||| ||||| ||| ||||||| |||||    
T  35841638 gaactggacatttcatacctttcgtattctctacgcagagactgcagctttgatttctgagctttctctactcct 35841564  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 42 - 163
Target Start/End: Original strand, 12529212 - 12529333
Alignment:
Q  42 caaggtatcaatatcgtggagctccattatcgtagtcaccacatgatcaactttcatcaacatattacatagacttttctccaccaccttgttatccata 141  Q
    |||||||||  |||| |||  ||||| ||||||||||||||||||||||  |||||||  |||  | | |||| ||||||||||||||||| ||||   |    
T  12529212 caaggtatcggtatcatgggactccaatatcgtagtcaccacatgatcatatttcatcggcatggtgcgtagaattttctccaccaccttgctatcttga 12529311  T
Q  142 atattttctccatacacgctca 163  Q
    |||| |||||||||||| ||||    
T  12529312 atatcttctccatacactctca 12529333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 42 - 163
Target Start/End: Complemental strand, 35841810 - 35841689
Alignment:
Q  42 caaggtatcaatatcgtggagctccattatcgtagtcaccacatgatcaactttcatcaacatattacatagacttttctccaccaccttgttatccata 141  Q
    |||||||||| |||| |||  ||||| |||| |||||||||||||||||  |||||||  |||  | | |||| ||||||||||||||||| ||||   |    
T  35841810 caaggtatcagtatcatgggactccaatatcatagtcaccacatgatcatatttcatcggcatggtgcgtagaattttctccaccaccttgctatcttga 35841711  T
Q  142 atattttctccatacacgctca 163  Q
    |||| |||||||||||| ||||    
T  35841710 atatcttctccatacactctca 35841689  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 196 - 270
Target Start/End: Original strand, 29282638 - 29282712
Alignment:
Q  196 gaacttgacatttcatacctttcgtaatctctacacagagattgcagtttttatttcggagttttctctgctcct 270  Q
    ||||| |||||||||||||||||||| ||||||| |||||| ||||| ||| ||||| ||| ||||||| |||||    
T  29282638 gaactggacatttcatacctttcgtattctctacgcagagactgcagctttgatttctgagctttctctactcct 29282712  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 196 - 270
Target Start/End: Original strand, 49220633 - 49220707
Alignment:
Q  196 gaacttgacatttcatacctttcgtaatctctacacagagattgcagtttttatttcggagttttctctgctcct 270  Q
    ||||| |||||||||||||||||||| ||||||| |||||| ||||| ||| ||||| ||| ||||||| |||||    
T  49220633 gaactggacatttcatacctttcgtattctctacgcagagactgcagctttgatttctgagctttctctactcct 49220707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 42 - 163
Target Start/End: Original strand, 29282466 - 29282587
Alignment:
Q  42 caaggtatcaatatcgtggagctccattatcgtagtcaccacatgatcaactttcatcaacatattacatagacttttctccaccaccttgttatccata 141  Q
    |||||||||  |||| |||  ||||| ||||||||||||||||||||||  |||||||  |||  | | |||| ||||||||||||||||| ||||   |    
T  29282466 caaggtatcggtatcatgggactccaatatcgtagtcaccacatgatcatatttcatcggcatggtgcgtagaattttctccaccaccttgctatcttga 29282565  T
Q  142 atattttctccatacacgctca 163  Q
    |||| |||||||||||| ||||    
T  29282566 atatcttctccatacactctca 29282587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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