View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17152_high_71 (Length: 274)
Name: NF17152_high_71
Description: NF17152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17152_high_71 |
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Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 17 - 265
Target Start/End: Original strand, 41447779 - 41448027
Alignment:
| Q |
17 |
attcatgaggcttaatcttgaatcttttctccctaaagacgccaaattcgatgtatttcattgtatgaacacacttgaagatctagtttgatagctcaat |
116 |
Q |
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| T |
41447779 |
attcatgaggcttaaccttgaatcttttctctctaaagacgccaaattcgatgtatttcattgtatgaacacacttgaagatctagtttgatagctcaat |
41447878 |
T |
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| Q |
117 |
gtatgtttacttttcaagtgatattcatcaaagttttaactggcagggttaaattcaaacaataaggtttccgttgtatcagtacctcaaaccgctcaaa |
216 |
Q |
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| T |
41447879 |
gtatgcttactttacaagtgatattcatcaaagttttaactggcagggttaaattcaaacaataaggtttccgctgtatcagtacctcaaaccgctcaaa |
41447978 |
T |
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| Q |
217 |
ctgagggtgagattttgcagtcatccaatttaaagagctatacctatgc |
265 |
Q |
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| T |
41447979 |
ctgagggtgagattttgcagtcatccaatttaaagagctatacctatgc |
41448027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 65 - 265
Target Start/End: Original strand, 41458199 - 41458401
Alignment:
| Q |
65 |
cgatgtatttcattgtatgaacacacttgaagatctagtttgatagctcaatgtatgt---ttacttttcaagtgatattcatcaaagttttaactggca |
161 |
Q |
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| T |
41458199 |
cgatgtatttcattgtatgaacacacttgaagatctagtttgatagctcaata-atgtatattacttttcatgtgatattcatgaatgttttaactggca |
41458297 |
T |
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| Q |
162 |
gggttaaattcaaacaataaggtttccgttgtatcagtacctcaaaccgctcaaactgagggtgagattttgcagtcatccaatttaaagagctatacct |
261 |
Q |
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| T |
41458298 |
gggttaaattcaaacaataaggtttccgctgtatcagtgcctccgaccgctcaaagtgagggtgagatcttgccgtcatccactttaaagagctatacct |
41458397 |
T |
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| Q |
262 |
atgc |
265 |
Q |
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|||| |
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| T |
41458398 |
atgc |
41458401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 33 - 144
Target Start/End: Original strand, 41441321 - 41441431
Alignment:
| Q |
33 |
cttgaatcttttctccctaaagacgccaaattcgatgtatttcattgtatgaacacacttgaagatctagtttgatagctcaatgtatgtttacttttca |
132 |
Q |
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||||||| ||||||| ||||| |||||||| ||| |||||||||||| |||||| ||||||||| |||||||||||||||||||| |||| ||||| |
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| T |
41441321 |
cttgaatattttctcaataaaggtgccaaatttgattcatttcattgtataaacacaattgaagatccggtttgatagctcaatgtatg-ttacatttca |
41441419 |
T |
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| Q |
133 |
agtgatattcat |
144 |
Q |
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| T |
41441420 |
tgtgatattcat |
41441431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 219 - 261
Target Start/End: Original strand, 41441573 - 41441615
Alignment:
| Q |
219 |
gagggtgagattttgcagtcatccaatttaaagagctatacct |
261 |
Q |
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| T |
41441573 |
gagggcgagatcttgcagtcatcaaatttaaagagctatacct |
41441615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 33 - 171
Target Start/End: Complemental strand, 16418649 - 16418518
Alignment:
| Q |
33 |
cttgaatcttttctccctaaagacgccaaattcgatgtatttcattgtatgaacacacttgaagatctagtttgatagctcaatgtatgtttacttttca |
132 |
Q |
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||||||| |||||||||| |||| ||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
16418649 |
cttgaatattttctccctcaagatgccaaattcgatgaa-------gtatgaacacacttgaagatctagtttgatagctcgatgtatgtttacttttca |
16418557 |
T |
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| Q |
133 |
agtgatattcatcaaagttttaactggcagggttaaatt |
171 |
Q |
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| T |
16418556 |
agtgattttcatgaaagttttaactggcagggttaaatt |
16418518 |
T |
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