View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17152_high_80 (Length: 243)
Name: NF17152_high_80
Description: NF17152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17152_high_80 |
 | |
|
| [»] scaffold0090 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 1090692 - 1090921
Alignment:
| Q |
1 |
catgagaaatctctt-gagtctcatttcctaacaattttttccaactataatatttagggtacactacctacagatgggcaagagattgccgtcaaaagg |
99 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
1090692 |
catgagaaatctcttagagtctcatttcctaacaattttttccaactataatatttagggtacactagctacagatgggcaagagattgccgtcaaaagg |
1090791 |
T |
|
| Q |
100 |
ctttcaggaagttcaaaacaaggatcaaaagaatttaaaaatgaagttatattatgtgcaaaacttcaacatcgaaatcttgttaaggttcttggttgtt |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1090792 |
ctttcaggaagttcaaaacaaggatcaaaagaatttaaaaatgaagttatattatgtgcaaaacttcaacatcgaaatcttgttaaggttcttggttgtt |
1090891 |
T |
|
| Q |
200 |
gcattcaaggagaagagagaatgcttatct |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
1090892 |
gcattcaaggagaagagagaatgcttatct |
1090921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 1076886 - 1077115
Alignment:
| Q |
1 |
catgagaaatctctt-gagtctcatttcctaacaattttttccaactataatatttagggtacactacctacagatgggcaagagattgccgtcaaaagg |
99 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||| |
|
|
| T |
1076886 |
catgagaaatctcttagagtctcatttcctaacaattttttccaactataatatttagggtacactagctatggatgggcgagagattgccgtcaaaagg |
1076985 |
T |
|
| Q |
100 |
ctttcaggaagttcaaaacaaggatcaaaagaatttaaaaatgaagttatattatgtgcaaaacttcaacatcgaaatcttgttaaggttcttggttgtt |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1076986 |
ctttcaggaagttcaaaacaaggatcaaaagaatttaaaaatgaagttatattatgtgcaaaacttcaacatcgaaatcttgttaaggttcttggttgtt |
1077085 |
T |
|
| Q |
200 |
gcattcaaggagaagagagaatgcttatct |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
1077086 |
gcattcaaggagaagagagaatgcttatct |
1077115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 1300134 - 1299905
Alignment:
| Q |
1 |
catgagaaatctctt-gagtctcatttcctaacaattttttccaactataatatttagggtacactacctacagatgggcaagagattgccgtcaaaagg |
99 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||| |
|
|
| T |
1300134 |
catgagaaatctcttagagtctcatttcctaacaattttttccaactataatatttagggtacactagctatggatgggcgagagattgccgtcaaaagg |
1300035 |
T |
|
| Q |
100 |
ctttcaggaagttcaaaacaaggatcaaaagaatttaaaaatgaagttatattatgtgcaaaacttcaacatcgaaatcttgttaaggttcttggttgtt |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1300034 |
ctttcaggaagttcaaaacaaggatcaaaagaatttaaaaatgaagttatattatgtgcaaaacttcaacatcgaaatcttgttaaggttcttggttgtt |
1299935 |
T |
|
| Q |
200 |
gcattcaaggagaagagagaatgcttatct |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
1299934 |
gcattcaaggagaagagagaatgcttatct |
1299905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 1049970 - 1050198
Alignment:
| Q |
1 |
catgagaaatctcttgagtctcatttcctaacaattttttccaactataatatttagggtacactacctacagatgggcaagagattgccgtcaaaaggc |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
1049970 |
catgagaaatctcttgagtctcattttctaacaattttttccaactataatatttagggtacactagctacagatgggcaagagattgccgtcaaaaggc |
1050069 |
T |
|
| Q |
101 |
tttcaggaagttcaaaacaaggatcaaaagaatttaaaaatgaagttatattatgtgcaaaacttcaacatcgaaatcttgttaaggttcttggttgttg |
200 |
Q |
| |
|
||||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
1050070 |
tttcaggaagttcgaaacaaggaacaagagaatttaaaaatgaagttatattatgtgcaaaacttcaacaccgaaatcttgttaaggttcttggttgttg |
1050169 |
T |
|
| Q |
201 |
cattcaaggagaagagagaatgcttatct |
229 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
1050170 |
cattcaaggagaagagagaatgcttatct |
1050198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 2 - 229
Target Start/End: Original strand, 1107089 - 1107316
Alignment:
| Q |
2 |
atgagaaatctcttgagtctcatttcctaacaattttttccaactataatatttagggtacactacctacagatgggcaagagattgccgtcaaaaggct |
101 |
Q |
| |
|
|||||||| | |||||||||| ||| |||||||||||||| |||||||| |||||||||||||| | ||| | | ||||||||||||||||||||| |
|
|
| T |
1107089 |
atgagaaaacccttgagtctctttttctaacaattttttctaactataaaatttagggtacacttgttctagacagacgagagattgccgtcaaaaggct |
1107188 |
T |
|
| Q |
102 |
ttcaggaagttcaaaacaaggatcaaaagaatttaaaaatgaagttatattatgtgcaaaacttcaacatcgaaatcttgttaaggttcttggttgttgc |
201 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||||||||||||||||||| |||||| | ||||||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
1107189 |
ttcaggaagttcaaaacaaggaacaagagaatttaaaaatgaagttattttatgttcgaaacttcaacaccgaaatcttgtcaaggttcttggttgttgt |
1107288 |
T |
|
| Q |
202 |
attcaaggagaagagagaatgcttatct |
229 |
Q |
| |
|
|||||||||||||||| ||||||||||| |
|
|
| T |
1107289 |
attcaaggagaagagaaaatgcttatct |
1107316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 74 - 222
Target Start/End: Original strand, 13854732 - 13854880
Alignment:
| Q |
74 |
atgggcaagagattgccgtcaaaaggctttcaggaagttcaaaacaaggatcaaaagaatttaaaaatgaagttatattatgtgcaaaacttcaacatcg |
173 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||| | ||||| ||||||| | ||||| ||| |||||||||||||||||||| | ||||||||||| || |
|
|
| T |
13854732 |
atgggcaagaaattgctgtcaaaaggctttcaaggagttctggacaaggacctaaagagttttaaaatgaagttatattatgtactaaacttcaacaccg |
13854831 |
T |
|
| Q |
174 |
aaatcttgttaaggttcttggttgttgcattcaaggagaagagagaatg |
222 |
Q |
| |
|
||||||||| |||||| |||||||||| ||| |||||||||||| |||| |
|
|
| T |
13854832 |
aaatcttgtaaaggttgttggttgttgtattgaaggagaagagaaaatg |
13854880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 85 - 212
Target Start/End: Original strand, 28419535 - 28419662
Alignment:
| Q |
85 |
attgccgtcaaaaggctttcaggaagttcaaaacaaggatcaaaagaatttaaaaatgaagttatattatgtgcaaaacttcaacatcgaaatcttgtta |
184 |
Q |
| |
|
||||| |||||||| |||||||||| ||| | |||||||| |||||||||||||||||||| ||||| || | ||| | ||||||||||||||||||| |
|
|
| T |
28419535 |
attgcagtcaaaagactttcaggaaattctgagcaaggatcgaaagaatttaaaaatgaagtcatattgtgcgttaaattgcaacatcgaaatcttgtta |
28419634 |
T |
|
| Q |
185 |
aggttcttggttgttgcattcaaggaga |
212 |
Q |
| |
|
|||||||||||||||||||| ||||||| |
|
|
| T |
28419635 |
aggttcttggttgttgcattgaaggaga |
28419662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 72 - 212
Target Start/End: Original strand, 28432753 - 28432893
Alignment:
| Q |
72 |
agatgggcaagagattgccgtcaaaaggctttcaggaagttcaaaacaaggatcaaaagaatttaaaaatgaagttatattatgtgcaaaacttcaacat |
171 |
Q |
| |
|
|||||| ||||| |||| |||||||| |||||||||| ||| ||||||| |||||||||||||||||||| ||||| ||||| ||| | |||||| |
|
|
| T |
28432753 |
agatggacaagaagttgcagtcaaaagactttcaggaaattcttgtcaaggattgaaagaatttaaaaatgaagtcatattgtgtgctaaattgcaacat |
28432852 |
T |
|
| Q |
172 |
cgaaatcttgttaaggttcttggttgttgcattcaaggaga |
212 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
28432853 |
cgaaatcttgttaaggttattggttgttgcattgaaggaga |
28432893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 117 - 222
Target Start/End: Complemental strand, 22689791 - 22689686
Alignment:
| Q |
117 |
acaaggatcaaaagaatttaaaaatgaagttatattatgtgcaaaacttcaacatcgaaatcttgttaaggttcttggttgttgcattcaaggagaagag |
216 |
Q |
| |
|
||||||||||| |||||||||||||||||| ||||| || || ||| | |||||||||||||||||||||||| |||||||||||||| ||||||| ||| |
|
|
| T |
22689791 |
acaaggatcaatagaatttaaaaatgaagtcatattgtgcgctaaattgcaacatcgaaatcttgttaaggttattggttgttgcattgaaggagacgag |
22689692 |
T |
|
| Q |
217 |
agaatg |
222 |
Q |
| |
|
| |||| |
|
|
| T |
22689691 |
aaaatg |
22689686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0090 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0090
Description:
Target: scaffold0090; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 73 - 222
Target Start/End: Complemental strand, 8765 - 8616
Alignment:
| Q |
73 |
gatgggcaagagattgccgtcaaaaggctttcaggaagttcaaaacaaggatcaaaagaatttaaaaatgaagttatattatgtgcaaaacttcaacatc |
172 |
Q |
| |
|
||||| ||||| ||||| ||||||||||||||| | ||||| ||||||| ||||| ||||| |||||||||||||||||| | ||||||||||| | |
|
|
| T |
8765 |
gatggacaagaaattgctgtcaaaaggctttcaaggagttctggacaaggacttaaagagtttaagaatgaagttatattatgtactaaacttcaacacc |
8666 |
T |
|
| Q |
173 |
gaaatcttgttaaggttcttggttgttgcattcaaggagaagagagaatg |
222 |
Q |
| |
|
||||||||||||||||| |||||||||| ||| ||||||| |||| |||| |
|
|
| T |
8665 |
gaaatcttgttaaggttgttggttgttgtattgaaggagatgagaaaatg |
8616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 72 - 204
Target Start/End: Original strand, 23555101 - 23555233
Alignment:
| Q |
72 |
agatgggcaagagattgccgtcaaaaggctttcaggaagttcaaaacaaggatcaaaagaatttaaaaatgaagttatattatgtgcaaaacttcaacat |
171 |
Q |
| |
|
|||||| ||||| || || |||||||| ||||| || | ||| | |||||||| |||||||||| | |||||| ||||||||||| ||||||||||| |
|
|
| T |
23555101 |
agatggtcaagaaatagcagtcaaaagactttctgggaattctatacaaggattggaagaatttaagagtgaagtaatattatgtgctaaacttcaacac |
23555200 |
T |
|
| Q |
172 |
cgaaatcttgttaaggttcttggttgttgcatt |
204 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |
|
|
| T |
23555201 |
cgaaatcttgttaaggtgattggttgttgcatt |
23555233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 206
Target Start/End: Complemental strand, 23285724 - 23285651
Alignment:
| Q |
133 |
tttaaaaatgaagttatattatgtgcaaaacttcaacatcgaaatcttgttaaggttcttggttgttgcattca |
206 |
Q |
| |
|
||||||||||||||| | || ||||||||||||||| || |||||||| ||| |||||||||| |||||||| |
|
|
| T |
23285724 |
tttaaaaatgaagttgtgttgattgcaaaacttcaacaccgtaatcttgtgaagcttcttggttgctgcattca |
23285651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 206
Target Start/End: Original strand, 23392841 - 23392914
Alignment:
| Q |
133 |
tttaaaaatgaagttatattatgtgcaaaacttcaacatcgaaatcttgttaaggttcttggttgttgcattca |
206 |
Q |
| |
|
||||||||||||||| | || ||| ||||||||||| || |||||||| ||| |||||||||| |||||||| |
|
|
| T |
23392841 |
tttaaaaatgaagttgtgttgattgcgaaacttcaacaccgtaatcttgtgaagcttcttggttgctgcattca |
23392914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 161 - 215
Target Start/End: Complemental strand, 2662894 - 2662840
Alignment:
| Q |
161 |
aacttcaacatcgaaatcttgttaaggttcttggttgttgcattcaaggagaaga |
215 |
Q |
| |
|
||||||||||||||||||| || ||| ||||||||||||| |||||||||||||| |
|
|
| T |
2662894 |
aacttcaacatcgaaatctcgtcaagcttcttggttgttgtattcaaggagaaga |
2662840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 130 - 224
Target Start/End: Original strand, 34328530 - 34328624
Alignment:
| Q |
130 |
gaatttaaaaatgaagttatattatgtgcaaaacttcaacatcgaaatcttgttaaggttcttggttgttgcattcaaggagaagagagaatgct |
224 |
Q |
| |
|
||||||||||| ||||| | ||| ||| ||||||||||| ||||||||||| ||| |||||||||||||| || ||||||| |||| |||||| |
|
|
| T |
34328530 |
gaatttaaaaacgaagtaaaattgattgcgaaacttcaacaccgaaatcttgtaaagcttcttggttgttgccttgaaggagaggagaaaatgct |
34328624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 215
Target Start/End: Original strand, 31740276 - 31740335
Alignment:
| Q |
156 |
tgcaaaacttcaacatcgaaatcttgttaaggttcttggttgttgcattcaaggagaaga |
215 |
Q |
| |
|
||||||||||||||| |||||||| | ||| | || ||||||||||||||||||||||| |
|
|
| T |
31740276 |
tgcaaaacttcaacaccgaaatctactaaagctgctaggttgttgcattcaaggagaaga |
31740335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 210
Target Start/End: Original strand, 31732710 - 31732764
Alignment:
| Q |
156 |
tgcaaaacttcaacatcgaaatcttgttaaggttcttggttgttgcattcaagga |
210 |
Q |
| |
|
||||||||||||||| |||||||| || ||| | || |||||||||||||||||| |
|
|
| T |
31732710 |
tgcaaaacttcaacaccgaaatctagtaaagctgctaggttgttgcattcaagga |
31732764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 210
Target Start/End: Original strand, 31745611 - 31745665
Alignment:
| Q |
156 |
tgcaaaacttcaacatcgaaatcttgttaaggttcttggttgttgcattcaagga |
210 |
Q |
| |
|
||||||||||||||| |||||||| || ||| | || |||||||||||||||||| |
|
|
| T |
31745611 |
tgcaaaacttcaacaccgaaatctagtaaagctgctaggttgttgcattcaagga |
31745665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 200
Target Start/End: Original strand, 31696812 - 31696856
Alignment:
| Q |
156 |
tgcaaaacttcaacatcgaaatcttgttaaggttcttggttgttg |
200 |
Q |
| |
|
||||||||||||||| |||||||| |||||| ||||||| ||||| |
|
|
| T |
31696812 |
tgcaaaacttcaacaccgaaatctggttaagcttcttggctgttg |
31696856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 200
Target Start/End: Original strand, 31707904 - 31707948
Alignment:
| Q |
156 |
tgcaaaacttcaacatcgaaatcttgttaaggttcttggttgttg |
200 |
Q |
| |
|
||||||||||||||| |||||||| |||||| ||||||| ||||| |
|
|
| T |
31707904 |
tgcaaaacttcaacaccgaaatctggttaagcttcttggctgttg |
31707948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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