View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17152_high_83 (Length: 240)
Name: NF17152_high_83
Description: NF17152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17152_high_83 |
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Alignment Details
Target: chr8 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 11063673 - 11063877
Alignment:
| Q |
1 |
tttgttccaaaaatgaggctggtgtgccttccagctgctgcatctcttcctctaccgtaggatgggagtggtttgatcacaggccactcattaatatcct |
100 |
Q |
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| T |
11063673 |
tttgttccaaaaatgaggctggtgtgccttccagctgctgcatctcttcctctaccgtaggatgggagtggtttgatcacaggccactcattaatatcct |
11063772 |
T |
|
| Q |
101 |
aaaccattatatatttaatacaataggaatgaatacccatgttagcaatgtcacacatgaaagtgccaaaaatgtgtcacattattgtaccattcacaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11063773 |
aaaccattatatatttaatacaataggaatgaatacccat----------------atgaaagtgccaaaaatgtgtcacattattgtaccattcacaaa |
11063856 |
T |
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| Q |
201 |
gttagtgtgtggtttggtgat |
221 |
Q |
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||||||||||||||||||||| |
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| T |
11063857 |
gttagtgtgtggtttggtgat |
11063877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 29764324 - 29764222
Alignment:
| Q |
1 |
tttgttccaaaaatgaggctggtgtgccttccagctgctgcatctcttcctctaccgtaggatgggagtggtttgatcacaggccactcattaatatcct |
100 |
Q |
| |
|
||||||||||| |||||||| || ||||| |||| ||||||||||||||||||||| ||||| | ||||| | ||||||||||||| | ||||||| |
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| T |
29764324 |
tttgttccaaatatgaggcttctgaatcttcctgctggtgcatctcttcctctaccgtatgatggtaatggttcaagcacaggccactcagttatatcct |
29764225 |
T |
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| Q |
101 |
aaa |
103 |
Q |
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||| |
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| T |
29764224 |
aaa |
29764222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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