View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17152_high_87 (Length: 233)

Name: NF17152_high_87
Description: NF17152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17152_high_87
NF17152_high_87
[»] chr4 (3 HSPs)
chr4 (3-86)||(54045339-54045423)
chr4 (16-69)||(2922066-2922118)
chr4 (16-69)||(2923316-2923368)
[»] chr2 (4 HSPs)
chr2 (16-87)||(25331844-25331914)
chr2 (16-68)||(25323674-25323725)
chr2 (24-85)||(7739201-7739262)
chr2 (24-85)||(36200871-36200932)
[»] chr1 (1 HSPs)
chr1 (16-69)||(34345263-34345315)
[»] chr5 (1 HSPs)
chr5 (16-87)||(18481254-18481324)


Alignment Details
Target: chr4 (Bit Score: 69; Significance: 4e-31; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 3 - 86
Target Start/End: Complemental strand, 54045423 - 54045339
Alignment:
Q  3 ctcattgttattaataaaaaa-tgccacacaagggtggtatgggagtggtattgccacctagggtggtcagagtataagcactca 86  Q
    ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  54045423 ctcattgttattaataaaaaaatgccacacaaaggtggtatgggagtggtattgccacctagggtggtcagcgtataagcactca 54045339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 2922118 - 2922066
Alignment:
Q  16 ataaaaaatgccacacaagggtggtatgggagtggtattgccacctagggtggt 69  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||| |||||    
T  2922118 ataaaaaatgccacacaagggtggtatgggagtggta-tgccacctagagtggt 2922066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 2923316 - 2923368
Alignment:
Q  16 ataaaaaatgccacacaagggtggtatgggagtggtattgccacctagggtggt 69  Q
    |||||||||||||||||||||||| |||||||||||| |||||||||| |||||    
T  2923316 ataaaaaatgccacacaagggtggcatgggagtggta-tgccacctagagtggt 2923368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 3e-16; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 25331844 - 25331914
Alignment:
Q  16 ataaaaaatgccacacaagggtggtatgggagtggtattgccacctagggtggtcagagtataagcactcat 87  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||| |||||  | ||||||| ||||||    
T  25331844 ataaaaaatgccacacaagggtggtatgggagtggta-tgccacctagagtggtatgtgtataagtactcat 25331914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 25323725 - 25323674
Alignment:
Q  16 ataaaaaatgccacacaagggtggtatgggagtggtattgccacctagggtgg 68  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  25323725 ataaaaaatgccacacaagggtggtatgggagtggta-tgccacctagagtgg 25323674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 85
Target Start/End: Complemental strand, 7739262 - 7739201
Alignment:
Q  24 tgccacacaagggtggtatgggagtggtattgccacctagggtggtcagagtataagcactc 85  Q
    |||||||||||||||||||  | |||||||||||||||| |||||| || ||||||| ||||    
T  7739262 tgccacacaagggtggtatatgggtggtattgccacctatggtggttagtgtataaggactc 7739201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 85
Target Start/End: Original strand, 36200871 - 36200932
Alignment:
Q  24 tgccacacaagggtggtatgggagtggtattgccacctagggtggtcagagtataagcactc 85  Q
    |||||||||||||||||||  | |||| ||||||||||| |||||| || ||||||| ||||    
T  36200871 tgccacacaagggtggtatatgggtgggattgccacctatggtggttagtgtataaggactc 36200932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 34345315 - 34345263
Alignment:
Q  16 ataaaaaatgccacacaagggtggtatgggagtggtattgccacctagggtggt 69  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||| |||||    
T  34345315 ataaaaaatgccacacaagggtggtatgggagtggta-tgccacctagagtggt 34345263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 18481324 - 18481254
Alignment:
Q  16 ataaaaaatgccacacaagggtggtatgggagtggtattgccacctagggtggtcagagtataagcactcat 87  Q
    |||||||||||||||||||| |||||||||||||||| |||||||||| |||||  | ||||||| ||||||    
T  18481324 ataaaaaatgccacacaaggatggtatgggagtggta-tgccacctagagtggtatgtgtataagtactcat 18481254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University