View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17152_high_98 (Length: 209)
Name: NF17152_high_98
Description: NF17152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17152_high_98 |
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Alignment Details
Target: chr3 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 9394165 - 9393974
Alignment:
| Q |
1 |
ttatcattgacatgatttattagcgnnnnnnngagacactttatactctgttggggttggggcgagacggcgagtgaaagtggcttaagtgttttatata |
100 |
Q |
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| T |
9394165 |
ttatcattgacatgatttattagcatttttttgagacactttatactctgttggggttggggcgagacggcgagtgaaattggctgaagtgttttatata |
9394066 |
T |
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| Q |
101 |
tttcccacaagactttgtattttgtttcaattcacggtacttgtaaatttttatatattgaaaagagttcaaatttcaaattggtttctttt |
192 |
Q |
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| T |
9394065 |
tttcccacaagactttgtattttgtttcaattcacggtacttgtaaatttttatatattgaaaagagttcaaatttcaaattggttactttt |
9393974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 87 - 186
Target Start/End: Original strand, 9580357 - 9580456
Alignment:
| Q |
87 |
aagtgttttatatatttcccacaagactttgtattttgtttcaattcacggtacttgtaaatttttatatattgaaaagagttcaaatttcaaattggtt |
186 |
Q |
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| T |
9580357 |
aagtattttatatgtttcccaaaacacttggtattttgtttcagttcacggtacttctcatttcttaaatcttgaaaagagttcgaattttgaattggtt |
9580456 |
T |
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