View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17152_low_10 (Length: 578)
Name: NF17152_low_10
Description: NF17152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17152_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 496; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 19 - 567
Target Start/End: Original strand, 42473358 - 42473906
Alignment:
| Q |
19 |
gatttttactctgttctgannnnnnnaatcttcctgctaactatctcaattttacaactttaatcttgcacatgtatatctaatacttattttattaagt |
118 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42473358 |
gatttttactctgttctgatttttttaatcttcctgctaactatctcaattttacaactttaatcttgcacatgtatatctaatacttattttattaagt |
42473457 |
T |
|
| Q |
119 |
agaatcaaagacaatagaagagctgctgctgaggtaaaaagggacaatttggagctgcaaacatgggccgatctccctgctgaagtcttggaattgttct |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42473458 |
agaatcaaagacaatagaagagctgctgctgaggtaaaaagggacaatttggagctgcaaacatgggccgatctccctgctgaagtcttggaattgttct |
42473557 |
T |
|
| Q |
219 |
tgtctcgtttggatgttggggataatattcgtgcttcagctgtttgcaagagatggtgttcagttgccacttctgtacgtgtactcgaccaatcaccttg |
318 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| | |
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| T |
42473558 |
tgtctcgtttggatgttggggataatatccgtgcttcagctgtttgcaagagatggtgttcagttgccacttctgtacgtgtagtggaccaatcacctcg |
42473657 |
T |
|
| Q |
319 |
gcttatgtatttcccaaaaattggtaattgttatgatttttatgaccctatgcagcgtaagactattcccttgagttgccagagttggatggatgtcgtg |
418 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42473658 |
gcttatgtatttcccaaaaattggtaatttttatgatttttatgaccctatgcagcgtaagactattcccttgagttgccagagttggatggatgtcgtg |
42473757 |
T |
|
| Q |
419 |
tttgctatgcaaaagatggttggttattgctaaaccggcatgactggcggagtttggacagagattgcattttttctctctttaatccctttactaggga |
518 |
Q |
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| T |
42473758 |
tttgctatgcaaaagatggttggttattgctaaaccggcatgactagcggaggttggacagagatcgcattttttctctctttaatccctttactaggga |
42473857 |
T |
|
| Q |
519 |
tctgatcacgctgccaagctttaaaaggacataccgaaatgctgccttt |
567 |
Q |
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| T |
42473858 |
tctgatcacgctgccaagctttaaaaggacataccgaaatgctgccttt |
42473906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 64 - 566
Target Start/End: Original strand, 42478946 - 42479443
Alignment:
| Q |
64 |
tcaattttacaactttaatcttgcacatgtatatctaatacttattttattaagtagaatcaaagacaatagaagagctgctgctgaggtaaaaagggac |
163 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |
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| T |
42478946 |
tcaattttacaactttattcttgcacatgtatatctaatacttattttattaagtagaatcaaagacaatagaagagctgctg------taaaaagtgac |
42479039 |
T |
|
| Q |
164 |
aatttggagctgcaaacatgggccgatctccctgctgaagtcttggaattgttcttgtctcgtttggatgttggggataatattcgtgcttcagctgttt |
263 |
Q |
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| T |
42479040 |
aatttggagctgcaaacatgggccgatctccctgctgaagtcttggaattgttcttgtctcgtttggatattggggataatattcgtgcttcagctgttt |
42479139 |
T |
|
| Q |
264 |
gcaagagatggtgttcagttgccacttctgtacgtgtactcgaccaatcaccttggcttatgtatttcccaaaaattggtaattgttatgatttttatga |
363 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
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| T |
42479140 |
gcaagagatggtgttcagttgccacttctgtacgtgtactcgaccaatcaccttggcttatgtatttcccaaaaaagggtaattgttatgatttctatga |
42479239 |
T |
|
| Q |
364 |
ccctatgcagcgtaaga-ctattcccttgagttgccagagttggatggatgtcgtgtttgctatgcaaaagatggttggttattgctaaaccggcatgac |
462 |
Q |
| |
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|||| | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |
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| T |
42479240 |
ccctgttcagcgtaagacctattcccttgagttgccagagttggatggatgtcgtgtttgctatacaaaagatggttggttattgctaaaccggcaggac |
42479339 |
T |
|
| Q |
463 |
tggcggagtttggacagagattgcattttttctctctttaatccctttactagggatctgatcacgctgccaagctttaaaaggacataccgaaatgctg |
562 |
Q |
| |
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|||||||| |||||| || || |||||| ||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||| | || ||||| |
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| T |
42479340 |
tggcggaggttggacggaaatcacattttctctctctttaatccctttactagggatctgatcacgctgccaaaatttgacaggacatatcaaattgctg |
42479439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 97 - 149
Target Start/End: Complemental strand, 44530274 - 44530222
Alignment:
| Q |
97 |
tctaatacttattttattaagtagaatcaaagacaatagaagagctgctgctg |
149 |
Q |
| |
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||||||||||||||| |||||||||||||||| ||||||||||||| |||||| |
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|
| T |
44530274 |
tctaatacttatttttttaagtagaatcaaaggcaatagaagagctactgctg |
44530222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 164 - 457
Target Start/End: Complemental strand, 26047439 - 26047145
Alignment:
| Q |
164 |
aatttggagctgcaaacatgggccgatctccctgctgaagtcttggaattgttcttgtctcgtttggatgttggggataatattcgtgcttcagctgttt |
263 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||| | || ||| || || | |||||||| | | | ||||||| | |||||||| ||||||| |
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| T |
26047439 |
aatttggagctgcaaacatgggctgatctccctgctgaactattagaaatgatcatatctcgtttagccttagaggataatgtccgtgcttctgctgttt |
26047340 |
T |
|
| Q |
264 |
gcaagagatggtgttcagttgccacttctgtacgtgtactcgaccaatcaccttggcttatgtatttcccaaaaattggtaattgttatgatttttatga |
363 |
Q |
| |
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||||||| ||| || ||||||| | ||||||| | | |||||||||| ||| | |||||||| || ||| ||||| | || ||||| || ||||| |
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| T |
26047339 |
gcaagagttggaattttgttgccaatgctgtacgcatggtgaaccaatcaccatggttgatgtattttccgaaatttggtcagtggtatgaattctatga |
26047240 |
T |
|
| Q |
364 |
ccctatgcagcgtaagac-tattcccttgagttgccagagttggatggatgtcgtgtttgctatgcaaaagatggttggttattgctaaaccggc |
457 |
Q |
| |
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|||| | ||||| ||||| |||||| ||||||| ||||||||| |||||| | | ||||| || ||||||||||||||||| ||||| |||||| |
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| T |
26047239 |
ccctgttcagcggaagacctattccattgagtttccagagttgaatggatctagagtttgttacacaaaagatggttggttactgctataccggc |
26047145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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