View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17152_low_102 (Length: 219)
Name: NF17152_low_102
Description: NF17152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17152_low_102 |
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Alignment Details
Target: chr5 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 15 - 200
Target Start/End: Original strand, 42114682 - 42114867
Alignment:
| Q |
15 |
catagggggacagtaatgaaaatcggttcagcagtctaaacattattaaaagtcgacgactaatttggcacgaaaaataaacaaaggacttaattgaaaa |
114 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
42114682 |
cataaggggacagtaatgaaaatcggttcagcagtctaaacattattaaaagtcgacgactaatttggcacgacaaataaacaaaggacttaattgaaaa |
42114781 |
T |
|
| Q |
115 |
gttaaaaggacactgatgcagttttgtcttataaacatattaaagcaagagcatgaacctgttatacttgaggctggtgtttgcaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42114782 |
gttaaaaggacactgatgcagttttgtcttataaacatattaaagcaagagcatgaacctgttatacttgaggctggtgtttgcaa |
42114867 |
T |
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