View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17152_low_104 (Length: 216)
Name: NF17152_low_104
Description: NF17152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17152_low_104 |
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Alignment Details
Target: chr3 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 19 - 155
Target Start/End: Complemental strand, 6786524 - 6786388
Alignment:
| Q |
19 |
ggggcctatagagcaaaatcaccattaataagtagaaagtaacattaatttgaaaac--aattttacaaatattatgtgatggaggagtagttaacaaaa |
116 |
Q |
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| T |
6786524 |
ggggactatagagcaaaatcaccattaataagtagaaagtaacattaattttaaaacaaaattttacaaatatta--tgatggaggagtagttaacaaaa |
6786427 |
T |
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| Q |
117 |
gaaaaacagaaataaaattatttgcaggaatttgtgtac |
155 |
Q |
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| T |
6786426 |
gaaaaacagatataaaattatttgaaagaacttgtgtac |
6786388 |
T |
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Target: chr3; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 44 - 155
Target Start/End: Complemental strand, 6792574 - 6792464
Alignment:
| Q |
44 |
taataagtagaaagtaacattaatttgaaaacaa--ttttacaaatattatgtgatggaggagtagttaacaaaagaaaaacagaaataaaattatttgc |
141 |
Q |
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| T |
6792574 |
taataagtagaaattagcattaatctcaaaacagatttttacaaatgttatgtgatggag---tagttaacaaaagaaaaacagaattaaaattatttga |
6792478 |
T |
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| Q |
142 |
aggaatttgtgtac |
155 |
Q |
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| T |
6792477 |
aggaatttgtgtac |
6792464 |
T |
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