View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17152_low_106 (Length: 213)

Name: NF17152_low_106
Description: NF17152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17152_low_106
NF17152_low_106
[»] chr3 (15 HSPs)
chr3 (132-213)||(39935061-39935142)
chr3 (151-213)||(39389062-39389122)
chr3 (150-213)||(22304237-22304298)
chr3 (170-213)||(43346897-43346940)
chr3 (151-213)||(50612558-50612618)
chr3 (12-60)||(39935213-39935258)
chr3 (151-212)||(51886553-51886612)
chr3 (150-210)||(22304560-22304618)
chr3 (151-210)||(37726496-37726553)
chr3 (170-213)||(33803358-33803401)
chr3 (170-213)||(54017922-54017965)
chr3 (170-212)||(53577373-53577415)
chr3 (150-213)||(4823646-4823707)
chr3 (170-206)||(22304061-22304097)
chr3 (170-210)||(25755403-25755443)
[»] chr8 (16 HSPs)
chr8 (151-213)||(1014351-1014411)
chr8 (150-213)||(3669678-3669739)
chr8 (151-212)||(20870680-20870741)
chr8 (150-213)||(30441072-30441133)
chr8 (151-213)||(3670052-3670112)
chr8 (170-213)||(18372805-18372848)
chr8 (170-212)||(18371763-18371805)
chr8 (150-210)||(6731895-6731953)
chr8 (170-211)||(33113475-33113516)
chr8 (151-213)||(41416277-41416335)
chr8 (150-213)||(1013977-1014038)
chr8 (170-213)||(3038396-3038439)
chr8 (170-213)||(18372362-18372405)
chr8 (170-213)||(34835218-34835261)
chr8 (170-213)||(45122163-45122206)
chr8 (170-210)||(6651512-6651552)
[»] chr1 (16 HSPs)
chr1 (153-213)||(32594822-32594880)
chr1 (150-213)||(3537253-3537314)
chr1 (146-213)||(41759470-41759535)
chr1 (150-213)||(44290931-44290992)
chr1 (151-213)||(3550712-3550772)
chr1 (150-212)||(44290565-44290625)
chr1 (150-213)||(45494084-45494146)
chr1 (150-213)||(48588594-48588655)
chr1 (170-213)||(40082416-40082459)
chr1 (170-213)||(29798208-29798251)
chr1 (170-213)||(34364516-34364559)
chr1 (170-213)||(34364934-34364977)
chr1 (170-213)||(41184531-41184574)
chr1 (170-213)||(50469187-50469230)
chr1 (171-213)||(3537705-3537747)
chr1 (170-212)||(50052130-50052172)
[»] chr6 (13 HSPs)
chr6 (151-213)||(3409251-3409311)
chr6 (150-213)||(2378117-2378178)
chr6 (150-213)||(29518911-29518972)
chr6 (151-213)||(26544041-26544101)
chr6 (151-213)||(29518495-29518555)
chr6 (151-213)||(32741171-32741231)
chr6 (151-213)||(35210196-35210256)
chr6 (149-213)||(3415448-3415510)
chr6 (151-213)||(3058218-3058278)
chr6 (150-212)||(3409651-3409711)
chr6 (151-213)||(14748444-14748504)
chr6 (170-212)||(9062456-9062498)
chr6 (170-213)||(10911574-10911618)
[»] scaffold0702 (1 HSPs)
scaffold0702 (150-213)||(248-309)
[»] chr7 (8 HSPs)
chr7 (150-213)||(14681501-14681562)
chr7 (150-213)||(37533116-37533177)
chr7 (153-213)||(29157559-29157617)
chr7 (170-213)||(1085722-1085765)
chr7 (170-213)||(7554034-7554077)
chr7 (170-213)||(30245503-30245546)
chr7 (170-211)||(40094502-40094543)
chr7 (170-211)||(47129104-47129145)
[»] chr4 (15 HSPs)
chr4 (150-213)||(50630859-50630920)
chr4 (151-213)||(55933228-55933288)
chr4 (151-213)||(50788087-50788147)
chr4 (151-213)||(49880152-49880212)
chr4 (170-213)||(52884704-52884747)
chr4 (170-213)||(52884896-52884939)
chr4 (170-212)||(1731752-1731794)
chr4 (170-212)||(25483345-25483387)
chr4 (156-213)||(50002423-50002478)
chr4 (170-212)||(54017700-54017742)
chr4 (171-213)||(54343105-54343147)
chr4 (184-213)||(54936219-54936248)
chr4 (170-210)||(2741080-2741120)
chr4 (170-210)||(6975563-6975603)
chr4 (151-210)||(41370349-41370406)
[»] chr2 (14 HSPs)
chr2 (150-213)||(5543104-5543165)
chr2 (150-213)||(37106179-37106240)
chr2 (150-213)||(7598600-7598661)
chr2 (150-213)||(36178711-36178772)
chr2 (151-213)||(14745773-14745833)
chr2 (151-213)||(41283581-41283641)
chr2 (150-213)||(5542731-5542792)
chr2 (146-213)||(37105911-37105976)
chr2 (151-213)||(1769884-1769944)
chr2 (151-213)||(36178375-36178435)
chr2 (170-213)||(36785669-36785712)
chr2 (170-213)||(42514658-42514701)
chr2 (170-207)||(37632709-37632746)
chr2 (170-210)||(31468855-31468895)
[»] scaffold0171 (1 HSPs)
scaffold0171 (170-213)||(17562-17605)
[»] chr5 (17 HSPs)
chr5 (151-213)||(32487386-32487446)
chr5 (149-213)||(9498760-9498822)
chr5 (150-213)||(6500814-6500874)
chr5 (151-213)||(623810-623870)
chr5 (151-213)||(6500443-6500502)
chr5 (170-213)||(18603226-18603269)
chr5 (150-213)||(624187-624248)
chr5 (146-213)||(7768837-7768902)
chr5 (151-213)||(5723897-5723957)
chr5 (170-213)||(26074252-26074295)
chr5 (151-213)||(27502142-27502202)
chr5 (170-213)||(42405702-42405745)
chr5 (170-212)||(12662759-12662801)
chr5 (170-212)||(35914858-35914900)
chr5 (156-213)||(36492323-36492378)
chr5 (170-212)||(41170643-41170685)
chr5 (159-213)||(3295121-3295172)
[»] scaffold0734 (2 HSPs)
scaffold0734 (170-213)||(5405-5448)
scaffold0734 (170-213)||(5786-5829)


Alignment Details
Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 132 - 213
Target Start/End: Complemental strand, 39935142 - 39935061
Alignment:
Q  132 ggacgtggttatggatttgtgttggtttgcaagtgtgagagttatatgtcatacatcagataaaatagtaaaggttgaacac 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||    
T  39935142 ggacgtggttatggatttgtgttggtttgcaagtgtgagagttatatgtcctacatcggataaaagagtaaaggttgaacac 39935061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 151 - 213
Target Start/End: Original strand, 39389062 - 39389122
Alignment:
Q  151 tgttggtttgcaagtgtgagagttatatgtcatacatcagataaaatagtaaaggttgaacac 213  Q
    ||||||||||||||||||||  ||||||||| |||||| ||||||||||||||||||||||||    
T  39389062 tgttggtttgcaagtgtgag--ttatatgtcctacatcggataaaatagtaaaggttgaacac 39389122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 150 - 213
Target Start/End: Original strand, 22304237 - 22304298
Alignment:
Q  150 gtgttggtttgcaagtgtgagagttatatgtcatacatcagataaaatagtaaaggttgaacac 213  Q
    |||||||||||||||||||||  |||||||||  ||||| ||||||||||||||||||||||||    
T  22304237 gtgttggtttgcaagtgtgag--ttatatgtcccacatcggataaaatagtaaaggttgaacac 22304298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 170 - 213
Target Start/End: Complemental strand, 43346940 - 43346897
Alignment:
Q  170 gagttatatgtcatacatcagataaaatagtaaaggttgaacac 213  Q
    ||||||||||||  ||||||||||||||||||||||||||||||    
T  43346940 gagttatatgtcccacatcagataaaatagtaaaggttgaacac 43346897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 151 - 213
Target Start/End: Complemental strand, 50612618 - 50612558
Alignment:
Q  151 tgttggtttgcaagtgtgagagttatatgtcatacatcagataaaatagtaaaggttgaacac 213  Q
    ||||||||||||||||||||  |||||||||  ||||| ||||||||||||||| ||||||||    
T  50612618 tgttggtttgcaagtgtgag--ttatatgtcccacatcggataaaatagtaaagattgaacac 50612558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 39935258 - 39935213
Alignment:
Q  12 agattattctcgcaactttattaatgagagaggggaagatatgattcag 60  Q
    ||||||||||||||||||||   ||||||||||||||||||||||||||    
T  39935258 agattattctcgcaacttta---atgagagaggggaagatatgattcag 39935213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 151 - 212
Target Start/End: Original strand, 51886553 - 51886612
Alignment:
Q  151 tgttggtttgcaagtgtgagagttatatgtcatacatcagataaaatagtaaaggttgaaca 212  Q
    ||||||||||||||||||||  |||||||||  |||||  ||||||||||||||||||||||    
T  51886553 tgttggtttgcaagtgtgag--ttatatgtctcacatcgaataaaatagtaaaggttgaaca 51886612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 150 - 210
Target Start/End: Original strand, 22304560 - 22304618
Alignment:
Q  150 gtgttggtttgcaagtgtgagagttatatgtcatacatcagataaaatagtaaaggttgaa 210  Q
    |||||||||||||||||||||   ||||||||  ||||| |||||||||||||||||||||    
T  22304560 gtgttggtttgcaagtgtgagc--tatatgtcccacatcggataaaatagtaaaggttgaa 22304618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 210
Target Start/End: Original strand, 37726496 - 37726553
Alignment:
Q  151 tgttggtttgcaagtgtgagagttatatgtcatacatcagataaaatagtaaaggttgaa 210  Q
    ||||||||||||||||||||  |||||||||  ||||| |||||||||||||| ||||||    
T  37726496 tgttggtttgcaagtgtgag--ttatatgtctcacatcggataaaatagtaaatgttgaa 37726553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 213
Target Start/End: Complemental strand, 33803401 - 33803358
Alignment:
Q  170 gagttatatgtcatacatcagataaaatagtaaaggttgaacac 213  Q
    ||||||||||||  ||||| ||||||||||||||||||||||||    
T  33803401 gagttatatgtcccacatcggataaaatagtaaaggttgaacac 33803358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 213
Target Start/End: Complemental strand, 54017965 - 54017922
Alignment:
Q  170 gagttatatgtcatacatcagataaaatagtaaaggttgaacac 213  Q
    |||||||||||| |||||| ||||||| ||||||||||||||||    
T  54017965 gagttatatgtcctacatcggataaaagagtaaaggttgaacac 54017922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 212
Target Start/End: Original strand, 53577373 - 53577415
Alignment:
Q  170 gagttatatgtcatacatcagataaaatagtaaaggttgaaca 212  Q
    ||||||||||||| ||||| ||||||| |||||||||||||||    
T  53577373 gagttatatgtcacacatcggataaaacagtaaaggttgaaca 53577415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 213
Target Start/End: Original strand, 4823646 - 4823707
Alignment:
Q  150 gtgttggtttgcaagtgtgagagttatatgtcatacatcagataaaatagtaaaggttgaacac 213  Q
    ||||||||||||||||||  |||||||| |||  ||||| |||||||||||||| ||| |||||    
T  4823646 gtgttggtttgcaagtgt--gagttataagtctcacatcggataaaatagtaaaagttaaacac 4823707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 206
Target Start/End: Complemental strand, 22304097 - 22304061
Alignment:
Q  170 gagttatatgtcatacatcagataaaatagtaaaggt 206  Q
    ||||||||||||  |||||||||||||||||||||||    
T  22304097 gagttatatgtcccacatcagataaaatagtaaaggt 22304061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 210
Target Start/End: Original strand, 25755403 - 25755443
Alignment:
Q  170 gagttatatgtcatacatcagataaaatagtaaaggttgaa 210  Q
    ||||||||||||  ||||||||||||| |||||||||||||    
T  25755403 gagttatatgtctcacatcagataaaagagtaaaggttgaa 25755443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 5e-21; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 151 - 213
Target Start/End: Complemental strand, 1014411 - 1014351
Alignment:
Q  151 tgttggtttgcaagtgtgagagttatatgtcatacatcagataaaatagtaaaggttgaacac 213  Q
    ||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  1014411 tgttggtttgcaagtgtgag--ttatatgtcatacatcagataaaatagtaaaggttgaacac 1014351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 150 - 213
Target Start/End: Original strand, 3669678 - 3669739
Alignment:
Q  150 gtgttggtttgcaagtgtgagagttatatgtcatacatcagataaaatagtaaaggttgaacac 213  Q
    |||||||||||||||||||||  |||||||||  ||||||||||||||||||||||||||||||    
T  3669678 gtgttggtttgcaagtgtgag--ttatatgtcccacatcagataaaatagtaaaggttgaacac 3669739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 151 - 212
Target Start/End: Complemental strand, 20870741 - 20870680
Alignment:
Q  151 tgttggtttgcaagtgtgagagttatatgtcatacatcagataaaatagtaaaggttgaaca 212  Q
    ||||||||||||||||||||   |||||||   |||||||||||||||||||||||||||||    
T  20870741 tgttggtttgcaagtgtgagttatatatgttccacatcagataaaatagtaaaggttgaaca 20870680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 150 - 213
Target Start/End: Original strand, 30441072 - 30441133
Alignment:
Q  150 gtgttggtttgcaagtgtgagagttatatgtcatacatcagataaaatagtaaaggttgaacac 213  Q
    |||||||||||||||||||||  |||||||||  ||||| | ||||||||||||||||||||||    
T  30441072 gtgttggtttgcaagtgtgag--ttatatgtcccacatcggctaaaatagtaaaggttgaacac 30441133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 151 - 213
Target Start/End: Original strand, 3670052 - 3670112
Alignment:
Q  151 tgttggtttgcaagtgtgagagttatatgtcatacatcagataaaatagtaaaggttgaacac 213  Q
    ||||||||||||||||||||  |||||||||  ||||| |||||||||||||||||| |||||    
T  3670052 tgttggtttgcaagtgtgag--ttatatgtcccacatcggataaaatagtaaaggtttaacac 3670112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 170 - 213
Target Start/End: Complemental strand, 18372848 - 18372805
Alignment:
Q  170 gagttatatgtcatacatcagataaaatagtaaaggttgaacac 213  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||    
T  18372848 gagttatatgtcacacatcggataaaatagtaaaggttgaacac 18372805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 170 - 212
Target Start/End: Complemental strand, 18371805 - 18371763
Alignment:
Q  170 gagttatatgtcatacatcagataaaatagtaaaggttgaaca 212  Q
    ||||||||||||| ||||| |||||||||||||||||||||||    
T  18371805 gagttatatgtcacacatcggataaaatagtaaaggttgaaca 18371763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 150 - 210
Target Start/End: Original strand, 6731895 - 6731953
Alignment:
Q  150 gtgttggtttgcaagtgtgagagttatatgtcatacatcagataaaatagtaaaggttgaa 210  Q
    |||||| ||||||||||||||  |||||||||  ||||| |||||||||||||||||||||    
T  6731895 gtgttgttttgcaagtgtgag--ttatatgtcccacatcggataaaatagtaaaggttgaa 6731953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 170 - 211
Target Start/End: Complemental strand, 33113516 - 33113475
Alignment:
Q  170 gagttatatgtcatacatcagataaaatagtaaaggttgaac 211  Q
    |||||||||||| |||||| ||||||||||||||||||||||    
T  33113516 gagttatatgtcctacatcggataaaatagtaaaggttgaac 33113475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 213
Target Start/End: Complemental strand, 41416335 - 41416277
Alignment:
Q  151 tgttggtttgcaagtgtgagagttatatgtcatacatcagataaaatagtaaaggttgaacac 213  Q
    ||||||||||||||||    |||||||||||  ||||| ||||||||||||||||||||||||    
T  41416335 tgttggtttgcaagtg----agttatatgtcccacatcggataaaatagtaaaggttgaacac 41416277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 213
Target Start/End: Complemental strand, 1014038 - 1013977
Alignment:
Q  150 gtgttggtttgcaagtgtgagagttatatgtcatacatcagataaaatagtaaaggttgaacac 213  Q
    |||||||||||||||||||||  ||||||||   ||||| |||||||||||||| |||||||||    
T  1014038 gtgttggtttgcaagtgtgag--ttatatgttccacatcggataaaatagtaaaagttgaacac 1013977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 213
Target Start/End: Complemental strand, 3038439 - 3038396
Alignment:
Q  170 gagttatatgtcatacatcagataaaatagtaaaggttgaacac 213  Q
    ||||||||||||  ||||| ||||||||||||||||||||||||    
T  3038439 gagttatatgtcccacatcggataaaatagtaaaggttgaacac 3038396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 213
Target Start/End: Complemental strand, 18372405 - 18372362
Alignment:
Q  170 gagttatatgtcatacatcagataaaatagtaaaggttgaacac 213  Q
    ||||||||||||  ||||| ||||||||||||||||||||||||    
T  18372405 gagttatatgtctcacatcggataaaatagtaaaggttgaacac 18372362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 213
Target Start/End: Original strand, 34835218 - 34835261
Alignment:
Q  170 gagttatatgtcatacatcagataaaatagtaaaggttgaacac 213  Q
    ||||||||||||  ||||| ||||||||||||||||||||||||    
T  34835218 gagttatatgtcccacatccgataaaatagtaaaggttgaacac 34835261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 213
Target Start/End: Complemental strand, 45122206 - 45122163
Alignment:
Q  170 gagttatatgtcatacatcagataaaatagtaaaggttgaacac 213  Q
    ||||||||||||  ||||| ||||||||||||||||||||||||    
T  45122206 gagttatatgtctcacatcggataaaatagtaaaggttgaacac 45122163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 210
Target Start/End: Original strand, 6651512 - 6651552
Alignment:
Q  170 gagttatatgtcatacatcagataaaatagtaaaggttgaa 210  Q
    ||||||||||||  ||||| |||||||||||||||||||||    
T  6651512 gagttatatgtctcacatcggataaaatagtaaaggttgaa 6651552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 153 - 213
Target Start/End: Complemental strand, 32594880 - 32594822
Alignment:
Q  153 ttggtttgcaagtgtgagagttatatgtcatacatcagataaaatagtaaaggttgaacac 213  Q
    ||||||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||    
T  32594880 ttggtttgcaagtgtgag--ttatatgtcctacatcagataaaatagtaaaggttgaacac 32594822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 150 - 213
Target Start/End: Complemental strand, 3537314 - 3537253
Alignment:
Q  150 gtgttggtttgcaagtgtgagagttatatgtcatacatcagataaaatagtaaaggttgaacac 213  Q
    |||||||||||||||||||||  |||||||||  ||||| ||||||||||||||||||||||||    
T  3537314 gtgttggtttgcaagtgtgag--ttatatgtcccacatcggataaaatagtaaaggttgaacac 3537253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 146 - 213
Target Start/End: Original strand, 41759470 - 41759535
Alignment:
Q  146 atttgtgttggtttgcaagtgtgagagttatatgtcatacatcagataaaatagtaaaggttgaacac 213  Q
    |||| ||||||||||||||||||||  |||||||||| ||||| |||||||||||||| |||||||||    
T  41759470 atttttgttggtttgcaagtgtgag--ttatatgtcacacatcggataaaatagtaaaagttgaacac 41759535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 150 - 213
Target Start/End: Complemental strand, 44290992 - 44290931
Alignment:
Q  150 gtgttggtttgcaagtgtgagagttatatgtcatacatcagataaaatagtaaaggttgaacac 213  Q
    |||||||||||||||||||||  |||||||||  ||||| ||||||||||||||||||||||||    
T  44290992 gtgttggtttgcaagtgtgag--ttatatgtcccacatcggataaaatagtaaaggttgaacac 44290931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 151 - 213
Target Start/End: Original strand, 3550712 - 3550772
Alignment:
Q  151 tgttggtttgcaagtgtgagagttatatgtcatacatcagataaaatagtaaaggttgaacac 213  Q
    |||||||| |||||||||||  |||||||||  ||||||||||||||||||||||||||||||    
T  3550712 tgttggttggcaagtgtgag--ttatatgtcccacatcagataaaatagtaaaggttgaacac 3550772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 150 - 212
Target Start/End: Complemental strand, 44290625 - 44290565
Alignment:
Q  150 gtgttggtttgcaagtgtgagagttatatgtcatacatcagataaaatagtaaaggttgaaca 212  Q
    |||||||||||||||||||||  |||||||||  ||||| |||||||||||||||||||||||    
T  44290625 gtgttggtttgcaagtgtgag--ttatatgtcccacatcggataaaatagtaaaggttgaaca 44290565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 150 - 213
Target Start/End: Complemental strand, 45494146 - 45494084
Alignment:
Q  150 gtgttggtttgcaagtgtgagagttatatgtcatacatcagataaaatagtaaaggttgaacac 213  Q
    |||||||||||||||||||||  |||||||||  ||||| ||||||||||||||||||||||||    
T  45494146 gtgttggtttgcaagtgtgagt-ttatatgtcccacatcggataaaatagtaaaggttgaacac 45494084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 150 - 213
Target Start/End: Complemental strand, 48588655 - 48588594
Alignment:
Q  150 gtgttggtttgcaagtgtgagagttatatgtcatacatcagataaaatagtaaaggttgaacac 213  Q
    |||||||||||||||||||||  || ||||||  ||||| ||||||||||||||||||||||||    
T  48588655 gtgttggtttgcaagtgtgag--ttctatgtccgacatcggataaaatagtaaaggttgaacac 48588594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 170 - 213
Target Start/End: Original strand, 40082416 - 40082459
Alignment:
Q  170 gagttatatgtcatacatcagataaaatagtaaaggttgaacac 213  Q
    |||||||||||| |||||| ||||||||||||||||||||||||    
T  40082416 gagttatatgtcctacatcggataaaatagtaaaggttgaacac 40082459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 213
Target Start/End: Original strand, 29798208 - 29798251
Alignment:
Q  170 gagttatatgtcatacatcagataaaatagtaaaggttgaacac 213  Q
    |||||||||||| |||||  ||||||||||||||||||||||||    
T  29798208 gagttatatgtcctacattggataaaatagtaaaggttgaacac 29798251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 213
Target Start/End: Original strand, 34364516 - 34364559
Alignment:
Q  170 gagttatatgtcatacatcagataaaatagtaaaggttgaacac 213  Q
    ||||||||||||  ||||| ||||||||||||||||||||||||    
T  34364516 gagttatatgtctcacatcggataaaatagtaaaggttgaacac 34364559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 213
Target Start/End: Original strand, 34364934 - 34364977
Alignment:
Q  170 gagttatatgtcatacatcagataaaatagtaaaggttgaacac 213  Q
    ||||||||||||| ||||| ||||||||| ||||||||||||||    
T  34364934 gagttatatgtcacacatcggataaaataataaaggttgaacac 34364977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 213
Target Start/End: Complemental strand, 41184574 - 41184531
Alignment:
Q  170 gagttatatgtcatacatcagataaaatagtaaaggttgaacac 213  Q
    ||||||||||||  ||||| ||||||||||||||||||||||||    
T  41184574 gagttatatgtctcacatcggataaaatagtaaaggttgaacac 41184531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 213
Target Start/End: Complemental strand, 50469230 - 50469187
Alignment:
Q  170 gagttatatgtcatacatcagataaaatagtaaaggttgaacac 213  Q
    |||||||||||| |||||||||||| | ||||||||||||||||    
T  50469230 gagttatatgtcctacatcagataataaagtaaaggttgaacac 50469187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 213
Target Start/End: Complemental strand, 3537747 - 3537705
Alignment:
Q  171 agttatatgtcatacatcagataaaatagtaaaggttgaacac 213  Q
    |||||||||||  ||||| ||||||||||||||||||||||||    
T  3537747 agttatatgtcccacatcggataaaatagtaaaggttgaacac 3537705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 212
Target Start/End: Complemental strand, 50052172 - 50052130
Alignment:
Q  170 gagttatatgtcatacatcagataaaatagtaaaggttgaaca 212  Q
    ||||||||||||  ||||| |||||||||||||||||||||||    
T  50052172 gagttatatgtcccacatcggataaaatagtaaaggttgaaca 50052130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 3e-16; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 151 - 213
Target Start/End: Original strand, 3409251 - 3409311
Alignment:
Q  151 tgttggtttgcaagtgtgagagttatatgtcatacatcagataaaatagtaaaggttgaacac 213  Q
    ||||||||||||||||||||  |||||||||  ||||||||||||||||||||||||||||||    
T  3409251 tgttggtttgcaagtgtgag--ttatatgtcccacatcagataaaatagtaaaggttgaacac 3409311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 150 - 213
Target Start/End: Original strand, 2378117 - 2378178
Alignment:
Q  150 gtgttggtttgcaagtgtgagagttatatgtcatacatcagataaaatagtaaaggttgaacac 213  Q
    |||||||||||||||||||||  |||||||||  ||||| ||||||||||||||||||||||||    
T  2378117 gtgttggtttgcaagtgtgag--ttatatgtcccacatcggataaaatagtaaaggttgaacac 2378178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 150 - 213
Target Start/End: Original strand, 29518911 - 29518972
Alignment:
Q  150 gtgttggtttgcaagtgtgagagttatatgtcatacatcagataaaatagtaaaggttgaacac 213  Q
    |||||||||||||||||||||  |||||||||  ||||| ||||||||||||||||||||||||    
T  29518911 gtgttggtttgcaagtgtgag--ttatatgtcccacatcggataaaatagtaaaggttgaacac 29518972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 151 - 213
Target Start/End: Original strand, 26544041 - 26544101
Alignment:
Q  151 tgttggtttgcaagtgtgagagttatatgtcatacatcagataaaatagtaaaggttgaacac 213  Q
    ||||||||||||||||||||  |||||||||  ||||| ||||||||||||||||||||||||    
T  26544041 tgttggtttgcaagtgtgag--ttatatgtcccacatcggataaaatagtaaaggttgaacac 26544101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 151 - 213
Target Start/End: Original strand, 29518495 - 29518555
Alignment:
Q  151 tgttggtttgcaagtgtgagagttatatgtcatacatcagataaaatagtaaaggttgaacac 213  Q
    ||||||||||||||||||||  |||||||||  ||||| ||||||||||||||||||||||||    
T  29518495 tgttggtttgcaagtgtgag--ttatatgtcccacatcggataaaatagtaaaggttgaacac 29518555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 151 - 213
Target Start/End: Original strand, 32741171 - 32741231
Alignment:
Q  151 tgttggtttgcaagtgtgagagttatatgtcatacatcagataaaatagtaaaggttgaacac 213  Q
    ||||||||||||||||||||  |||||||||  ||||| ||||||||||||||||||||||||    
T  32741171 tgttggtttgcaagtgtgag--ttatatgtcccacatcggataaaatagtaaaggttgaacac 32741231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 151 - 213
Target Start/End: Original strand, 35210196 - 35210256
Alignment:
Q  151 tgttggtttgcaagtgtgagagttatatgtcatacatcagataaaatagtaaaggttgaacac 213  Q
    ||||||||||||||||||||  |||||||||  ||||| ||||||||||||||||||||||||    
T  35210196 tgttggtttgcaagtgtgag--ttatatgtctcacatcggataaaatagtaaaggttgaacac 35210256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 149 - 213
Target Start/End: Original strand, 3415448 - 3415510
Alignment:
Q  149 tgtgttggtttgcaagtgtgagagttatatgtcatacatcagataaaatagtaaaggttgaacac 213  Q
    ||||||||||||| ||||||||  |||||||||  |||||| |||||||||||||||||||||||    
T  3415448 tgtgttggtttgcgagtgtgag--ttatatgtcccacatcacataaaatagtaaaggttgaacac 3415510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 151 - 213
Target Start/End: Original strand, 3058218 - 3058278
Alignment:
Q  151 tgttggtttgcaagtgtgagagttatatgtcatacatcagataaaatagtaaaggttgaacac 213  Q
    ||||||||||||||||| ||  |||||||||  ||||| ||||||||||||||||||||||||    
T  3058218 tgttggtttgcaagtgttag--ttatatgtcccacatcggataaaatagtaaaggttgaacac 3058278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 150 - 212
Target Start/End: Original strand, 3409651 - 3409711
Alignment:
Q  150 gtgttggtttgcaagtgtgagagttatatgtcatacatcagataaaatagtaaaggttgaaca 212  Q
    |||||||||||||||||||||  ||||||||   |||||||||||||||||||| ||||||||    
T  3409651 gtgttggtttgcaagtgtgag--ttatatgtaccacatcagataaaatagtaaaagttgaaca 3409711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 151 - 213
Target Start/End: Complemental strand, 14748504 - 14748444
Alignment:
Q  151 tgttggtttgcaagtgtgagagttatatgtcatacatcagataaaatagtaaaggttgaacac 213  Q
    ||||| ||||||||||||||  |||||||||  ||||| ||||||||||||||||||||||||    
T  14748504 tgttgatttgcaagtgtgag--ttatatgtcccacatcggataaaatagtaaaggttgaacac 14748444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 212
Target Start/End: Complemental strand, 9062498 - 9062456
Alignment:
Q  170 gagttatatgtcatacatcagataaaatagtaaaggttgaaca 212  Q
    ||||||||||||  ||||| |||||||||||||||||||||||    
T  9062498 gagttatatgtcccacatcggataaaatagtaaaggttgaaca 9062456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 213
Target Start/End: Original strand, 10911574 - 10911618
Alignment:
Q  170 gagttatatgtcatacatcagat-aaaatagtaaaggttgaacac 213  Q
    |||||||||||| |||||||||| |||| ||||||||||||||||    
T  10911574 gagttatatgtcctacatcagataaaaaaagtaaaggttgaacac 10911618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0702 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0702
Description:

Target: scaffold0702; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 150 - 213
Target Start/End: Complemental strand, 309 - 248
Alignment:
Q  150 gtgttggtttgcaagtgtgagagttatatgtcatacatcagataaaatagtaaaggttgaacac 213  Q
    |||||||||||||||||||||  |||||||||  ||||| ||||||||||||||||||||||||    
T  309 gtgttggtttgcaagtgtgag--ttatatgtcccacatcggataaaatagtaaaggttgaacac 248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 150 - 213
Target Start/End: Original strand, 14681501 - 14681562
Alignment:
Q  150 gtgttggtttgcaagtgtgagagttatatgtcatacatcagataaaatagtaaaggttgaacac 213  Q
    |||||||||||||||||| ||  |||||||||  ||||||||||||||||||||||||||||||    
T  14681501 gtgttggtttgcaagtgtaag--ttatatgtcccacatcagataaaatagtaaaggttgaacac 14681562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 150 - 213
Target Start/End: Complemental strand, 37533177 - 37533116
Alignment:
Q  150 gtgttggtttgcaagtgtgagagttatatgtcatacatcagataaaatagtaaaggttgaacac 213  Q
    |||||||||||||||||||||  |||||||||  ||||  ||||||||||||||||||||||||    
T  37533177 gtgttggtttgcaagtgtgag--ttatatgtcccacattggataaaatagtaaaggttgaacac 37533116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 153 - 213
Target Start/End: Original strand, 29157559 - 29157617
Alignment:
Q  153 ttggtttgcaagtgtgagagttatatgtcatacatcagataaaatagtaaaggttgaacac 213  Q
    ||||||||||||||||||  |||||||||  ||| | ||||||||||||||||||||||||    
T  29157559 ttggtttgcaagtgtgag--ttatatgtcccacaccggataaaatagtaaaggttgaacac 29157617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 213
Target Start/End: Complemental strand, 1085765 - 1085722
Alignment:
Q  170 gagttatatgtcatacatcagataaaatagtaaaggttgaacac 213  Q
    ||||||||||||  ||||| ||||||||||||||||||||||||    
T  1085765 gagttatatgtcccacatcggataaaatagtaaaggttgaacac 1085722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 213
Target Start/End: Original strand, 7554034 - 7554077
Alignment:
Q  170 gagttatatgtcatacatcagataaaatagtaaaggttgaacac 213  Q
    ||||||||||||  ||||| ||||||||||||||||||||||||    
T  7554034 gagttatatgtcccacatcggataaaatagtaaaggttgaacac 7554077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 213
Target Start/End: Original strand, 30245503 - 30245546
Alignment:
Q  170 gagttatatgtcatacatcagataaaatagtaaaggttgaacac 213  Q
    ||||||||||||  ||||||||||||| ||||||||||||||||    
T  30245503 gagttatatgtcccacatcagataaaagagtaaaggttgaacac 30245546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 170 - 211
Target Start/End: Complemental strand, 40094543 - 40094502
Alignment:
Q  170 gagttatatgtcatacatcagataaaatagtaaaggttgaac 211  Q
    ||||||||||||  ||||||||||||| ||||||||||||||    
T  40094543 gagttatatgtccaacatcagataaaagagtaaaggttgaac 40094502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 170 - 211
Target Start/End: Original strand, 47129104 - 47129145
Alignment:
Q  170 gagttatatgtcatacatcagataaaatagtaaaggttgaac 211  Q
    ||||||||||||  ||||| ||||||||||||||||||||||    
T  47129104 gagttatatgtctcacatcggataaaatagtaaaggttgaac 47129145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 150 - 213
Target Start/End: Complemental strand, 50630920 - 50630859
Alignment:
Q  150 gtgttggtttgcaagtgtgagagttatatgtcatacatcagataaaatagtaaaggttgaacac 213  Q
    ||||||||||||||| |||||  ||||||||| |||||| ||||||||||||||||||||||||    
T  50630920 gtgttggtttgcaagcgtgag--ttatatgtcctacatcggataaaatagtaaaggttgaacac 50630859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 151 - 213
Target Start/End: Complemental strand, 55933288 - 55933228
Alignment:
Q  151 tgttggtttgcaagtgtgagagttatatgtcatacatcagataaaatagtaaaggttgaacac 213  Q
    ||||||||||||||||||||  ||||||||| |||||| ||||||||||||| ||||||||||    
T  55933288 tgttggtttgcaagtgtgag--ttatatgtcctacatcggataaaatagtaagggttgaacac 55933228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 151 - 213
Target Start/End: Complemental strand, 50788147 - 50788087
Alignment:
Q  151 tgttggtttgcaagtgtgagagttatatgtcatacatcagataaaatagtaaaggttgaacac 213  Q
    ||||||||||||||||| ||  |||||||||  ||||| ||||||||||||||||||||||||    
T  50788147 tgttggtttgcaagtgtaag--ttatatgtcccacatcggataaaatagtaaaggttgaacac 50788087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 213
Target Start/End: Original strand, 49880152 - 49880212
Alignment:
Q  151 tgttggtttgcaagtgtgagagttatatgtcatacatcagataaaatagtaaaggttgaacac 213  Q
    ||||||||||||||||||||  |||||||||  ||||   |||||||||||||||||||||||    
T  49880152 tgttggtttgcaagtgtgag--ttatatgtcccacattgaataaaatagtaaaggttgaacac 49880212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 213
Target Start/End: Original strand, 52884704 - 52884747
Alignment:
Q  170 gagttatatgtcatacatcagataaaatagtaaaggttgaacac 213  Q
    ||||||||||||  ||||| ||||||||||||||||||||||||    
T  52884704 gagttatatgtcccacatcggataaaatagtaaaggttgaacac 52884747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 213
Target Start/End: Original strand, 52884896 - 52884939
Alignment:
Q  170 gagttatatgtcatacatcagataaaatagtaaaggttgaacac 213  Q
    ||||||||||||  ||||| ||||||||||||||||||||||||    
T  52884896 gagttatatgtcccacatcggataaaatagtaaaggttgaacac 52884939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 212
Target Start/End: Complemental strand, 1731794 - 1731752
Alignment:
Q  170 gagttatatgtcatacatcagataaaatagtaaaggttgaaca 212  Q
    ||||||||||||  ||||||||||||| |||||||||||||||    
T  1731794 gagttatatgtcccacatcagataaaacagtaaaggttgaaca 1731752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 212
Target Start/End: Original strand, 25483345 - 25483387
Alignment:
Q  170 gagttatatgtcatacatcagataaaatagtaaaggttgaaca 212  Q
    ||||||||||||  ||||| |||||||||||||||||||||||    
T  25483345 gagttatatgtctcacatcggataaaatagtaaaggttgaaca 25483387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 213
Target Start/End: Original strand, 50002423 - 50002478
Alignment:
Q  156 gtttgcaagtgtgagagttatatgtcatacatcagataaaatagtaaaggttgaacac 213  Q
    |||||||||||||||  |||||||||  ||||| ||||||| ||||||||||||||||    
T  50002423 gtttgcaagtgtgag--ttatatgtctcacatcggataaaagagtaaaggttgaacac 50002478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 212
Target Start/End: Complemental strand, 54017742 - 54017700
Alignment:
Q  170 gagttatatgtcatacatcagataaaatagtaaaggttgaaca 212  Q
    ||||||||||||  || ||||||||||||||||||||||||||    
T  54017742 gagttatatgtcccacgtcagataaaatagtaaaggttgaaca 54017700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 213
Target Start/End: Complemental strand, 54343147 - 54343105
Alignment:
Q  171 agttatatgtcatacatcagataaaatagtaaaggttgaacac 213  Q
    |||||||||||  ||||| ||||||||||||||||||||||||    
T  54343147 agttatatgtcccacatcggataaaatagtaaaggttgaacac 54343105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 184 - 213
Target Start/End: Original strand, 54936219 - 54936248
Alignment:
Q  184 acatcagataaaatagtaaaggttgaacac 213  Q
    ||||||||||||||||||||||||||||||    
T  54936219 acatcagataaaatagtaaaggttgaacac 54936248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 210
Target Start/End: Original strand, 2741080 - 2741120
Alignment:
Q  170 gagttatatgtcatacatcagataaaatagtaaaggttgaa 210  Q
    ||||||||||||  |||||||||| ||||||||||||||||    
T  2741080 gagttatatgtcccacatcagatagaatagtaaaggttgaa 2741120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 210
Target Start/End: Complemental strand, 6975603 - 6975563
Alignment:
Q  170 gagttatatgtcatacatcagataaaatagtaaaggttgaa 210  Q
    ||||||||||||  ||||| |||||||||||||||||||||    
T  6975603 gagttatatgtctcacatccgataaaatagtaaaggttgaa 6975563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 210
Target Start/End: Original strand, 41370349 - 41370406
Alignment:
Q  151 tgttggtttgcaagtgtgagagttatatgtcatacatcagataaaatagtaaaggttgaa 210  Q
    ||||||||||||||||||||  |||||||||  | ||| |||||||||||||| ||||||    
T  41370349 tgttggtttgcaagtgtgag--ttatatgtcccaaatcggataaaatagtaaatgttgaa 41370406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 150 - 213
Target Start/End: Complemental strand, 5543165 - 5543104
Alignment:
Q  150 gtgttggtttgcaagtgtgagagttatatgtcatacatcagataaaatagtaaaggttgaacac 213  Q
    |||||||||||||||||||||  |||||||||  ||||| ||||||||||||||||||||||||    
T  5543165 gtgttggtttgcaagtgtgag--ttatatgtcccacatccgataaaatagtaaaggttgaacac 5543104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 150 - 213
Target Start/End: Original strand, 37106179 - 37106240
Alignment:
Q  150 gtgttggtttgcaagtgtgagagttatatgtcatacatcagataaaatagtaaaggttgaacac 213  Q
    |||||||||||||||||||||  |||||||||  ||||| ||||||||||||||||||||||||    
T  37106179 gtgttggtttgcaagtgtgag--ttatatgtcccacatcggataaaatagtaaaggttgaacac 37106240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 150 - 213
Target Start/End: Original strand, 7598600 - 7598661
Alignment:
Q  150 gtgttggtttgcaagtgtgagagttatatgtcatacatcagataaaatagtaaaggttgaacac 213  Q
    |||||||| ||||||||||||  |||||||||  ||||||||||||| ||||||||||||||||    
T  7598600 gtgttggtgtgcaagtgtgag--ttatatgtcccacatcagataaaaaagtaaaggttgaacac 7598661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 150 - 213
Target Start/End: Complemental strand, 36178772 - 36178711
Alignment:
Q  150 gtgttggtttgcaagtgtgagagttatatgtcatacatcagataaaatagtaaaggttgaacac 213  Q
    ||||| |||||||||||||||  |||||||||  ||||| ||||||||||||||||||||||||    
T  36178772 gtgttagtttgcaagtgtgag--ttatatgtcccacatcggataaaatagtaaaggttgaacac 36178711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 151 - 213
Target Start/End: Complemental strand, 14745833 - 14745773
Alignment:
Q  151 tgttggtttgcaagtgtgagagttatatgtcatacatcagataaaatagtaaaggttgaacac 213  Q
    ||||||||||||||||||||  |||||||||  ||||  ||||||||||||||||||||||||    
T  14745833 tgttggtttgcaagtgtgag--ttatatgtcccacattggataaaatagtaaaggttgaacac 14745773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 151 - 213
Target Start/End: Complemental strand, 41283641 - 41283581
Alignment:
Q  151 tgttggtttgcaagtgtgagagttatatgtcatacatcagataaaatagtaaaggttgaacac 213  Q
    ||||||||||||||||||||  |||||||||  | ||| ||||||||||||||||||||||||    
T  41283641 tgttggtttgcaagtgtgag--ttatatgtcccatatcggataaaatagtaaaggttgaacac 41283581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 213
Target Start/End: Complemental strand, 5542792 - 5542731
Alignment:
Q  150 gtgttggtttgcaagtgtgagagttatatgtcatacatcagataaaatagtaaaggttgaacac 213  Q
    |||||||||||||||||||||  |||||||||  | |||  |||||||||||||||||||||||    
T  5542792 gtgttggtttgcaagtgtgag--ttatatgtcccatatcgaataaaatagtaaaggttgaacac 5542731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 213
Target Start/End: Original strand, 37105911 - 37105976
Alignment:
Q  146 atttgtgttggtttgcaagtgtgagagttatatgtcatacatcagataaaatagtaaaggttgaacac 213  Q
    |||| ||| ||||||||||||||||  |||||||||  |||||  |||||||||||||||||||||||    
T  37105911 atttttgtgggtttgcaagtgtgag--ttatatgtcccacatcgaataaaatagtaaaggttgaacac 37105976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 213
Target Start/End: Original strand, 1769884 - 1769944
Alignment:
Q  151 tgttggtttgcaagtgtgagagttatatgtcatacatcagataaaatagtaaaggttgaacac 213  Q
    ||||||| ||||||||||||  |||||||||| ||||| ||||||| |||||| |||||||||    
T  1769884 tgttggtgtgcaagtgtgag--ttatatgtcacacatcggataaaagagtaaaagttgaacac 1769944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 213
Target Start/End: Complemental strand, 36178435 - 36178375
Alignment:
Q  151 tgttggtttgcaagtgtgagagttatatgtcatacatcagataaaatagtaaaggttgaacac 213  Q
    ||||||||||||||||||||  |||||||||  || || ||||||||||||||||| ||||||    
T  36178435 tgttggtttgcaagtgtgag--ttatatgtcccacttcggataaaatagtaaaggtggaacac 36178375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 213
Target Start/End: Complemental strand, 36785712 - 36785669
Alignment:
Q  170 gagttatatgtcatacatcagataaaatagtaaaggttgaacac 213  Q
    ||||||||||||  ||||| ||||||||||||||||||||||||    
T  36785712 gagttatatgtcccacatcggataaaatagtaaaggttgaacac 36785669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 213
Target Start/End: Original strand, 42514658 - 42514701
Alignment:
Q  170 gagttatatgtcatacatcagataaaatagtaaaggttgaacac 213  Q
    |||||||||||| ||||||||||| || ||||||||||||||||    
T  42514658 gagttatatgtcctacatcagatagaaaagtaaaggttgaacac 42514701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 170 - 207
Target Start/End: Complemental strand, 37632746 - 37632709
Alignment:
Q  170 gagttatatgtcatacatcagataaaatagtaaaggtt 207  Q
    |||||||||||| |||||| ||||||||||||||||||    
T  37632746 gagttatatgtcctacatcggataaaatagtaaaggtt 37632709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 210
Target Start/End: Complemental strand, 31468895 - 31468855
Alignment:
Q  170 gagttatatgtcatacatcagataaaatagtaaaggttgaa 210  Q
    ||||||||||||  ||||| |||||||||||||||||||||    
T  31468895 gagttatatgtcccacatcggataaaatagtaaaggttgaa 31468855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 170 - 213
Target Start/End: Complemental strand, 17605 - 17562
Alignment:
Q  170 gagttatatgtcatacatcagataaaatagtaaaggttgaacac 213  Q
    ||||||||||||| ||||||||||||||||||||||||||||||    
T  17605 gagttatatgtcacacatcagataaaatagtaaaggttgaacac 17562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 151 - 213
Target Start/End: Original strand, 32487386 - 32487446
Alignment:
Q  151 tgttggtttgcaagtgtgagagttatatgtcatacatcagataaaatagtaaaggttgaacac 213  Q
    ||||||||||||||||||||  |||||||||  ||||| ||||||||||||||||||||||||    
T  32487386 tgttggtttgcaagtgtgag--ttatatgtcccacatcggataaaatagtaaaggttgaacac 32487446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 149 - 213
Target Start/End: Complemental strand, 9498822 - 9498760
Alignment:
Q  149 tgtgttggtttgcaagtgtgagagttatatgtcatacatcagataaaatagtaaaggttgaacac 213  Q
    ||||||||||||||| ||||||  |||||||||  |||||||||| |||||||||||||||||||    
T  9498822 tgtgttggtttgcaaatgtgag--ttatatgtctcacatcagatagaatagtaaaggttgaacac 9498760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 150 - 213
Target Start/End: Original strand, 6500814 - 6500874
Alignment:
Q  150 gtgttggtttgcaagtgtgagagttatatgtcatacatcagataaaatagtaaaggttgaacac 213  Q
    |||||||||||||||||||||  |||||||||  ||||| ||||||||||||||||||||||||    
T  6500814 gtgttggtttgcaagtgtgag--ttatatgtcc-acatcggataaaatagtaaaggttgaacac 6500874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 151 - 213
Target Start/End: Original strand, 623810 - 623870
Alignment:
Q  151 tgttggtttgcaagtgtgagagttatatgtcatacatcagataaaatagtaaaggttgaacac 213  Q
    ||||||||||||||||||||  |||||||||  ||||| |||| |||||||||||||||||||    
T  623810 tgttggtttgcaagtgtgag--ttatatgtctcacatcggatataatagtaaaggttgaacac 623870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 151 - 213
Target Start/End: Original strand, 6500443 - 6500502
Alignment:
Q  151 tgttggtttgcaagtgtgagagttatatgtcatacatcagataaaatagtaaaggttgaacac 213  Q
    ||||||||||||||||||||  |||||||||  ||||| ||||||||||||||||||||||||    
T  6500443 tgttggtttgcaagtgtgag--ttatatgtcc-acatcggataaaatagtaaaggttgaacac 6500502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 170 - 213
Target Start/End: Complemental strand, 18603269 - 18603226
Alignment:
Q  170 gagttatatgtcatacatcagataaaatagtaaaggttgaacac 213  Q
    ||||||||||||  ||||||||||||||||||||||||||||||    
T  18603269 gagttatatgtcccacatcagataaaatagtaaaggttgaacac 18603226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 213
Target Start/End: Original strand, 624187 - 624248
Alignment:
Q  150 gtgttggtttgcaagtgtgagagttatatgtcatacatcagataaaatagtaaaggttgaacac 213  Q
    |||||||||||||||||||||  |||||||||  ||||   |||||||||||||||||||||||    
T  624187 gtgttggtttgcaagtgtgag--ttatatgtcccacattgtataaaatagtaaaggttgaacac 624248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 213
Target Start/End: Original strand, 7768837 - 7768902
Alignment:
Q  146 atttgtgttggtttgcaagtgtgagagttatatgtcatacatcagataaaatagtaaaggttgaacac 213  Q
    |||| ||||||||| ||||||||||  |||||| || |||||| ||||||||| ||||||||||||||    
T  7768837 atttttgttggttttcaagtgtgag--ttatatatcctacatcggataaaataataaaggttgaacac 7768902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 213
Target Start/End: Complemental strand, 5723957 - 5723897
Alignment:
Q  151 tgttggtttgcaagtgtgagagttatatgtcatacatcagataaaatagtaaaggttgaacac 213  Q
    ||||||||||||||||||||  |||||||||  ||||| ||||||||| |||| |||||||||    
T  5723957 tgttggtttgcaagtgtgag--ttatatgtcccacatcggataaaataataaaagttgaacac 5723897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 213
Target Start/End: Complemental strand, 26074295 - 26074252
Alignment:
Q  170 gagttatatgtcatacatcagataaaatagtaaaggttgaacac 213  Q
    ||||||||||||| ||||| ||||||| ||||||||||||||||    
T  26074295 gagttatatgtcacacatcggataaaaaagtaaaggttgaacac 26074252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 213
Target Start/End: Complemental strand, 27502202 - 27502142
Alignment:
Q  151 tgttggtttgcaagtgtgagagttatatgtcatacatcagataaaatagtaaaggttgaacac 213  Q
    ||||||||||||||||||||  |||||||||  ||||  |||||||||||||||||| |||||    
T  27502202 tgttggtttgcaagtgtgag--ttatatgtcccacattggataaaatagtaaaggttaaacac 27502142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 213
Target Start/End: Complemental strand, 42405745 - 42405702
Alignment:
Q  170 gagttatatgtcatacatcagataaaatagtaaaggttgaacac 213  Q
    ||||||||||||  ||||| ||||||||||||||||||||||||    
T  42405745 gagttatatgtccaacatcggataaaatagtaaaggttgaacac 42405702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 212
Target Start/End: Complemental strand, 12662801 - 12662759
Alignment:
Q  170 gagttatatgtcatacatcagataaaatagtaaaggttgaaca 212  Q
    ||||||||||||  ||||| |||||||||||||||||||||||    
T  12662801 gagttatatgtcccacatcggataaaatagtaaaggttgaaca 12662759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 212
Target Start/End: Original strand, 35914858 - 35914900
Alignment:
Q  170 gagttatatgtcatacatcagataaaatagtaaaggttgaaca 212  Q
    ||||||||||||| ||||| ||||||| |||||||||||||||    
T  35914858 gagttatatgtcacacatcggataaaagagtaaaggttgaaca 35914900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 213
Target Start/End: Complemental strand, 36492378 - 36492323
Alignment:
Q  156 gtttgcaagtgtgagagttatatgtcatacatcagataaaatagtaaaggttgaacac 213  Q
    |||||||||||||||  |||||||||  ||||| ||||||| ||||||||||||||||    
T  36492378 gtttgcaagtgtgag--ttatatgtcccacatcggataaaagagtaaaggttgaacac 36492323  T

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Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 212
Target Start/End: Original strand, 41170643 - 41170685
Alignment:
Q  170 gagttatatgtcatacatcagataaaatagtaaaggttgaaca 212  Q
    ||||||||||||  ||||| |||||||||||||||||||||||    
T  41170643 gagttatatgtcccacatcggataaaatagtaaaggttgaaca 41170685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 213
Target Start/End: Complemental strand, 3295172 - 3295121
Alignment:
Q  159 tgcaagtgtgagagttatatgtcatacatcagataaaatagtaaaggttgaacac 213  Q
    ||||||||||||   ||||||||  ||||| ||||||||||||||||||||||||    
T  3295172 tgcaagtgtgag---tatatgtcccacatcggataaaatagtaaaggttgaacac 3295121  T

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Target: scaffold0734 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0734
Description:

Target: scaffold0734; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 170 - 213
Target Start/End: Original strand, 5405 - 5448
Alignment:
Q  170 gagttatatgtcatacatcagataaaatagtaaaggttgaacac 213  Q
    |||||||||||| |||||| ||||||||||||||||||||||||    
T  5405 gagttatatgtcctacatcggataaaatagtaaaggttgaacac 5448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0734; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 213
Target Start/End: Original strand, 5786 - 5829
Alignment:
Q  170 gagttatatgtcatacatcagataaaatagtaaaggttgaacac 213  Q
    ||||||||||||  ||||| ||||||||||||||||||||||||    
T  5786 gagttatatgtcgcacatcggataaaatagtaaaggttgaacac 5829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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