View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17152_low_11 (Length: 553)
Name: NF17152_low_11
Description: NF17152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17152_low_11 |
 | |
|
| [»] scaffold0013 (2 HSPs) |
| | |
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Alignment Details
Target: chr8 (Bit Score: 415; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 27 - 543
Target Start/End: Complemental strand, 5722878 - 5722364
Alignment:
| Q |
27 |
atgtatagccaatttgattgaatattgaaactatacagatacttggtatctttgattggcgtgcaagcaacccaatgcctcctgagttttggatgcttcc |
126 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5722878 |
atgtatagccaatttgattgaatattgaaactatacagatacttggtatctttgattggcgtgcaagcaacccaatgcctcctgagttttggatgcttcc |
5722779 |
T |
|
| Q |
127 |
ctcatttcttcttaagcatccaggttgaattaaataacttgtgttgtcactctct--ttatggaacannnnnnnnnnnnnaacttgattcattaaattga |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
5722778 |
ctcatttcttcttaagcatccaggttgaattaaataacttgtgttgtctctctctctttatggaacaatatatata----aacttgattcattaaattga |
5722683 |
T |
|
| Q |
225 |
atgtttatcctatctcatttttaccttttacttaacacagctagaatgttgtgttattgtcgattggtatacatgcctatgtcttacttgtatggaaaga |
324 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5722682 |
atgtttatcctatctcatttttaccttttactaaacacagctagaatgttgtgttattgtcgattggtatacatgcctatgtcttacttgtatggaaaga |
5722583 |
T |
|
| Q |
325 |
ggtttgtcggtccaatcacaccattgatcttaaagttgagagaagaactccttacagaaccttatgaaaaagttgcatggcaaaaagtacgtcacctatg |
424 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
5722582 |
ggtttgtcggtccaatcacaccattgatcttaaagttgagagaagaactccttacagaaccttatgaaaaagttaattggcaaaaagtacgtcacctatg |
5722483 |
T |
|
| Q |
425 |
tgcaaaggtgaggggtattatctttgattaaccccaatttgtgtgtgcacatttcctctttataatatattattaccgttnnnnnnntgcaggaagatct |
524 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
5722482 |
tgcaaaggtgaggggtattatctttgattaaccacaatttgtgtgtgcacatttcctctttataatatattattaccgttaaaaaaatgcaggaagatct |
5722383 |
T |
|
| Q |
525 |
ttactatccacatcctttg |
543 |
Q |
| |
|
||||||||| ||||||||| |
|
|
| T |
5722382 |
ttactatccccatcctttg |
5722364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 51 - 490
Target Start/End: Complemental strand, 5692514 - 5692077
Alignment:
| Q |
51 |
ttgaaactatacagatacttggtatctttgattggcgtgcaagcaacccaatgcctcctgagttttggatgcttccctcatttcttcttaagcatccagg |
150 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5692514 |
ttgaaactatacagatacttggtatctttgattggcgtgcaagcaacccaatgcctcctgagttttggatgcttccctcatttcttcttaagcatccagg |
5692415 |
T |
|
| Q |
151 |
ttgaattaaataacttgtgttgtcactctct--ttatggaacannnnnnnnnnnnnaacttgattcattaaattgaatgtttatcctatctcatttttac |
248 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
5692414 |
ttgaattaaataacttgtgttgtcactctctctttatggaaaaatatatata----aacttgattcattaaattgaatgtttgtcctatctcatttttac |
5692319 |
T |
|
| Q |
249 |
cttttacttaacacagctagaatgttgtgttattgtcgattggtatacatgcctatgtcttacttgtatggaaagaggtttgtcggtccaatcacaccat |
348 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5692318 |
cttttactaaacacagctagaatgttgtgttattgtcgattggtatacatgcctatgtcttacttgtatggaaagaggtttgtcggtccaatcacaccat |
5692219 |
T |
|
| Q |
349 |
tgatcttaaagttgagagaagaactccttacagaaccttatgaaaaagttgcatggcaaaaagtacgtcacctatgtgcaaaggtgaggggtattatctt |
448 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||||| ||||||||| |
|
|
| T |
5692218 |
tgaccttaaagttgagagaagaactccttacagaaccttatgaaaaagttaattggcaaaaagtacgccatctatgtgcaaaggtgaggagtattatctc |
5692119 |
T |
|
| Q |
449 |
tgattaaccccaatttgtgtgtgcacatttcctctttataat |
490 |
Q |
| |
|
||||||||| |||| ||||||| |||| ||||||||||||| |
|
|
| T |
5692118 |
tgattaaccacaatgtgtgtgtttacatatcctctttataat |
5692077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 234 - 479
Target Start/End: Complemental strand, 5670561 - 5670314
Alignment:
| Q |
234 |
ctatctcatttttacctttta--cttaacacagctagaatgttgtgttattgtcgattggtatacatgcctatgtcttacttgtatggaaagaggtttgt |
331 |
Q |
| |
|
|||||||||||||||||| || | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
5670561 |
ctatctcatttttaccttatatacaaaatacagctagaatgttgtgttattgtcgattggtatacatgcctatgtcttacttgtatgggaagaggtttgt |
5670462 |
T |
|
| Q |
332 |
cggtccaatcacaccattgatcttaaagttgagagaagaactccttacagaaccttatgaaaaagttgcatggcaaaaagtacgtcacctatgtgcaaag |
431 |
Q |
| |
|
||||||||| |||||| | |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| || |||||||||||| |
|
|
| T |
5670461 |
cggtccaataacaccactcatcttaaagttgagagaagaactccttacagaacattatgaaaaagttaattggcaaaaagtacgccatctatgtgcaaag |
5670362 |
T |
|
| Q |
432 |
gtgaggggtattatctttgattaaccccaatttgtgtgtgcacatttc |
479 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
5670361 |
gtgaggggtattatctttgattaaccacaatttgtgtgtgcacatttc |
5670314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 27 - 191
Target Start/End: Complemental strand, 5670790 - 5670626
Alignment:
| Q |
27 |
atgtatagccaatttgattgaatattgaaactatacagatacttggtatctttgattggcgtgcaagcaacccaatgcctcctgagttttggatgcttcc |
126 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
5670790 |
atgtatagccaatttgattgaatattgaaactatacagatacttggtatctttgattggcgtgcaagcaacccaatgccccctgagttttggatgcttcc |
5670691 |
T |
|
| Q |
127 |
ctcatttcttcttaagcatccaggttgaattaaataacttgtgttgtcactctctttatggaaca |
191 |
Q |
| |
|
||||||||||||||||||||||||||| |||| | ||| || ||||||||||||||||||||| |
|
|
| T |
5670690 |
ctcatttcttcttaagcatccaggttgtattatcttgcttatgctgtcactctctttatggaaca |
5670626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 475 - 543
Target Start/End: Complemental strand, 5670168 - 5670100
Alignment:
| Q |
475 |
atttcctctttataatatattattaccgttnnnnnnntgcaggaagatctttactatccacatcctttg |
543 |
Q |
| |
|
|||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |
|
|
| T |
5670168 |
atttcctctttataatatattattactgttaaaaaaatgcaggaagatctttactatccacatcctttg |
5670100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 85; Significance: 3e-40; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 262 - 434
Target Start/End: Complemental strand, 12137849 - 12137677
Alignment:
| Q |
262 |
cagctagaatgttgtgttattgtcgattggtatacatgcctatgtcttacttgtatggaaagaggtttgtcggtccaatcacaccattgatcttaaagtt |
361 |
Q |
| |
|
|||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||| | |||||| |||| |
|
|
| T |
12137849 |
cagctaaaatgtggtgttactgtcgattggtatacatgcctatgtcttacttgtatggaaagagatttgtgggttcaatcacaccgctcatcttacagtt |
12137750 |
T |
|
| Q |
362 |
gagagaagaactccttacagaaccttatgaaaaagttgcatggcaaaaagtacgtcacctatgtgcaaaggtg |
434 |
Q |
| |
|
||||||||||||| ||| |||||||||| ||||||| ||| |||||| |||||||| ||||| |||||| |
|
|
| T |
12137749 |
gagagaagaactctatactgaaccttatgcaaaagttaattggaaaaaagcacgtcaccagtgtgcgaaggtg |
12137677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 83; Significance: 5e-39; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 262 - 436
Target Start/End: Original strand, 103448 - 103622
Alignment:
| Q |
262 |
cagctagaatgttgtgttattgtcgattggtatacatgcctatgtcttacttgtatggaaagaggtttgtcggtccaatcacaccattgatcttaaagtt |
361 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||| || ||||| ||||| ||||| ||||||||| | |||||| |||| |
|
|
| T |
103448 |
cagctaaaatgtggtgttattgtcgattggtatacatgcctatgtcttacttgtacgggaagagatttgtgggtccgatcacaccactcatcttacagtt |
103547 |
T |
|
| Q |
362 |
gagagaagaactccttacagaaccttatgaaaaagttgcatggcaaaaagtacgtcacctatgtgcaaaggtgag |
436 |
Q |
| |
|
|||||||||||||| ||| | |||||||||||| || ||| ||| |||||||||||||||||||||||| |
|
|
| T |
103548 |
gagagaagaactccatactcagccttatgaaaaaattaactggacgaaatcacgtcacctatgtgcaaaggtgag |
103622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 261 - 395
Target Start/End: Original strand, 164413 - 164547
Alignment:
| Q |
261 |
acagctagaatgttgtgttattgtcgattggtatacatgcctatgtcttacttgtatggaaagaggtttgtcggtccaatcacaccattgatcttaaagt |
360 |
Q |
| |
|
||||||| ||||| |||||||||||| || ||||||||||| |||||||||||||| || ||||||||||| ||||| ||||||||| | |||||| ||| |
|
|
| T |
164413 |
acagctaaaatgtggtgttattgtcggttagtatacatgccgatgtcttacttgtacgggaagaggtttgtaggtcctatcacaccactcatcttacagt |
164512 |
T |
|
| Q |
361 |
tgagagaagaactccttacagaaccttatgaaaaa |
395 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||| |
|
|
| T |
164513 |
tgagagaagaactccatacccaaccttatgaaaaa |
164547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 63 - 157
Target Start/End: Original strand, 103228 - 103322
Alignment:
| Q |
63 |
agatacttggtatctttgattggcgtgcaagcaacccaatgcctcctgagttttggatgcttccctcatttcttcttaagcatccaggttgaatt |
157 |
Q |
| |
|
||||||||||| ||||||||||| | ||||||||||||||| |||||||||||||| ||||| |||||||||| || ||||||||||| |||| |
|
|
| T |
103228 |
agatacttggtctctttgattggttgggaagcaacccaatgccccctgagttttggatccttccttcatttcttcctatgcatccaggttcaatt |
103322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 63 - 159
Target Start/End: Original strand, 162499 - 162595
Alignment:
| Q |
63 |
agatacttggtatctttgattggcgtgcaagcaacccaatgcctcctgagttttggatgcttccctcatttcttcttaagcatccaggttgaattaa |
159 |
Q |
| |
|
||||||||||| | | ||||||| | ||||||||||||||| |||||||||||||| ||||| |||||||||| || ||||||||||| |||||| |
|
|
| T |
162499 |
agatacttggtgtatatgattggtcgggaagcaacccaatgccccctgagttttggatccttccttcatttcttcctatgcatccaggttcaattaa |
162595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 80; Significance: 3e-37; HSPs: 2)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 262 - 437
Target Start/End: Complemental strand, 92853 - 92678
Alignment:
| Q |
262 |
cagctagaatgttgtgttattgtcgattggtatacatgcctatgtcttacttgtatggaaagaggtttgtcggtccaatcacaccattgatcttaaagtt |
361 |
Q |
| |
|
|||||| ||||| ||| ||||||||| |||||||| | || |||||||||||||| |||||||||||||||||||||||||||||| | ||||| |||| |
|
|
| T |
92853 |
cagctaaaatgtggtgctattgtcgactggtatacttaccgatgtcttacttgtacggaaagaggtttgtcggtccaatcacaccactcgtcttacagtt |
92754 |
T |
|
| Q |
362 |
gagagaagaactccttacagaaccttatgaaaaagttgcatggcaaaaagtacgtcacctatgtgcaaaggtgagg |
437 |
Q |
| |
|
|||||||||||| | ||| ||||||||| |||||| ||| |||||| ||| ||||||||||||||||||||| |
|
|
| T |
92753 |
gagagaagaacttcatactcaaccttatggtaaagttaactggaaaaaagcacgccacctatgtgcaaaggtgagg |
92678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 63 - 154
Target Start/End: Complemental strand, 93138 - 93047
Alignment:
| Q |
63 |
agatacttggtatctttgattggcgtgcaagcaacccaatgcctcctgagttttggatgcttccctcatttcttcttaagcatccaggttga |
154 |
Q |
| |
|
||||||||||| | ||||||||| ||| ||||||||||||||| ||||| |||||| | ||||| |||||||| | || ||||||||||||| |
|
|
| T |
93138 |
agatacttggtctttttgattggagtggaagcaacccaatgccacctgaattttggctccttccttcatttctccctatgcatccaggttga |
93047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 68; Significance: 4e-30; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 269 - 436
Target Start/End: Original strand, 13052380 - 13052547
Alignment:
| Q |
269 |
aatgttgtgttattgtcgattggtatacatgcctatgtcttacttgtatggaaagaggtttgtcggtccaatcacaccattgatcttaaagttgagagaa |
368 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||||||||||||||| || ||||||||||| |||| |||||||||| | |||||| ||||||||||| |
|
|
| T |
13052380 |
aatgtggtgttattgtcgattgacatacatgcctatgtcttacttgtacgggaagaggtttgtgggtcgaatcacaccactcatcttacagttgagagaa |
13052479 |
T |
|
| Q |
369 |
gaactccttacagaaccttatgaaaaagttgcatggcaaaaagtacgtcacctatgtgcaaaggtgag |
436 |
Q |
| |
|
||| | | || ||||||| |||||||||| ||| ||| |||||||| ||||||||||||||| |
|
|
| T |
13052480 |
gaaattcataatcaaccttacgaaaaagttgattggttcaaatcacgtcaccaatgtgcaaaggtgag |
13052547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 63 - 158
Target Start/End: Original strand, 13052180 - 13052275
Alignment:
| Q |
63 |
agatacttggtatctttgattggcgtgcaagcaacccaatgcctcctgagttttggatgcttccctcatttcttcttaagcatccaggttgaatta |
158 |
Q |
| |
|
||||||||||| | ||||||||| || | ||||||| ||||| |||||||||||||| || || |||||||||| || ||||||||||| ||||| |
|
|
| T |
13052180 |
agatacttggtgtatttgattggtctggatgcaacccgatgccccctgagttttggatcctaccttcatttcttcctatgcatccaggttcaatta |
13052275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 298 - 347
Target Start/End: Complemental strand, 1942043 - 1941994
Alignment:
| Q |
298 |
tgcctatgtcttacttgtatggaaagaggtttgtcggtccaatcacacca |
347 |
Q |
| |
|
|||| |||| ||||||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
1942043 |
tgccaatgtgttacttgtacggaaagaggtttgttggtccaatcacacca |
1941994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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