View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17152_low_14 (Length: 539)

Name: NF17152_low_14
Description: NF17152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17152_low_14
NF17152_low_14
[»] chr3 (10 HSPs)
chr3 (27-400)||(22852595-22852974)
chr3 (39-374)||(22838582-22838920)
chr3 (44-397)||(22796966-22797322)
chr3 (35-250)||(22828243-22828458)
chr3 (466-532)||(22852463-22852529)
chr3 (118-317)||(22780499-22780698)
chr3 (467-524)||(22827993-22828050)
chr3 (466-522)||(22838434-22838490)
chr3 (466-513)||(22796850-22796897)
chr3 (466-513)||(22815698-22815745)
[»] chr8 (2 HSPs)
chr8 (44-397)||(5620633-5620989)
chr8 (466-513)||(5621058-5621105)


Alignment Details
Target: chr3 (Bit Score: 287; Significance: 1e-161; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 27 - 400
Target Start/End: Complemental strand, 22852974 - 22852595
Alignment:
Q  27 aatggaacagcgacccgaaatccaaaccgggtcggtcaaacttctcggacctgacga---ctggaggaacaagagcaatcttcagaacatgagcatctcg 123  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||   |||||| |||   |||||||||||||||||||||||||||    
T  22852974 aatggaacaacgacccgaaatccaaaccgggtcggtcaaacttctcggacctgatgatgactggagaaaccgtagcaatcttcagaacatgagcatctcg 22852875  T
Q  124 gagctcgtttccgagctccgagacacgttcatacaaagcgatttcgacgtcgtcgaagaagctctagtttccagagaagcaatgttgaaagctgaaatca 223  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22852874 gagctcgtttccgagctcagagacacgttcatacaaagcgatttcgacgtcgtcgaagaagctctagtttccagagaagcaatgttgaaagctgaaatca 22852775  T
Q  224 aagagaaaaagaaagaaattcagttgttagaagagaaatgtcaaatggagaggttagagaaggttagtgttgatatggagctgaagagagtgaaagnnnn 323  Q
    ||||||||||||||||| || |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  22852774 aagagaaaaagaaagaacttaagttgttagaagagaaatttcaaatggagaggttagagaaggttagtgttgatatggagctgaagagagtgaaagaaga 22852675  T
Q  324 nnngtgt---aagcagttggtgaagaattgtggtgttgtgaaaggggaattagggtttggaagatgtattgttgagggga 400  Q
       ||||   ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22852674 aaggtgtaagaaggagttggtgaagaattgtggtgttgtgaaaggggaattagggtttggaagatgtattgttgagggga 22852595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 39 - 374
Target Start/End: Complemental strand, 22838920 - 22838582
Alignment:
Q  39 acccgaaatccaaaccgggtcggtcaaacttctcggacctgacgactggaggaacaagagcaatcttcagaacatgagcatctcggagctcgtttccgag 138  Q
    ||||||||||| |||||| || |||||||||  ||||||| | |||||||| | |  ||| ||| | || ||||||||||||||| ||||| ||||| ||    
T  22838920 acccgaaatccgaaccggatctgtcaaactttccggacctaatgactggagaagccggagaaatatgcaaaacatgagcatctcgaagctcatttccaag 22838821  T
Q  139 ctccgagacacgttcatacaaagcgatttcgacgtcgtcgaagaagctctagtttccagagaagcaatgttgaaagctgaaatcaaagagaaaaagaaag 238  Q
    ||||||||||||||||||||||| |||||||| |  || |||||| | |||||| | || ||||||||| | ||| |||||||||||||||| |||||      
T  22838820 ctccgagacacgttcatacaaagggatttcgatgctgttgaagaaaccctagttgctagggaagcaatgctcaaaactgaaatcaaagagaagaagaaga 22838721  T
Q  239 aaattcagttgttagaagagaaatgtcaaatggagaggttagagaaggttagtgttgatatggagctgaagagagtgaaagnnnnnnngtgtaag---ca 335  Q
    ||||| |||| || ||| |||||| ||||||||||||||  || ||| ||||||| || |||||||||||||| || ||||       || ||||    |    
T  22838720 aaattgagttatttgaaaagaaatttcaaatggagaggtcggataagattagtgtggagatggagctgaagagggtaaaagaagaaaggtataagaacga 22838621  T
Q  336 gttggtgaagaattgtggtgttgtgaaaggggaattagg 374  Q
    ||||||||| ||| ||||||||||||||||| |||||||    
T  22838620 gttggtgaaaaatggtggtgttgtgaaagggaaattagg 22838582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 44 - 397
Target Start/End: Complemental strand, 22797322 - 22796966
Alignment:
Q  44 aaatccaaaccgggtcggtcaaacttctcggacctgacgactggaggaacaagagcaatcttcagaacatgagcatctcggagctcgtttccgagctccg 143  Q
    |||||| |||| ||||  ||||||||  ||||||| | | |||||| |||  ||| ||| | || |||||||||||||| ||| |  ||||| |||||||    
T  22797322 aaatccgaaccaggtctctcaaactttccggacctaatggctggagaaacctgagaaatatgcaaaacatgagcatctcagagtttatttccaagctccg 22797223  T
Q  144 agacacgttcatacaaagcgatttcgacgtcgtcgaagaagctctagtttccagagaagcaatgttgaaagctgaaatcaaagagaaaaagaaagaaatt 243  Q
    ||||||||||||||||||  ||||||| |  ||||||||| | ||| || | || ||||||||||| ||| |  ||||||||||||| |||||  |||||    
T  22797222 agacacgttcatacaaaggaatttcgatgatgtcgaagaaaccctaattgctagggaagcaatgttcaaaacaaaaatcaaagagaagaagaagcaaatt 22797123  T
Q  244 cagttgttagaagagaaatgtcaaatggagaggttagagaaggttagtgttgatatggagctgaagagagtgaaagnnnnnnngtgtaag---cagttgg 340  Q
     ||||||| ||| |||||| ||||||| |||||| ||| ||||||||||| || || ||||||||||| |||||||       || ||||    ||||||    
T  22797122 gagttgttcgaaaagaaatttcaaatgaagaggtcagataaggttagtgtggagatagagctgaagagggtgaaagaagaaaggtataagaacgagttgg 22797023  T
Q  341 tgaagaattgtggtgttgtgaaaggggaattagggtttggaagatgtattgttgagg 397  Q
    |||||||| ||||||||||||||| | ||||||||| | |||| ||||||| |||||    
T  22797022 tgaagaatggtggtgttgtgaaagagaaattagggtctcgaaggtgtattgatgagg 22796966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 35 - 250
Target Start/End: Complemental strand, 22828458 - 22828243
Alignment:
Q  35 agcgacccgaaatccaaaccgggtcggtcaaac-ttctcggacctgacgactggaggaacaagagcaatcttcagaacatgagcatctcggagctcgttt 133  Q
    |||||||| |||||| |||||| ||  |||||| |||| |||||| | |||||||| ||| |||||||| | || |||||||||||||| ||| || |||    
T  22828458 agcgacccaaaatccgaaccggatctctcaaacattct-ggacctaatgactggagaaaccagagcaatatgcaaaacatgagcatctcagagttcattt 22828360  T
Q  134 ccgagctccgagacacgttcatacaaagcgatttcgacgtcgtcgaagaagctctagtttccagagaagcaatgttgaaagctgaaatcaaagagaaaaa 233  Q
    || ||||||||||||||||||||||||| |||||||| || ||||||||| | |||||||| || ||||||||||| ||| |||||||||||||||| ||    
T  22828359 ccaagctccgagacacgttcatacaaagggatttcgatgttgtcgaagaaaccctagtttctagggaagcaatgttcaaaactgaaatcaaagagaagaa 22828260  T
Q  234 gaaagaaattcagttgt 250  Q
    |||  ||||| ||||||    
T  22828259 gaagaaaattgagttgt 22828243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 466 - 532
Target Start/End: Complemental strand, 22852529 - 22852463
Alignment:
Q  466 cagaggatgaatgatggtggaggtggttcaggtatggaaattctaagtatttgtttgatgatgatgt 532  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  22852529 cagaggatgaatgatggtggaggtggttcaggtatggaaattctaagtttttgtttgatgattatgt 22852463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 118 - 317
Target Start/End: Complemental strand, 22780698 - 22780499
Alignment:
Q  118 atctcggagctcgtttccgagctccgagacacgttcatacaaagcgatttcgacgtcgtcgaagaagctctagtttccagagaagcaatgttgaaagctg 217  Q
    |||||||||||||| |||||||||||||| ||||| |||||    ||||||||||| ||||||||| | ||| || | || ||||||   ||||||| ||    
T  22780698 atctcggagctcgtatccgagctccgagatacgtttatacagtcagatttcgacgttgtcgaagaaaccctaattgctagggaagcagcattgaaaggtg 22780599  T
Q  218 aaatcaaagagaaaaagaaagaaattcagttgttagaagagaaatgtcaaatggagaggttagagaaggttagtgttgatatggagctgaagagagtgaa 317  Q
    | ||  | ||||| || || |||||| ||||||| |||||||||| | | |||  || ||| ||||||||||||||||| |||||||||||||| |||||    
T  22780598 agattgatgagaagaataatgaaattaagttgttggaagagaaatttgatatgttgatgttggagaaggttagtgttgaaatggagctgaagagggtgaa 22780499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 467 - 524
Target Start/End: Complemental strand, 22828050 - 22827993
Alignment:
Q  467 agaggatgaatgatggtggaggtggttcaggtatggaaattctaagtatttgtttgat 524  Q
    |||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||    
T  22828050 agaggatgaaagatggtggaggtggttcaggtatggaaattcaaagtttttgtttgat 22827993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 466 - 522
Target Start/End: Complemental strand, 22838490 - 22838434
Alignment:
Q  466 cagaggatgaatgatggtggaggtggttcaggtatggaaattctaagtatttgtttg 522  Q
    ||||||||||| ||||||||||||||||||||||||||||||| ||||  |||||||    
T  22838490 cagaggatgaaagatggtggaggtggttcaggtatggaaattcaaagttcttgtttg 22838434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 466 - 513
Target Start/End: Complemental strand, 22796897 - 22796850
Alignment:
Q  466 cagaggatgaatgatggtggaggtggttcaggtatggaaattctaagt 513  Q
    ||||||||||| ||||||||||||| ||||||||||||||||| ||||    
T  22796897 cagaggatgaaagatggtggaggtgtttcaggtatggaaattcaaagt 22796850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 466 - 513
Target Start/End: Complemental strand, 22815745 - 22815698
Alignment:
Q  466 cagaggatgaatgatggtggaggtggttcaggtatggaaattctaagt 513  Q
    ||||||||||| ||||||| ||||||||||||||||||||||| ||||    
T  22815745 cagaggatgaaagatggtgaaggtggttcaggtatggaaattcaaagt 22815698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 86; Significance: 7e-41; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 44 - 397
Target Start/End: Original strand, 5620633 - 5620989
Alignment:
Q  44 aaatccaaaccgggtcggtcaaacttctcggacctgacgactggaggaacaagagcaatcttcagaacatgagcatctcggagctcgtttccgagctccg 143  Q
    |||||| |||| ||||  ||||||||  ||||||| | | |||||| |||  ||| ||| | || |||||||||||||| ||| |  ||||| |||||||    
T  5620633 aaatccgaaccaggtctctcaaactttccggacctaatggctggagaaacctgagaaatatgcaaaacatgagcatctcagagtttatttccaagctccg 5620732  T
Q  144 agacacgttcatacaaagcgatttcgacgtcgtcgaagaagctctagtttccagagaagcaatgttgaaagctgaaatcaaagagaaaaagaaagaaatt 243  Q
    ||||||||||||||||||  ||||||| |  ||||||||| | ||| || | || ||||||||||| ||| |  ||||||||||||| |||||  |||||    
T  5620733 agacacgttcatacaaaggaatttcgatgatgtcgaagaaaccctaattgctagggaagcaatgttcaaaacaaaaatcaaagagaagaagaagcaaatt 5620832  T
Q  244 cagttgttagaagagaaatgtcaaatggagaggttagagaaggttagtgttgatatggagctgaagagagtgaaagnnnnnnngtgtaag---cagttgg 340  Q
     ||||||| ||| |||||| ||||||| |||||| ||| ||||||||||| || || ||||||||||| |||||||       || ||||    ||||||    
T  5620833 gagttgttcgaaaagaaatttcaaatgaagaggtcagataaggttagtgtggagatagagctgaagagggtgaaagaagaaaggtataagaacgagttgg 5620932  T
Q  341 tgaagaattgtggtgttgtgaaaggggaattagggtttggaagatgtattgttgagg 397  Q
    |||||||| ||||||||||||||| | ||||||||| | |||| ||||||| |||||    
T  5620933 tgaagaatggtggtgttgtgaaagagaaattagggtctcgaaggtgtattgatgagg 5620989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 466 - 513
Target Start/End: Original strand, 5621058 - 5621105
Alignment:
Q  466 cagaggatgaatgatggtggaggtggttcaggtatggaaattctaagt 513  Q
    ||||||||||| ||||||||||||| ||||||||||||||||| ||||    
T  5621058 cagaggatgaaagatggtggaggtgtttcaggtatggaaattcaaagt 5621105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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