View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17152_low_15 (Length: 526)
Name: NF17152_low_15
Description: NF17152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17152_low_15 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 19 - 526
Target Start/End: Original strand, 51291849 - 51292360
Alignment:
| Q |
19 |
ttgaatcacaacactatgcgcccccacgcattggacagagtcagaggccatccagaaatcaagttttccaaacctcctcttttgcacatgataatattta |
118 |
Q |
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| T |
51291849 |
ttgaatcacaacactatgcgcccccacgcattggacagagtcagaggccatccagaaatcaagttttccaaacctcctcttttgtacatgataatattta |
51291948 |
T |
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| Q |
119 |
agtcacactcaacacatatgaacatgcattttgaagaaccataatcctcagccatcaattattaccggaaatttaccaaatcgcaagtggctttttagag |
218 |
Q |
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| T |
51291949 |
agtcacactcaacacatatgaacatgcattttgaagaaccataatcctcagccatcaattattaccggaaatttaccaaatcgcaagtggctttttagag |
51292048 |
T |
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| Q |
219 |
gattattatatatagttgtacaccaacggtatctaactttttccctttaaaacgagattaatgnnnnnnnnnnnnnnnnncaatacaacaaataatatga |
318 |
Q |
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| T |
51292049 |
gattattatatatagttgtacaccaacggtatctaactttttccctttaaaatgagattaatgaaaaagtaaaaagaaaacaatacaacaaataatatga |
51292148 |
T |
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| Q |
319 |
ttagtgaataagagcaataaaatacctttaacaataacaatgattgatatataaagagtaaagatatcgtaccttgtatttgatcaagttcaattgtacg |
418 |
Q |
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| T |
51292149 |
ttagtgaataagagcaataaaatacctttaacaataacaatgaatgatatataaagagtaaagatatcgtgccttgtatttgatcaagttcaattgtacg |
51292248 |
T |
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| Q |
419 |
aaatatacgtataccaactgtaccctctattgaagatcccttaagaattaagatctcataaagttaagacagcttg----atagcacaaatatcagcctt |
514 |
Q |
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| T |
51292249 |
aaatatacgtataccaactgtaccctctattgaagatcccttaagaattaagatctcataaagttaagacagcttgatatatagcacaaatatcagcctt |
51292348 |
T |
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| Q |
515 |
tgcttctccact |
526 |
Q |
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| T |
51292349 |
agcttcaccact |
51292360 |
T |
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