View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17152_low_17 (Length: 500)
Name: NF17152_low_17
Description: NF17152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17152_low_17 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 461; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 20 - 488
Target Start/End: Complemental strand, 39679904 - 39679436
Alignment:
| Q |
20 |
cttgggccaacaaaccttgttcaccccaccaattttctgatcctgtgggccaccagggaggagaaattcccctctcgagtggaaacctcctctgtggtgg |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39679904 |
cttgggccaacaaaccttgttcaccccaccaattttctgatcctgtgggccaccagggaggagaaattcccctctcgagtggaaacctcctctgtggtgg |
39679805 |
T |
|
| Q |
120 |
cacacaatgttgcattaaagcagaaagaagcgaaccaagagttgaatcttgtaaatcttggaggagatgtatgtaagaatttgggtcagccattatagta |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39679804 |
cacacaatgttgcattaaagcagaaagaagcgaaccaagagttgaatcttgtaaatcttggaggagatgtatgtaagaatttgggtcagccattatagta |
39679705 |
T |
|
| Q |
220 |
ttaaaatgttcgtcttctcgaaggagtggtaagtattttgcaaccgcgagtggcgcactttgatcaaaacggatttgatctttccaccattcgcgtaaac |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39679704 |
ttaaaatgttcgtcttctcgaaggagtggtaagtattttgcaaccgcgagtggcgcgctttgatcaaaacggatttgatctttccaccattcgcgtaaac |
39679605 |
T |
|
| Q |
320 |
tatcagacgaacctgataccggtttacccttttcagggatgattccatagacaaaacctttggctttgcatacatccatgatctttgccatgtatttgag |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39679604 |
tatcagacgaacctgataccggtttacccttttcagggatgattccatagacaaaacctttggctttgcatacatccatgatctttgccatgtatttgag |
39679505 |
T |
|
| Q |
420 |
tactgaatcttgtgctcttgacatctttttccttcttgatgcttcttgttttgcttgttgcacaggttc |
488 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
39679504 |
tactgaatcttgtgctcttgacatctttttccttcttgatgcttcttgttttgcttgttgctcaggttc |
39679436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 298 - 479
Target Start/End: Complemental strand, 38052169 - 38051988
Alignment:
| Q |
298 |
tctttccaccattcgcgtaaactatcagacgaacctgataccggtttacccttttcagggatgattccatagacaaaacctttggctttgcatacatcca |
397 |
Q |
| |
|
|||||||||||||| || || || || || ||||||| ||| ||||| || || || || | || |||||||||||||||| |||||||||| || |
|
|
| T |
38052169 |
tctttccaccattcacgcaagctttctgaagaacctgttactggttttcctttctctggaacaataccatagacaaaaccttgagctttgcatattgtca |
38052070 |
T |
|
| Q |
398 |
tgatctttgccatgtatttgagtactgaatcttgtgctcttgacatctttttccttcttgatgcttcttgttttgcttgttg |
479 |
Q |
| |
|
| ||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||| || | |||||||||||| |
|
|
| T |
38052069 |
taatcttcatcatgtatttgagaattgaatcttgtgctcttgacatctttttccttcttgatgcctcatcttttgcttgttg |
38051988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University