View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17152_low_18 (Length: 493)

Name: NF17152_low_18
Description: NF17152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17152_low_18
NF17152_low_18
[»] chr3 (8 HSPs)
chr3 (12-478)||(9394140-9394607)
chr3 (29-149)||(9405800-9405920)
chr3 (29-149)||(9424047-9424168)
chr3 (224-321)||(9334665-9334762)
chr3 (305-342)||(9405664-9405701)
chr3 (427-474)||(9580161-9580208)
chr3 (85-134)||(9696977-9697026)
chr3 (54-150)||(9335462-9335557)
[»] chr6 (2 HSPs)
chr6 (154-198)||(213647-213691)
chr6 (268-305)||(9170143-9170180)
[»] chr1 (1 HSPs)
chr1 (271-335)||(15038698-15038762)


Alignment Details
Target: chr3 (Bit Score: 435; Significance: 0; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 12 - 478
Target Start/End: Complemental strand, 9394607 - 9394140
Alignment:
Q  12 cattattcatattagtcgatctttattgattctcctatttgttttggcatggtaattgaatttattccctcccatatttcaacaagtttatgcaattaga 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9394607 cattattcatattagtcgatctttattgattctcctatttgttttggcatggtaattgaatttattccctcccatatttcaacaagtttatgcaattaga 9394508  T
Q  112 ggaaatcaaaataatttaagaaactggccaaatggtatcttttgaatatatgcaggatatcaacatgaaaagttattattatgaagtaatttctaaacta 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9394507 ggaaatcaaaataatttaagaaactggccaaatggtatcttttgaatatatgcaggatatcaacatgaaaagttattattatgaagtaatttctaaacta 9394408  T
Q  212 gacgtaacttaaattgtgaaaaatgctgttctgagtaactttctatggtttgatctgtcttctttgtttcttgtttacttagattcggttttgaaacttc 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  9394407 gacgtaacttaaattgtgaaaaatgctgttctgagtaactttctatggtttgatctgtcttctttgtttcttgtttactaagattcggttttgaaacttc 9394308  T
Q  312 atcctttatttgtgtctatttggattggaagatttcttttttgtacttgtacataaatcatgtacttaggttttaaccatattttcgctaattcaaagaa 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9394307 atcctttatttgtgtctatttggattggaagatttcttttttgtacttgtacataaatcatgtacttaggttttaaccatattttcgctaattcaaagaa 9394208  T
Q  412 agac-nnnnnnnggaaatagaaaatcattttaattttataaattatcattgacatgatttattagcat 478  Q
    ||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9394207 agacaaaaaaaaggaaatagaaaatcattttaattttataaattatcattgacatgatttattagcat 9394140  T

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Target: chr3; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 29 - 149
Target Start/End: Complemental strand, 9405920 - 9405800
Alignment:
Q  29 gatctttattgattctcctatttgttttggcatggtaattgaatttattccctcccatatttcaacaagtttatgcaattagaggaaatcaaaataattt 128  Q
    |||||||||||||||||||||||||||||  ||| |||||||||||||||| ||| |||||||||||||||||||||||||||| |||| ||||||||||    
T  9405920 gatctttattgattctcctatttgttttgagatgctaattgaatttattccttccgatatttcaacaagtttatgcaattagagaaaataaaaataattt 9405821  T
Q  129 aagaaactggccaaatggtat 149  Q
    |||||||||||||||||||||    
T  9405820 aagaaactggccaaatggtat 9405800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 29 - 149
Target Start/End: Complemental strand, 9424168 - 9424047
Alignment:
Q  29 gatctttattgattctcctatttgttttggc-atggtaattgaatttattccctcccatatttcaacaagtttatgcaattagaggaaatcaaaataatt 127  Q
    ||||||||||||||||||| ||| |||| |  |||||||||||||||||||| ||| |||||||||||||||||||||||||||| |||| |||||||||    
T  9424168 gatctttattgattctcctttttttttttgagatggtaattgaatttattccttccgatatttcaacaagtttatgcaattagagaaaataaaaataatt 9424069  T
Q  128 taagaaactggccaaatggtat 149  Q
    ||||||||||||||||||||||    
T  9424068 taagaaactggccaaatggtat 9424047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 224 - 321
Target Start/End: Complemental strand, 9334762 - 9334665
Alignment:
Q  224 attgtgaaaaatgctgttctgagtaactt-tctatggtttgatctgtcttctttgtttcttgtttacttagattcggttttgaaacttcatcctttatt 321  Q
    |||||||||| ||| |||||||||||||| ||||||  || ||||||| ||||||||| | |||||||| |||| |||||||| | |||||||||||||    
T  9334762 attgtgaaaagtgcagttctgagtaacttatctatgactt-atctgtcctctttgtttgtcgtttactttgattaggttttgatagttcatcctttatt 9334665  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 305 - 342
Target Start/End: Complemental strand, 9405701 - 9405664
Alignment:
Q  305 aaacttcatcctttatttgtgtctatttggattggaag 342  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  9405701 aaacttcatcctttatttgtgtctattaggattggaag 9405664  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 427 - 474
Target Start/End: Original strand, 9580161 - 9580208
Alignment:
Q  427 atagaaaatcattttaattttataaattatcattgacatgatttatta 474  Q
    |||||||||||||||||||||||||||| || | |||||| |||||||    
T  9580161 atagaaaatcattttaattttataaattttcctcgacatggtttatta 9580208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 134
Target Start/End: Original strand, 9696977 - 9697026
Alignment:
Q  85 atatttcaacaagtttatgcaattagaggaaatcaaaataatttaagaaa 134  Q
    |||||||||| || ||||||| |||||| ||||||||||| |||||||||    
T  9696977 atatttcaactagcttatgcagttagagcaaatcaaaatagtttaagaaa 9697026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 54 - 150
Target Start/End: Complemental strand, 9335557 - 9335462
Alignment:
Q  54 tttggcatggtaattgaatttattccctcccatatttcaacaagtttatgcaattagaggaaatcaaaataatttaagaaactggccaaatggtatc 150  Q
    |||||||||  | ||||||| |||||||  |||||||||||  |||| |||| |||||| ||||||   || |||||||||||| ||||||||||||    
T  9335557 tttggcatgtcagttgaattcattccctgtcatatttcaacttgttt-tgcagttagagcaaatcactttagtttaagaaactgaccaaatggtatc 9335462  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 154 - 198
Target Start/End: Original strand, 213647 - 213691
Alignment:
Q  154 tgaatatatgcaggatatcaacatgaaaagttattattatgaagt 198  Q
    ||||||||||||||| |||| ||||| ||||||||||||||||||    
T  213647 tgaatatatgcaggacatcaccatgacaagttattattatgaagt 213691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 305
Target Start/End: Complemental strand, 9170180 - 9170143
Alignment:
Q  268 gtcttctttgtttcttgtttacttagattcggttttga 305  Q
    |||||||| |||||||||||||||||||| ||||||||    
T  9170180 gtcttcttcgtttcttgtttacttagattaggttttga 9170143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 271 - 335
Target Start/End: Complemental strand, 15038762 - 15038698
Alignment:
Q  271 ttctttgtttcttgtttacttagattcggttttgaaacttcatcctttatttgtgtctatttgga 335  Q
    ||||| |||||||||||| ||||||| ||||  || | |||||||||| ||||| ||||||||||    
T  15038762 ttcttggtttcttgtttagttagattaggttcagatagttcatcctttgtttgtatctatttgga 15038698  T

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