View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17152_low_19 (Length: 483)
Name: NF17152_low_19
Description: NF17152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17152_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 109; Significance: 1e-54; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 116 - 224
Target Start/End: Complemental strand, 19252910 - 19252802
Alignment:
| Q |
116 |
gaccaagactttagcatcagtcaactcaaacattccgattctacaactcatcagtgtcatcatatcatatgaagcacagactcggacacggacaccggac |
215 |
Q |
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| T |
19252910 |
gaccaagactttagcatcagtcaactcaaacattccgattctacaactcatcagtgtcatcatatcatatgaagcacagactcggacacggacaccggac |
19252811 |
T |
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| Q |
216 |
acaacatat |
224 |
Q |
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| T |
19252810 |
acaacatat |
19252802 |
T |
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Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 278 - 358
Target Start/End: Complemental strand, 19252747 - 19252670
Alignment:
| Q |
278 |
cgtacggaaatgggaagaacaagtcaacaacaagccattgttgttggtaaaagggtacctgaaaaaggataaggtgacaac |
358 |
Q |
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| T |
19252747 |
cgtacggaaatgggaagaacaagtcaacaa---gccattgttgttggtaaaagggtacctgaaaaaggataaggtgacaac |
19252670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 410 - 473
Target Start/End: Complemental strand, 19252618 - 19252555
Alignment:
| Q |
410 |
gggtttataggaatattgagggaagacaaggtggtgagtgtagttgtatgagataatgtctgtg |
473 |
Q |
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| T |
19252618 |
gggtttataggaatattgagggaagacaaggtggtgagtgtagttgtatgagataatgtgtgtg |
19252555 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 178 - 218
Target Start/End: Complemental strand, 17568789 - 17568749
Alignment:
| Q |
178 |
tatcatatgaagcacagactcggacacggacaccggacaca |
218 |
Q |
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| T |
17568789 |
tatcatatgaagcacggatacggacacggacaccggacaca |
17568749 |
T |
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