View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17152_low_2 (Length: 784)
Name: NF17152_low_2
Description: NF17152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17152_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 616; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 616; E-Value: 0
Query Start/End: Original strand, 15 - 769
Target Start/End: Complemental strand, 28741136 - 28740374
Alignment:
| Q |
15 |
aatttgtaattatagttacagtgctaatgcatatatcttcatgttaaaacctatataccacttttgtgaatcgaaattcaaaactataattagatcaatc |
114 |
Q |
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|||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |
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| T |
28741136 |
aatttgtaattacagttacagtgctaatgcatatatctttatgttaaaacctatataccacttttgcgaattgaaattcaaaactataattagatcaatc |
28741037 |
T |
|
| Q |
115 |
atgtgatatataaaaacaactcaatctaataaaagatgagagagaagaaggagggagaaaggggttgtctagggcattt-ggtgaaggcagctcaaaaag |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
28741036 |
atgtgatatataaaaacaactcaatctaataaaagatgagagagaagaaggagggagaaaggggttgtctagggcattttggtgaaggcagctcaaaaag |
28740937 |
T |
|
| Q |
214 |
gtgacgtaaacttctccaagcgagcaatcttgtgcaataaagtgttttctaaaagtgcactgttcatactcagggacctaattgcaagttcaggaggact |
313 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
28740936 |
gtaacgtaaacttctccaagcgagcaatcttgtgcaataaagtgttttctaaaagtgcgctgttcatactcagggacctaattgcaagttcaggaggact |
28740837 |
T |
|
| Q |
314 |
actttgtaaacagaaaataaccaatgtaaagtgagtataggcataagttagcgatgcgtaacacacaagagtttagcttatatatgtatatgtctaaaat |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28740836 |
actttgtaaacagaaaataaccaatgtaaagtgagtataggcataagttagcgatgcgtaacacacaagagtttagcttatatatgtatatgtctaaaat |
28740737 |
T |
|
| Q |
414 |
actttcgtagaattctaacccttagaaatgggaac---tttgagaatcgacttagatagtcgagaatacttaggctactgatgtaactagaggcatatta |
510 |
Q |
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| T |
28740736 |
actttcgtaaaattctaacccttagaaatgggaacataatagagaatcgacttagatagtcgagaatagttaggttactgatgtaactagaggcatatta |
28740637 |
T |
|
| Q |
511 |
gatttatgctacatacaatgctttcagatacgcgtgtgcgtgt----atacatatgtcgataagttgtggcttagttaagctccagactatgtttggata |
606 |
Q |
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||||||||||||| |||||||||||||||||| ||||| |||| | ||| ||||||||||||||||| |||| ||||||||||| |||||||||||| |
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| T |
28740636 |
gatttatgctacaaacaatgctttcagatacgtgtgtgtgtgtacacacacacatgtcgataagttgtggattaggtaagctccagattatgtttggata |
28740537 |
T |
|
| Q |
607 |
ggtcagcccgtcaagtaaccttcatgacgattcgaacatatgcatatgtacagataataattgagaataagttaagttgtgtccttcgaggctccagatc |
706 |
Q |
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| T |
28740536 |
ggtcagcccgtcaaggatccttcgtgacgattcgaacatatgcatatggacaaataataattgagaataagttaagttgtgtccttcaaggctccagatc |
28740437 |
T |
|
| Q |
707 |
atgctggatgggatttcccctgcaagggaaatttacgcaagaacggttaagtcgtgtcctttg |
769 |
Q |
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| T |
28740436 |
atgctggatgggatttcccctgcaagggaaatttacgcaagaacagttaagttgtgtcctttg |
28740374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 676 - 738
Target Start/End: Complemental strand, 28740392 - 28740331
Alignment:
| Q |
676 |
agttaagttgtgtccttcgaggctccagatcatgctggatgggatttcccctgcaagggaaat |
738 |
Q |
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| T |
28740392 |
agttaagttgtgtcctttgaggctccagattatgctggatgggatttcccc-gcaagggaaat |
28740331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 95; Significance: 5e-46; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 246 - 475
Target Start/End: Original strand, 23695598 - 23695833
Alignment:
| Q |
246 |
tgcaataaagtgttttctaaaa-gtgcactgttcatactcagggacctaattgcaagttcaggaggactactttgtaaacagaaaataaccaatgtaaag |
344 |
Q |
| |
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|||| |||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||| || || |||||||| |||| |||||||||||||| |
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| T |
23695598 |
tgcagtaaagtattttctaaaaagtgcactgttcatactcagggacctaattgcaatttcaggatgattattttgtaaattgaaagtaaccaatgtaaag |
23695697 |
T |
|
| Q |
345 |
tgagtataggcataagttagcgatgcgtaacacacaagagtttagcttatatatgtatatgtct-aaaatactttcgtagaattctaacccttagaaatg |
443 |
Q |
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| |||||||||||||| || | ||||||||||||| |||||||| ||||||||||||||||| | | | |||| || | ||||||||||||||||||| |
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| T |
23695698 |
tcagtataggcataagatatcaatgcgtaacacacgagagtttaacttatatatgtatatgtatgacattactcgggttggattctaacccttagaaatg |
23695797 |
T |
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| Q |
444 |
ggaacttt----gagaatcgacttagatagtcgaga |
475 |
Q |
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||| ||| |||| |||||| |||||||||||| |
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| T |
23695798 |
agaattttagtagagactcgactcagatagtcgaga |
23695833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 560 - 647
Target Start/End: Original strand, 20919853 - 20919940
Alignment:
| Q |
560 |
atgtcgataagttgtggcttagttaagctccagactatgtttggataggtcagcccgtcaagtaaccttcatgacgattcgaacatat |
647 |
Q |
| |
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||||||| ||||||||||| || ||||| |||||||||||| |||||||||| ||| ||| | ||||||||||| || ||| |||||| |
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| T |
20919853 |
atgtcgacaagttgtggctcaggtaagcaccagactatgttaggataggtcaacccatcagggaaccttcatgatgactcgtacatat |
20919940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 676 - 759
Target Start/End: Complemental strand, 12399089 - 12399008
Alignment:
| Q |
676 |
agttaagttgtgtccttcgaggctccagatcatgctggatgggatttcccctgcaagggaaatttacgcaagaacggttaagtc |
759 |
Q |
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||||||||||||||| || ||||||||||| ||| |||||||||||||||| |||| |||||| ||| ||| ||| |||||||| |
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| T |
12399089 |
agttaagttgtgtccatc-aggctccagattatgatggatgggatttcccc-gcaacggaaatctacacaataacagttaagtc |
12399008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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